Wall clock time and date at job start Fri Apr 10 2020 18:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.51268 * 120.85058 * 2 1 4 4 C 1.53224 * 108.53955 * 231.32396 * 3 2 1 5 5 C 1.52956 * 109.40760 * 305.37680 * 4 3 2 6 6 C 1.50694 * 109.41718 * 183.70126 * 5 4 3 7 7 O 1.21278 * 120.00198 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00423 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00346 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.44707 * 324.96323 * 9 8 6 11 11 C 1.53347 * 109.43176 * 84.86955 * 9 8 6 12 12 C 1.53185 * 109.15517 * 58.75689 * 11 9 8 13 13 N 1.46927 * 108.88968 * 54.57770 * 12 11 9 14 14 C 1.36944 * 120.63012 * 126.34617 * 13 12 11 15 15 H 1.08002 * 119.99599 * 332.61389 * 14 13 12 16 16 C 1.38812 * 120.00181 * 152.61368 * 14 13 12 17 17 N 1.31609 * 119.99991 * 159.35190 * 16 14 13 18 18 Si 1.86806 * 119.99889 * 339.35143 * 16 14 13 19 19 H 1.48501 * 109.46946 * 92.91197 * 18 16 14 20 20 H 1.48496 * 109.46962 * 212.91667 * 18 16 14 21 21 H 1.48503 * 109.47163 * 332.91431 * 18 16 14 22 22 C 1.46925 * 118.74124 * 306.31705 * 13 12 11 23 23 C 1.53048 * 109.45916 * 205.00305 * 9 8 6 24 24 H 1.08997 * 109.49255 * 181.39471 * 23 9 8 25 25 O 1.42898 * 109.52522 * 61.31135 * 23 9 8 26 26 C 1.52961 * 109.81710 * 63.59268 * 5 4 3 27 27 C 1.51269 * 120.84738 * 179.97438 * 2 1 3 28 28 H 1.08004 * 119.99706 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00125 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.62498 * 111.60729 * 3 2 1 31 31 H 1.09002 * 109.62633 * 351.04113 * 3 2 1 32 32 H 1.09000 * 109.48517 * 185.39160 * 4 3 2 33 33 H 1.09004 * 109.48319 * 65.35244 * 4 3 2 34 34 H 1.09010 * 109.40883 * 303.56223 * 5 4 3 35 35 H 0.97002 * 119.99605 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.67972 * 298.78759 * 11 9 8 37 37 H 1.09006 * 109.47433 * 178.60174 * 11 9 8 38 38 H 1.09005 * 109.58724 * 294.72603 * 12 11 9 39 39 H 1.08994 * 109.59184 * 174.43720 * 12 11 9 40 40 H 0.96999 * 120.00138 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.58918 * 173.39778 * 22 13 12 42 42 H 1.08995 * 109.59151 * 293.82866 * 22 13 12 43 43 H 0.96701 * 114.00330 * 180.14496 * 25 23 9 44 44 H 1.09001 * 109.48004 * 56.38730 * 26 5 4 45 45 H 1.09003 * 109.47951 * 176.42369 * 26 5 4 46 46 H 1.09002 * 109.61991 * 248.38961 * 27 2 1 47 47 H 1.08998 * 109.62590 * 8.95404 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1149 1.2514 -1.1341 5 6 3.9811 -0.0002 -0.9826 6 6 5.0511 -0.0004 -2.0437 7 8 5.1142 0.9109 -2.8414 8 7 5.9386 -1.0128 -2.1056 9 6 6.9792 -1.0127 -3.1369 10 1 6.5819 -0.5763 -4.0532 11 6 8.1757 -0.1838 -2.6542 12 6 8.7083 -0.7828 -1.3489 13 7 9.0055 -2.2054 -1.5648 14 6 10.2403 -2.7141 -1.2616 15 1 11.1098 -2.0741 -1.2903 16 6 10.3744 -4.0521 -0.9174 17 7 11.5452 -4.6441 -1.0209 18 14 8.8929 -5.0125 -0.3071 19 1 8.2382 -5.6935 -1.4529 20 1 9.3342 -6.0258 0.6847 21 1 7.9285 -4.0815 0.3321 22 6 7.9526 -3.0721 -2.1115 23 6 7.4270 -2.4506 -3.4094 24 1 8.2186 -2.4491 -4.1587 25 8 6.3179 -3.2136 -3.8886 26 6 3.1149 -1.2517 -1.1338 27 6 2.0857 -1.2987 0.0006 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 2.5981 1.4191 0.9546 31 1 1.4028 2.1330 -0.1599 32 1 3.7467 2.1384 -1.0890 33 1 2.5979 1.2216 -2.0933 34 1 4.4477 -0.0006 0.0026 35 1 5.8884 -1.7415 -1.4673 36 1 7.8629 0.8459 -2.4811 37 1 8.9604 -0.2037 -3.4106 38 1 7.9561 -0.6813 -0.5665 39 1 9.6176 -0.2606 -1.0514 40 1 11.6389 -5.5792 -0.7808 41 1 8.3638 -4.0598 -2.3198 42 1 7.1388 -3.1572 -1.3915 43 1 6.5295 -4.1375 -4.0802 44 1 2.5978 -1.2223 -2.0929 45 1 3.7467 -2.1388 -1.0883 46 1 2.5980 -1.4186 0.9552 47 1 1.4027 -2.1331 -0.1588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090548188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:49 Heat of formation + Delta-G solvation = -60.571644 kcal Electronic energy + Delta-G solvation = -27037.747441 eV Core-core repulsion = 23413.689889 eV Total energy + Delta-G solvation = -3624.057553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.35789 -38.79459 -37.51326 -35.55474 -34.23943 -33.10125 -31.99062 -31.22205 -30.26140 -29.21588 -26.88675 -25.28494 -23.15862 -23.05113 -22.33687 -21.62848 -20.23191 -18.98164 -18.58060 -17.38727 -17.00021 -16.85136 -15.77697 -15.27933 -15.23846 -15.05801 -14.52243 -14.41601 -14.19906 -13.87194 -13.84476 -13.60586 -13.28886 -13.05648 -12.63122 -12.59247 -12.47766 -12.31414 -11.83072 -11.81789 -11.58143 -11.50406 -11.24303 -11.11599 -11.00764 -10.74537 -10.56775 -10.37187 -10.34919 -9.90133 -9.74289 -9.57128 -9.51492 -9.20546 -8.76164 -8.71351 -7.12132 -6.07126 -3.44455 2.03921 2.83857 3.17054 3.36449 3.38300 3.39234 4.30036 4.38251 4.39591 4.52716 4.73613 4.82784 4.85569 4.92266 5.09114 5.12660 5.20654 5.22301 5.28680 5.37977 5.45047 5.52338 5.57802 5.59746 5.65891 5.68019 5.71034 5.75246 5.89654 5.92438 5.99466 6.01730 6.16874 6.18579 6.29408 6.31769 6.42344 6.44383 6.55402 6.66504 6.68068 6.83336 7.74376 7.75262 7.90854 8.21012 8.44575 8.79740 9.57959 9.93829 11.08579 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.004070 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.842316 B = 6878.523619 C = 7442.432399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.087 4.087 4 C -0.093 4.093 5 C -0.107 4.107 6 C 0.518 3.482 7 O -0.549 6.549 8 N -0.709 5.709 9 C 0.164 3.836 10 H 0.084 0.916 11 C -0.145 4.145 12 C 0.149 3.851 13 N -0.600 5.600 14 C -0.263 4.263 15 H 0.088 0.912 16 C 0.024 3.976 17 N -0.904 5.904 18 Si 0.883 3.117 19 H -0.290 1.290 20 H -0.302 1.302 21 H -0.271 1.271 22 C 0.099 3.901 23 C 0.076 3.924 24 H 0.072 0.928 25 O -0.571 6.571 26 C -0.107 4.107 27 C -0.086 4.086 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.400 0.600 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.024 0.976 39 H 0.066 0.934 40 H 0.264 0.736 41 H 0.078 0.922 42 H 0.029 0.971 43 H 0.377 0.623 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.244 6.986 0.721 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.117 4.117 3 C -0.124 4.124 4 C -0.131 4.131 5 C -0.129 4.129 6 C 0.304 3.696 7 O -0.427 6.427 8 N -0.360 5.360 9 C 0.059 3.941 10 H 0.102 0.898 11 C -0.185 4.185 12 C 0.023 3.977 13 N -0.325 5.325 14 C -0.391 4.391 15 H 0.106 0.894 16 C -0.175 4.175 17 N -0.547 5.547 18 Si 0.714 3.286 19 H -0.218 1.218 20 H -0.230 1.230 21 H -0.196 1.196 22 C -0.027 4.027 23 C 0.016 3.984 24 H 0.090 0.910 25 O -0.375 6.375 26 C -0.145 4.145 27 C -0.123 4.123 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.236 0.764 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.224 0.776 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.358 8.063 0.247 20.052 hybrid contribution -0.410 -1.703 0.631 1.862 sum -18.767 6.360 0.878 19.835 Atomic orbital electron populations 1.23605 0.94981 1.01711 1.03546 1.22019 0.95094 0.95946 0.98635 1.20863 0.97607 0.94720 0.99242 1.21324 0.96413 0.96675 0.98703 1.21329 0.95099 0.97534 0.98916 1.20523 0.81876 0.81817 0.85354 1.90658 1.73973 1.35949 1.42105 1.46026 1.30928 1.24841 1.34177 1.20872 0.87806 0.94184 0.91224 0.89833 1.22449 0.96819 0.98732 1.00516 1.20939 0.98493 0.84887 0.93390 1.44286 1.11217 1.04284 1.72733 1.18942 0.83731 0.94924 1.41527 0.89395 1.25305 0.96086 0.96918 0.99236 1.69827 1.23571 1.11544 1.49734 0.86963 0.83531 0.79515 0.78630 1.21767 1.22963 1.19647 1.22002 0.91908 0.95939 0.92886 1.22753 0.87830 0.90846 0.97018 0.90984 1.86440 1.37151 1.26095 1.87825 1.21534 0.97083 0.96461 0.99383 1.20829 0.97508 0.94879 0.99050 0.88570 0.88579 0.90789 0.91062 0.90789 0.91196 0.88559 0.76393 0.91258 0.90716 0.95804 0.91524 0.92625 0.90445 0.95360 0.77648 0.91147 0.90982 0.90580 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.69 13.99 29.01 0.41 -1.28 16 2 C -0.12 -1.07 5.35 -100.51 -0.54 -1.60 16 3 C -0.09 -0.78 6.03 -27.49 -0.17 -0.94 16 4 C -0.09 -1.02 4.54 -26.64 -0.12 -1.14 16 5 C -0.11 -1.24 2.42 -91.82 -0.22 -1.46 16 6 C 0.52 7.76 7.12 -10.99 -0.08 7.68 16 7 O -0.55 -9.90 15.60 5.56 0.09 -9.82 16 8 N -0.71 -10.78 4.02 -53.61 -0.22 -11.00 16 9 C 0.16 2.71 2.47 -67.73 -0.17 2.54 16 10 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 11 C -0.15 -2.42 5.80 -26.46 -0.15 -2.57 16 12 C 0.15 2.79 6.25 -3.71 -0.02 2.77 16 13 N -0.60 -13.26 2.77 -172.32 -0.48 -13.74 16 14 C -0.26 -6.98 10.04 -15.06 -0.15 -7.13 16 15 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 16 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 17 N -0.90 -26.68 13.97 55.49 0.78 -25.91 16 18 Si 0.88 21.08 24.35 -169.99 -4.14 16.94 16 19 H -0.29 -6.56 6.62 56.52 0.37 -6.19 16 20 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.27 -6.30 6.64 56.52 0.38 -5.92 16 22 C 0.10 1.97 3.53 -3.71 -0.01 1.96 16 23 C 0.08 1.30 3.36 -26.61 -0.09 1.21 16 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 25 O -0.57 -8.79 13.21 -35.23 -0.47 -9.26 16 26 C -0.11 -1.11 5.14 -26.63 -0.14 -1.25 16 27 C -0.09 -0.76 6.03 -27.48 -0.17 -0.93 16 28 H 0.10 0.72 7.92 -52.48 -0.42 0.31 16 29 H 0.10 0.73 7.92 -52.49 -0.42 0.31 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 32 H 0.07 0.85 7.99 -51.93 -0.42 0.44 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.40 5.92 6.21 -40.82 -0.25 5.67 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 39 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.08 1.68 4.50 -51.93 -0.23 1.45 16 42 H 0.03 0.56 5.57 -51.93 -0.29 0.27 16 43 H 0.38 4.54 9.08 45.56 0.41 4.96 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.75 7.44 -51.93 -0.39 0.37 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -31.00 358.74 -7.76 -38.76 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.02 Total: 10.20 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.71 Total: -1.58 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.08 Total: -50.65 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.38 Total: -19.07 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.14 Total: 16.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.00 -7.76 -38.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090548188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.815 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds