Wall clock time and date at job start Fri Apr 10 2020 18:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.51272 * 120.84921 * 2 1 4 4 C 1.53235 * 108.53515 * 231.36867 * 3 2 1 5 5 C 1.52960 * 109.40276 * 305.37053 * 4 3 2 6 6 C 1.50704 * 109.41453 * 183.70671 * 5 4 3 7 7 O 1.21283 * 119.99823 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00137 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00006 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.44729 * 35.03826 * 9 8 6 11 11 C 1.53037 * 109.46053 * 275.07251 * 9 8 6 12 12 C 1.53193 * 109.31337 * 178.61510 * 11 9 8 13 13 N 1.46924 * 108.77639 * 54.62940 * 12 11 9 14 14 C 1.36939 * 120.62755 * 126.36947 * 13 12 11 15 15 H 1.07998 * 120.00313 * 331.86189 * 14 13 12 16 16 C 1.38816 * 119.99949 * 151.86069 * 14 13 12 17 17 N 1.31624 * 119.99700 * 343.07935 * 16 14 13 18 18 Si 1.86798 * 120.00237 * 163.07372 * 16 14 13 19 19 H 1.48495 * 109.47097 * 59.99969 * 18 16 14 20 20 H 1.48498 * 109.47257 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47159 * 300.00380 * 18 16 14 22 22 C 1.46924 * 118.74469 * 306.39843 * 13 12 11 23 23 C 1.53041 * 109.45876 * 155.00130 * 9 8 6 24 24 H 1.08998 * 109.49686 * 301.33879 * 23 9 8 25 25 O 1.42896 * 109.52238 * 61.42182 * 23 9 8 26 26 C 1.52960 * 109.81705 * 63.59923 * 5 4 3 27 27 C 1.51267 * 120.85334 * 180.02562 * 2 1 3 28 28 H 1.08001 * 120.00482 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99623 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.63043 * 111.65343 * 3 2 1 31 31 H 1.08997 * 109.78076 * 351.17000 * 3 2 1 32 32 H 1.08998 * 109.48527 * 185.39327 * 4 3 2 33 33 H 1.09000 * 109.48600 * 65.34655 * 4 3 2 34 34 H 1.09000 * 109.41063 * 303.56342 * 5 4 3 35 35 H 0.97004 * 119.99687 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.49806 * 58.66249 * 11 9 8 37 37 H 1.09004 * 109.52485 * 298.58119 * 11 9 8 38 38 H 1.09009 * 109.58601 * 294.84831 * 12 11 9 39 39 H 1.08993 * 109.59024 * 174.42227 * 12 11 9 40 40 H 0.97002 * 119.99548 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.58645 * 293.82069 * 22 13 12 42 42 H 1.08999 * 109.71193 * 173.46342 * 22 13 12 43 43 H 0.96701 * 114.00222 * 179.97438 * 25 23 9 44 44 H 1.08994 * 109.48606 * 56.38279 * 26 5 4 45 45 H 1.09004 * 109.48035 * 176.42145 * 26 5 4 46 46 H 1.09000 * 109.63152 * 248.34580 * 27 2 1 47 47 H 1.09003 * 109.62469 * 8.92471 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0856 1.2987 0.0000 4 6 3.1141 1.2518 -1.1349 5 6 3.9804 0.0002 -0.9842 6 6 5.0499 0.0003 -2.0461 7 8 5.1118 0.9115 -2.8442 8 7 5.9374 -1.0120 -2.1088 9 6 6.9766 -1.0121 -3.1414 10 1 7.2995 0.0115 -3.3314 11 6 6.4149 -1.6170 -4.4300 12 6 7.4934 -1.5838 -5.5174 13 7 8.6974 -2.2559 -5.0100 14 6 9.2761 -3.2769 -5.7156 15 1 8.6725 -3.8965 -6.3623 16 6 10.6387 -3.5157 -5.5996 17 7 11.4282 -2.5909 -5.0957 18 14 11.3516 -5.1493 -6.1584 19 1 11.0757 -5.3409 -7.6048 20 1 12.8188 -5.1535 -5.9290 21 1 10.7269 -6.2525 -5.3850 22 6 9.2683 -1.8122 -3.7310 23 6 8.1699 -1.8428 -2.6636 24 1 8.5548 -1.4251 -1.7334 25 8 7.7550 -3.1926 -2.4448 26 6 3.1141 -1.2514 -1.1353 27 6 2.0857 -1.2986 -0.0006 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 2.5986 1.4188 0.9542 31 1 1.4047 2.1351 -0.1574 32 1 3.7460 2.1388 -1.0899 33 1 2.5965 1.2222 -2.0937 34 1 4.4477 -0.0005 0.0005 35 1 5.8875 -1.7409 -1.4707 36 1 5.5507 -1.0386 -4.7569 37 1 6.1142 -2.6487 -4.2473 38 1 7.7299 -0.5491 -5.7661 39 1 7.1327 -2.1019 -6.4059 40 1 12.3804 -2.7576 -5.0150 41 1 9.6495 -0.7961 -3.8339 42 1 10.0798 -2.4790 -3.4396 43 1 8.4627 -3.7771 -2.1404 44 1 2.5965 -1.2217 -2.0940 45 1 3.7460 -2.1384 -1.0905 46 1 2.5987 -1.4191 0.9536 47 1 1.4027 -2.1330 -0.1602 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090548186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:46 Heat of formation + Delta-G solvation = -67.070728 kcal Electronic energy + Delta-G solvation = -26462.870322 eV Core-core repulsion = 22838.530947 eV Total energy + Delta-G solvation = -3624.339374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.23392 -38.53795 -37.48149 -34.79582 -34.30014 -33.10686 -31.98381 -31.24387 -29.42525 -29.05730 -26.93585 -24.98030 -23.17755 -22.63500 -22.14015 -21.37281 -19.88772 -19.32708 -18.62660 -17.41057 -16.86387 -16.07681 -15.49548 -15.18753 -15.09694 -14.90567 -14.64355 -14.15553 -13.89987 -13.84787 -13.61114 -13.53211 -13.14592 -13.00235 -12.59044 -12.50446 -12.09127 -11.99482 -11.84825 -11.56106 -11.29401 -11.25577 -11.11952 -10.80239 -10.77686 -10.59728 -10.47017 -10.39870 -10.17237 -10.05593 -9.75300 -9.51252 -9.25405 -9.14961 -8.66111 -8.49332 -6.68341 -5.82309 -3.23275 2.00601 2.82773 3.35881 3.41664 3.42622 3.44017 4.34667 4.47158 4.49176 4.67239 4.78990 4.85342 4.89469 5.05777 5.16840 5.18330 5.30608 5.33576 5.40273 5.46321 5.51522 5.55411 5.58930 5.64940 5.67678 5.85970 5.89558 5.96120 5.99241 6.04559 6.14617 6.22494 6.31289 6.41178 6.47614 6.57442 6.63108 6.79795 6.88690 6.99195 7.16827 7.42319 7.76159 7.80622 8.23384 8.42347 8.47042 9.17270 9.80316 10.37530 11.26541 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.033502 B = 0.002913 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.581845 B = 9608.506761 C = 9832.076492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.095 4.095 5 C -0.106 4.106 6 C 0.512 3.488 7 O -0.545 6.545 8 N -0.718 5.718 9 C 0.162 3.838 10 H 0.089 0.911 11 C -0.135 4.135 12 C 0.148 3.852 13 N -0.583 5.583 14 C -0.243 4.243 15 H 0.065 0.935 16 C -0.001 4.001 17 N -0.908 5.908 18 Si 0.904 3.096 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.146 3.854 23 C 0.073 3.927 24 H 0.042 0.958 25 O -0.560 6.560 26 C -0.107 4.107 27 C -0.084 4.084 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.401 0.599 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.057 0.943 40 H 0.254 0.746 41 H 0.027 0.973 42 H 0.095 0.905 43 H 0.375 0.625 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.409 3.604 13.385 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.118 4.118 3 C -0.124 4.124 4 C -0.133 4.133 5 C -0.128 4.128 6 C 0.298 3.702 7 O -0.422 6.422 8 N -0.368 5.368 9 C 0.058 3.942 10 H 0.107 0.893 11 C -0.175 4.175 12 C 0.021 3.979 13 N -0.305 5.305 14 C -0.373 4.373 15 H 0.083 0.917 16 C -0.199 4.199 17 N -0.553 5.553 18 Si 0.733 3.267 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.211 1.211 22 C 0.019 3.981 23 C 0.012 3.988 24 H 0.060 0.940 25 O -0.365 6.365 26 C -0.145 4.145 27 C -0.122 4.122 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.235 0.765 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.113 0.887 43 H 0.221 0.779 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.726 4.497 12.596 21.416 hybrid contribution 1.009 -1.390 0.233 1.734 sum -15.717 3.107 12.829 20.525 Atomic orbital electron populations 1.23615 0.95001 1.01754 1.03374 1.22006 0.95094 0.95924 0.98778 1.20853 0.97640 0.94756 0.99151 1.21340 0.96454 0.96712 0.98782 1.21326 0.95132 0.97523 0.98777 1.20609 0.82248 0.81930 0.85458 1.90689 1.73193 1.36203 1.42145 1.46240 1.31720 1.24524 1.34330 1.20988 0.86298 0.99257 0.87654 0.89326 1.22286 0.98832 1.00942 0.95475 1.20895 0.87199 0.95556 0.94235 1.43859 1.28520 1.38946 1.19148 1.19143 0.90147 1.05320 1.22700 0.91739 1.25030 0.95945 0.98001 1.00897 1.70012 1.03653 1.31655 1.49957 0.86348 0.77698 0.83924 0.78683 1.20909 1.21731 1.21055 1.21425 0.93039 0.99423 0.84254 1.22834 0.95516 0.82507 0.97949 0.93990 1.86341 1.39781 1.20168 1.90222 1.21538 0.97097 0.96440 0.99449 1.20815 0.97513 0.94898 0.98936 0.88551 0.88555 0.90900 0.91055 0.90806 0.91106 0.88757 0.76509 0.92981 0.91280 0.96288 0.92490 0.93593 0.95514 0.88689 0.77864 0.91139 0.90910 0.90676 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.57 13.99 29.02 0.41 -1.16 16 2 C -0.12 -0.99 5.35 -100.51 -0.54 -1.53 16 3 C -0.09 -0.72 6.03 -27.48 -0.17 -0.89 16 4 C -0.09 -1.00 4.54 -26.63 -0.12 -1.12 16 5 C -0.11 -1.12 2.42 -91.81 -0.22 -1.34 16 6 C 0.51 7.48 7.12 -10.98 -0.08 7.40 16 7 O -0.54 -10.09 15.60 5.55 0.09 -10.01 16 8 N -0.72 -10.43 4.92 -53.77 -0.26 -10.69 16 9 C 0.16 2.87 2.20 -67.89 -0.15 2.73 16 10 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 11 C -0.14 -2.58 5.51 -26.61 -0.15 -2.72 16 12 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 13 N -0.58 -14.37 2.93 -172.32 -0.51 -14.87 16 14 C -0.24 -6.58 9.58 -15.06 -0.14 -6.72 16 15 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 16 C 0.00 -0.02 4.92 -17.43 -0.09 -0.11 16 17 N -0.91 -25.66 11.19 55.49 0.62 -25.04 16 18 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.15 3.31 4.94 -3.71 -0.02 3.29 16 23 C 0.07 1.32 3.38 -26.61 -0.09 1.23 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 O -0.56 -9.74 12.09 -35.23 -0.43 -10.16 16 26 C -0.11 -1.00 5.14 -26.64 -0.14 -1.14 16 27 C -0.08 -0.66 6.03 -27.49 -0.17 -0.83 16 28 H 0.10 0.68 7.92 -52.49 -0.42 0.27 16 29 H 0.10 0.68 7.92 -52.49 -0.42 0.26 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 32 H 0.07 0.83 8.00 -51.93 -0.42 0.41 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.40 5.06 7.60 -40.82 -0.31 4.75 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.38 7.61 -51.93 -0.40 0.98 16 38 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 39 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 2.36 6.06 -51.93 -0.31 2.04 16 43 H 0.37 5.67 9.08 45.56 0.41 6.08 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.65 7.44 -51.93 -0.39 0.26 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -30.93 367.72 -8.87 -39.80 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.22 Total: 8.84 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.68 Total: 0.29 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.15 Total: -50.60 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.34 Total: -20.17 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.93 -8.87 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090548186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.270 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds