Wall clock time and date at job start Fri Apr 10 2020 18:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.51272 * 120.84921 * 2 1 4 4 C 1.53235 * 108.53515 * 231.36867 * 3 2 1 5 5 C 1.52960 * 109.40276 * 305.37053 * 4 3 2 6 6 C 1.50704 * 109.41453 * 183.70671 * 5 4 3 7 7 O 1.21283 * 119.99823 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00137 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00006 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.44729 * 35.03826 * 9 8 6 11 11 C 1.53037 * 109.46053 * 275.07251 * 9 8 6 12 12 C 1.53193 * 109.31337 * 178.61510 * 11 9 8 13 13 N 1.46924 * 108.77639 * 54.62940 * 12 11 9 14 14 C 1.36939 * 120.62755 * 126.36947 * 13 12 11 15 15 H 1.07998 * 120.00313 * 331.86189 * 14 13 12 16 16 C 1.38816 * 119.99949 * 151.86069 * 14 13 12 17 17 N 1.31624 * 119.99700 * 343.07935 * 16 14 13 18 18 Si 1.86798 * 120.00237 * 163.07372 * 16 14 13 19 19 H 1.48495 * 109.47097 * 59.99969 * 18 16 14 20 20 H 1.48498 * 109.47257 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47159 * 300.00380 * 18 16 14 22 22 C 1.46924 * 118.74469 * 306.39843 * 13 12 11 23 23 C 1.53041 * 109.45876 * 155.00130 * 9 8 6 24 24 H 1.08998 * 109.49686 * 301.33879 * 23 9 8 25 25 O 1.42896 * 109.52238 * 61.42182 * 23 9 8 26 26 C 1.52960 * 109.81705 * 63.59923 * 5 4 3 27 27 C 1.51267 * 120.85334 * 180.02562 * 2 1 3 28 28 H 1.08001 * 120.00482 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99623 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.63043 * 111.65343 * 3 2 1 31 31 H 1.08997 * 109.78076 * 351.17000 * 3 2 1 32 32 H 1.08998 * 109.48527 * 185.39327 * 4 3 2 33 33 H 1.09000 * 109.48600 * 65.34655 * 4 3 2 34 34 H 1.09000 * 109.41063 * 303.56342 * 5 4 3 35 35 H 0.97004 * 119.99687 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.49806 * 58.66249 * 11 9 8 37 37 H 1.09004 * 109.52485 * 298.58119 * 11 9 8 38 38 H 1.09009 * 109.58601 * 294.84831 * 12 11 9 39 39 H 1.08993 * 109.59024 * 174.42227 * 12 11 9 40 40 H 0.97002 * 119.99548 * 180.02562 * 17 16 14 41 41 H 1.09005 * 109.58645 * 293.82069 * 22 13 12 42 42 H 1.08999 * 109.71193 * 173.46342 * 22 13 12 43 43 H 0.96701 * 114.00222 * 179.97438 * 25 23 9 44 44 H 1.08994 * 109.48606 * 56.38279 * 26 5 4 45 45 H 1.09004 * 109.48035 * 176.42145 * 26 5 4 46 46 H 1.09000 * 109.63152 * 248.34580 * 27 2 1 47 47 H 1.09003 * 109.62469 * 8.92471 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0856 1.2987 0.0000 4 6 3.1141 1.2518 -1.1349 5 6 3.9804 0.0002 -0.9842 6 6 5.0499 0.0003 -2.0461 7 8 5.1118 0.9115 -2.8442 8 7 5.9374 -1.0120 -2.1088 9 6 6.9766 -1.0121 -3.1414 10 1 7.2995 0.0115 -3.3314 11 6 6.4149 -1.6170 -4.4300 12 6 7.4934 -1.5838 -5.5174 13 7 8.6974 -2.2559 -5.0100 14 6 9.2761 -3.2769 -5.7156 15 1 8.6725 -3.8965 -6.3623 16 6 10.6387 -3.5157 -5.5996 17 7 11.4282 -2.5909 -5.0957 18 14 11.3516 -5.1493 -6.1584 19 1 11.0757 -5.3409 -7.6048 20 1 12.8188 -5.1535 -5.9290 21 1 10.7269 -6.2525 -5.3850 22 6 9.2683 -1.8122 -3.7310 23 6 8.1699 -1.8428 -2.6636 24 1 8.5548 -1.4251 -1.7334 25 8 7.7550 -3.1926 -2.4448 26 6 3.1141 -1.2514 -1.1353 27 6 2.0857 -1.2986 -0.0006 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 2.5986 1.4188 0.9542 31 1 1.4047 2.1351 -0.1574 32 1 3.7460 2.1388 -1.0899 33 1 2.5965 1.2222 -2.0937 34 1 4.4477 -0.0005 0.0005 35 1 5.8875 -1.7409 -1.4707 36 1 5.5507 -1.0386 -4.7569 37 1 6.1142 -2.6487 -4.2473 38 1 7.7299 -0.5491 -5.7661 39 1 7.1327 -2.1019 -6.4059 40 1 12.3804 -2.7576 -5.0150 41 1 9.6495 -0.7961 -3.8339 42 1 10.0798 -2.4790 -3.4396 43 1 8.4627 -3.7771 -2.1404 44 1 2.5965 -1.2217 -2.0940 45 1 3.7460 -2.1384 -1.0905 46 1 2.5987 -1.4191 0.9536 47 1 1.4027 -2.1330 -0.1602 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090548186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:45 Heat of formation + Delta-G solvation = -87.804660 kcal Electronic energy + Delta-G solvation = -26463.769412 eV Core-core repulsion = 22838.530947 eV Total energy + Delta-G solvation = -3625.238465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39924 -39.83898 -38.57471 -36.49096 -35.71987 -34.15293 -33.53817 -31.99588 -31.12440 -30.68185 -27.91086 -26.66965 -24.24973 -23.84100 -23.65952 -22.60771 -21.17917 -20.75574 -19.30110 -19.14441 -18.08343 -17.51528 -17.08862 -16.78985 -16.11477 -15.86281 -15.71517 -15.54477 -15.39843 -15.21221 -14.91597 -14.59334 -14.41917 -14.24143 -13.83494 -13.65211 -13.52808 -13.25847 -13.09109 -12.78137 -12.62410 -12.54232 -12.39778 -12.35467 -12.23768 -12.03651 -11.94274 -11.83747 -11.55784 -11.44372 -11.08680 -10.80095 -10.65266 -10.58218 -9.98834 -9.86288 -8.68082 -7.88061 -5.32714 1.40814 1.49334 1.50177 1.57855 1.66443 2.21435 2.51730 3.24545 3.39763 3.59443 3.64724 3.73436 3.83317 3.89039 4.02414 4.10935 4.17520 4.33866 4.34436 4.39402 4.42178 4.49775 4.59318 4.63679 4.74603 4.82638 4.85113 4.90532 4.94895 5.05037 5.06121 5.07201 5.15774 5.17428 5.20149 5.24419 5.36125 5.42334 5.54104 5.55477 5.64530 5.81416 6.03331 6.36667 6.63462 6.91731 7.14304 7.30692 7.81845 8.35326 9.18305 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.033502 B = 0.002913 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.581845 B = 9608.506761 C = 9832.076492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.081 4.081 4 C -0.093 4.093 5 C -0.096 4.096 6 C 0.510 3.490 7 O -0.587 6.587 8 N -0.706 5.706 9 C 0.168 3.832 10 H 0.070 0.930 11 C -0.118 4.118 12 C 0.145 3.855 13 N -0.598 5.598 14 C -0.257 4.257 15 H 0.061 0.939 16 C -0.046 4.046 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.281 1.281 20 H -0.294 1.294 21 H -0.275 1.275 22 C 0.150 3.850 23 C 0.092 3.908 24 H 0.069 0.931 25 O -0.560 6.560 26 C -0.103 4.103 27 C -0.080 4.080 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.121 0.879 35 H 0.414 0.586 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.009 0.991 39 H 0.055 0.945 40 H 0.251 0.749 41 H 0.002 0.998 42 H 0.073 0.927 43 H 0.386 0.614 44 H 0.053 0.947 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 2.402 15.368 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.133 4.133 3 C -0.118 4.118 4 C -0.131 4.131 5 C -0.117 4.117 6 C 0.298 3.702 7 O -0.468 6.468 8 N -0.357 5.357 9 C 0.063 3.937 10 H 0.088 0.912 11 C -0.158 4.158 12 C 0.018 3.982 13 N -0.321 5.321 14 C -0.387 4.387 15 H 0.079 0.921 16 C -0.242 4.242 17 N -0.582 5.582 18 Si 0.796 3.204 19 H -0.208 1.208 20 H -0.220 1.220 21 H -0.201 1.201 22 C 0.023 3.977 23 C 0.031 3.969 24 H 0.087 0.913 25 O -0.367 6.367 26 C -0.141 4.141 27 C -0.117 4.117 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.138 0.862 35 H 0.251 0.749 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.020 0.980 42 H 0.091 0.909 43 H 0.235 0.765 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.156 3.272 14.612 23.534 hybrid contribution 1.413 -0.958 -0.442 1.763 sum -16.743 2.313 14.171 22.057 Atomic orbital electron populations 1.23784 0.95009 1.02455 1.02424 1.22109 0.95424 0.96101 0.99620 1.20815 0.97132 0.95185 0.98654 1.21296 0.96713 0.96259 0.98843 1.21345 0.93950 0.98253 0.98175 1.21376 0.82399 0.80839 0.85620 1.90677 1.74242 1.37791 1.44047 1.46028 1.30878 1.25153 1.33672 1.20658 0.87098 0.97938 0.88040 0.91241 1.22049 0.97707 1.00761 0.95269 1.20965 0.87256 0.94625 0.95316 1.44081 1.29079 1.38896 1.19997 1.19395 0.90535 1.05845 1.22908 0.92098 1.25725 0.96139 1.00894 1.01399 1.70162 1.03581 1.33263 1.51207 0.85335 0.76555 0.80265 0.78201 1.20752 1.22041 1.20060 1.21322 0.94101 0.97216 0.85048 1.22479 0.93930 0.83304 0.97188 0.91336 1.86313 1.40305 1.19867 1.90177 1.21515 0.97294 0.95860 0.99457 1.20812 0.97162 0.94893 0.98813 0.88074 0.87778 0.89528 0.90563 0.91956 0.93183 0.86156 0.74913 0.92745 0.91624 0.97324 0.92668 0.93970 0.98010 0.90862 0.76489 0.92816 0.90068 0.89137 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.66 13.99 67.79 0.95 -1.71 16 2 C -0.13 -1.89 5.35 -16.12 -0.09 -1.98 16 3 C -0.08 -1.17 6.03 30.11 0.18 -0.99 16 4 C -0.09 -1.86 4.54 30.66 0.14 -1.72 16 5 C -0.10 -1.84 2.42 -11.57 -0.03 -1.87 16 6 C 0.51 14.34 7.12 87.66 0.62 14.97 16 7 O -0.59 -21.86 15.60 -3.04 -0.05 -21.91 16 8 N -0.71 -19.32 4.92 -442.41 -2.18 -21.50 16 9 C 0.17 5.85 2.20 45.02 0.10 5.95 16 10 H 0.07 2.74 7.58 -2.39 -0.02 2.72 16 11 C -0.12 -4.46 5.51 30.67 0.17 -4.29 16 12 C 0.14 6.43 6.52 86.36 0.56 7.00 16 13 N -0.60 -29.91 2.93 -699.09 -2.05 -31.96 16 14 C -0.26 -13.99 9.58 84.03 0.81 -13.19 16 15 H 0.06 3.30 7.88 -2.91 -0.02 3.28 16 16 C -0.05 -2.52 4.92 84.86 0.42 -2.11 16 17 N -0.94 -53.76 11.19 21.65 0.24 -53.51 16 18 Si 0.97 43.90 29.59 68.60 2.03 45.93 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.15 6.90 4.94 86.36 0.43 7.33 16 23 C 0.09 3.22 3.38 30.67 0.10 3.33 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 O -0.56 -18.33 12.09 -148.98 -1.80 -20.13 16 26 C -0.10 -1.69 5.14 30.65 0.16 -1.53 16 27 C -0.08 -1.01 6.03 30.10 0.18 -0.83 16 28 H 0.10 1.22 7.92 -2.91 -0.02 1.19 16 29 H 0.10 1.20 7.92 -2.91 -0.02 1.18 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.03 7.90 -2.39 -0.02 1.01 16 32 H 0.06 1.37 8.00 -2.39 -0.02 1.35 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.41 9.27 7.60 -92.71 -0.70 8.56 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 2.55 7.61 -2.38 -0.02 2.53 16 38 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.05 2.42 7.93 -2.39 -0.02 2.40 16 40 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 42 H 0.07 3.69 6.06 -2.39 -0.01 3.68 16 43 H 0.39 10.89 9.08 -74.06 -0.67 10.22 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.20 7.44 -2.38 -0.02 1.18 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 0.91 7.89 -2.39 -0.02 0.89 16 Total: -1.00 -67.26 367.72 0.48 -66.77 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -0.42 Total: 27.94 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 4.70 Total: 8.37 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -3.99 Total: -106.97 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -1.85 Total: -42.04 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -67.26 0.48 -66.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090548186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.031 kcal (2) G-P(sol) polarization free energy of solvation -67.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds