Wall clock time and date at job start Fri Apr 10 2020 18:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.51268 * 120.85058 * 2 1 4 4 C 1.53224 * 108.53955 * 231.32396 * 3 2 1 5 5 C 1.52956 * 109.40760 * 305.37680 * 4 3 2 6 6 C 1.50694 * 109.41718 * 183.70126 * 5 4 3 7 7 O 1.21278 * 120.00198 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00423 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00346 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.44707 * 324.96323 * 9 8 6 11 11 C 1.53347 * 109.43176 * 84.86955 * 9 8 6 12 12 C 1.53185 * 109.15517 * 58.75689 * 11 9 8 13 13 N 1.46927 * 108.88968 * 54.57770 * 12 11 9 14 14 C 1.36944 * 120.63012 * 126.34617 * 13 12 11 15 15 H 1.08002 * 119.99599 * 332.61389 * 14 13 12 16 16 C 1.38812 * 120.00181 * 152.61368 * 14 13 12 17 17 N 1.31609 * 119.99991 * 159.35190 * 16 14 13 18 18 Si 1.86806 * 119.99889 * 339.35143 * 16 14 13 19 19 H 1.48501 * 109.46946 * 92.91197 * 18 16 14 20 20 H 1.48496 * 109.46962 * 212.91667 * 18 16 14 21 21 H 1.48503 * 109.47163 * 332.91431 * 18 16 14 22 22 C 1.46925 * 118.74124 * 306.31705 * 13 12 11 23 23 C 1.53048 * 109.45916 * 205.00305 * 9 8 6 24 24 H 1.08997 * 109.49255 * 181.39471 * 23 9 8 25 25 O 1.42898 * 109.52522 * 61.31135 * 23 9 8 26 26 C 1.52961 * 109.81710 * 63.59268 * 5 4 3 27 27 C 1.51269 * 120.84738 * 179.97438 * 2 1 3 28 28 H 1.08004 * 119.99706 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00125 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.62498 * 111.60729 * 3 2 1 31 31 H 1.09002 * 109.62633 * 351.04113 * 3 2 1 32 32 H 1.09000 * 109.48517 * 185.39160 * 4 3 2 33 33 H 1.09004 * 109.48319 * 65.35244 * 4 3 2 34 34 H 1.09010 * 109.40883 * 303.56223 * 5 4 3 35 35 H 0.97002 * 119.99605 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.67972 * 298.78759 * 11 9 8 37 37 H 1.09006 * 109.47433 * 178.60174 * 11 9 8 38 38 H 1.09005 * 109.58724 * 294.72603 * 12 11 9 39 39 H 1.08994 * 109.59184 * 174.43720 * 12 11 9 40 40 H 0.96999 * 120.00138 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.58918 * 173.39778 * 22 13 12 42 42 H 1.08995 * 109.59151 * 293.82866 * 22 13 12 43 43 H 0.96701 * 114.00330 * 180.14496 * 25 23 9 44 44 H 1.09001 * 109.48004 * 56.38730 * 26 5 4 45 45 H 1.09003 * 109.47951 * 176.42369 * 26 5 4 46 46 H 1.09002 * 109.61991 * 248.38961 * 27 2 1 47 47 H 1.08998 * 109.62590 * 8.95404 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1149 1.2514 -1.1341 5 6 3.9811 -0.0002 -0.9826 6 6 5.0511 -0.0004 -2.0437 7 8 5.1142 0.9109 -2.8414 8 7 5.9386 -1.0128 -2.1056 9 6 6.9792 -1.0127 -3.1369 10 1 6.5819 -0.5763 -4.0532 11 6 8.1757 -0.1838 -2.6542 12 6 8.7083 -0.7828 -1.3489 13 7 9.0055 -2.2054 -1.5648 14 6 10.2403 -2.7141 -1.2616 15 1 11.1098 -2.0741 -1.2903 16 6 10.3744 -4.0521 -0.9174 17 7 11.5452 -4.6441 -1.0209 18 14 8.8929 -5.0125 -0.3071 19 1 8.2382 -5.6935 -1.4529 20 1 9.3342 -6.0258 0.6847 21 1 7.9285 -4.0815 0.3321 22 6 7.9526 -3.0721 -2.1115 23 6 7.4270 -2.4506 -3.4094 24 1 8.2186 -2.4491 -4.1587 25 8 6.3179 -3.2136 -3.8886 26 6 3.1149 -1.2517 -1.1338 27 6 2.0857 -1.2987 0.0006 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 2.5981 1.4191 0.9546 31 1 1.4028 2.1330 -0.1599 32 1 3.7467 2.1384 -1.0890 33 1 2.5979 1.2216 -2.0933 34 1 4.4477 -0.0006 0.0026 35 1 5.8884 -1.7415 -1.4673 36 1 7.8629 0.8459 -2.4811 37 1 8.9604 -0.2037 -3.4106 38 1 7.9561 -0.6813 -0.5665 39 1 9.6176 -0.2606 -1.0514 40 1 11.6389 -5.5792 -0.7808 41 1 8.3638 -4.0598 -2.3198 42 1 7.1388 -3.1572 -1.3915 43 1 6.5295 -4.1375 -4.0802 44 1 2.5978 -1.2223 -2.0929 45 1 3.7467 -2.1388 -1.0883 46 1 2.5980 -1.4186 0.9552 47 1 1.4027 -2.1331 -0.1588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090548188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:48 Heat of formation + Delta-G solvation = -82.347658 kcal Electronic energy + Delta-G solvation = -27038.691720 eV Core-core repulsion = 23413.689889 eV Total energy + Delta-G solvation = -3625.001832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55363 -39.99728 -38.55920 -37.00332 -35.72323 -34.14149 -33.59370 -32.11787 -31.70097 -30.66054 -27.84884 -26.93164 -24.61328 -23.90209 -23.51687 -23.09400 -21.30591 -20.41919 -19.30536 -18.94002 -18.34249 -18.30254 -17.25696 -16.80747 -16.28746 -16.02934 -15.72919 -15.69846 -15.35639 -15.32384 -14.99878 -14.70453 -14.46546 -14.42427 -14.02514 -13.91106 -13.62007 -13.33779 -13.26426 -13.17547 -12.73514 -12.64275 -12.51549 -12.35375 -12.25386 -12.00045 -11.94409 -11.68374 -11.56230 -11.40445 -11.15997 -11.10058 -10.69960 -10.64429 -10.04738 -9.87488 -8.97941 -8.17388 -5.51788 1.28575 1.39597 1.43315 1.51518 1.67382 2.21511 2.40100 2.89417 3.13914 3.34848 3.61327 3.68364 3.80102 3.82198 3.93569 4.07821 4.11117 4.16800 4.21267 4.32151 4.33767 4.40352 4.48478 4.54215 4.62937 4.68497 4.80834 4.82691 4.86082 4.89476 4.93720 5.02656 5.04990 5.05769 5.14591 5.17857 5.22683 5.24812 5.34537 5.53091 5.79887 5.82912 6.02018 6.11563 6.56099 6.71485 6.88672 7.26333 7.57286 7.96200 9.02088 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.004070 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.842316 B = 6878.523619 C = 7442.432399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 C -0.082 4.082 4 C -0.089 4.089 5 C -0.101 4.101 6 C 0.517 3.483 7 O -0.582 6.582 8 N -0.705 5.705 9 C 0.167 3.833 10 H 0.077 0.923 11 C -0.134 4.134 12 C 0.149 3.851 13 N -0.610 5.610 14 C -0.253 4.253 15 H 0.053 0.947 16 C -0.034 4.034 17 N -0.955 5.955 18 Si 0.947 3.053 19 H -0.268 1.268 20 H -0.315 1.315 21 H -0.256 1.256 22 C 0.098 3.902 23 C 0.092 3.908 24 H 0.066 0.934 25 O -0.569 6.569 26 C -0.102 4.102 27 C -0.082 4.082 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.405 0.595 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.262 0.738 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.393 0.607 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.211 6.875 1.424 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.133 4.133 3 C -0.119 4.119 4 C -0.127 4.127 5 C -0.123 4.123 6 C 0.305 3.695 7 O -0.462 6.462 8 N -0.356 5.356 9 C 0.062 3.938 10 H 0.095 0.905 11 C -0.174 4.174 12 C 0.024 3.976 13 N -0.336 5.336 14 C -0.382 4.382 15 H 0.070 0.930 16 C -0.229 4.229 17 N -0.601 5.601 18 Si 0.775 3.225 19 H -0.195 1.195 20 H -0.244 1.244 21 H -0.180 1.180 22 C -0.027 4.027 23 C 0.030 3.970 24 H 0.084 0.916 25 O -0.375 6.375 26 C -0.140 4.140 27 C -0.119 4.119 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.241 0.759 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.243 0.757 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.374 7.960 0.939 22.828 hybrid contribution 0.524 -1.585 0.349 1.705 sum -20.850 6.375 1.288 21.841 Atomic orbital electron populations 1.23785 0.94885 1.02517 1.02245 1.22091 0.95462 0.95972 0.99778 1.20829 0.97195 0.95190 0.98664 1.21269 0.96581 0.96017 0.98881 1.21363 0.94262 0.98446 0.98185 1.21145 0.82005 0.80916 0.85477 1.90645 1.74805 1.37158 1.43609 1.45990 1.30641 1.25154 1.33850 1.20731 0.87929 0.93684 0.91462 0.90525 1.22309 0.96832 0.98995 0.99214 1.21020 0.98625 0.83098 0.94838 1.44325 1.10358 1.05700 1.73239 1.18840 0.84666 0.94485 1.40234 0.92971 1.25945 0.98858 0.98152 0.99935 1.69970 1.26215 1.11926 1.51988 0.85924 0.80315 0.78028 0.78231 1.19463 1.24373 1.17985 1.22045 0.91333 0.94934 0.94411 1.22416 0.88132 0.91028 0.95376 0.91588 1.86428 1.36220 1.27426 1.87472 1.21496 0.97203 0.95734 0.99577 1.20820 0.97228 0.95173 0.98670 0.87847 0.87811 0.89879 0.90254 0.91753 0.92771 0.86966 0.75851 0.90491 0.91024 0.94410 0.92333 0.92877 0.92098 0.93943 0.75725 0.92288 0.90748 0.89745 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.77 13.99 67.78 0.95 -1.82 16 2 C -0.13 -2.07 5.35 -16.13 -0.09 -2.15 16 3 C -0.08 -1.26 6.03 30.10 0.18 -1.08 16 4 C -0.09 -1.82 4.54 30.65 0.14 -1.68 16 5 C -0.10 -2.11 2.42 -11.57 -0.03 -2.14 16 6 C 0.52 14.56 7.12 87.65 0.62 15.18 16 7 O -0.58 -20.43 15.60 -3.02 -0.05 -20.48 16 8 N -0.71 -19.85 4.02 -441.93 -1.78 -21.63 16 9 C 0.17 5.24 2.47 45.12 0.11 5.35 16 10 H 0.08 2.57 7.58 -2.39 -0.02 2.56 16 11 C -0.13 -4.28 5.80 30.77 0.18 -4.11 16 12 C 0.15 5.43 6.25 86.36 0.54 5.97 16 13 N -0.61 -26.39 2.77 -699.10 -1.94 -28.33 16 14 C -0.25 -13.58 10.04 84.03 0.84 -12.73 16 15 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 16 C -0.03 -1.88 5.23 84.86 0.44 -1.43 16 17 N -0.96 -57.80 13.97 21.65 0.30 -57.50 16 18 Si 0.95 42.91 24.35 68.60 1.67 44.58 16 19 H -0.27 -11.12 6.62 99.48 0.66 -10.46 16 20 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 21 H -0.26 -10.81 6.64 99.48 0.66 -10.15 16 22 C 0.10 3.69 3.53 86.36 0.30 4.00 16 23 C 0.09 2.94 3.36 30.68 0.10 3.04 16 24 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 25 O -0.57 -15.89 13.21 -148.98 -1.97 -17.86 16 26 C -0.10 -1.87 5.14 30.66 0.16 -1.71 16 27 C -0.08 -1.22 6.03 30.11 0.18 -1.03 16 28 H 0.10 1.27 7.92 -2.91 -0.02 1.25 16 29 H 0.10 1.28 7.92 -2.91 -0.02 1.25 16 30 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.08 1.10 7.89 -2.39 -0.02 1.08 16 32 H 0.06 1.42 7.99 -2.39 -0.02 1.40 16 33 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.40 10.71 6.21 -92.71 -0.58 10.14 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 38 H 0.04 1.29 7.74 -2.38 -0.02 1.28 16 39 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 40 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.06 2.51 4.50 -2.39 -0.01 2.50 16 42 H 0.04 1.50 5.57 -2.39 -0.01 1.49 16 43 H 0.39 8.24 9.08 -74.06 -0.67 7.57 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.32 7.44 -2.39 -0.02 1.31 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 1.07 7.89 -2.39 -0.02 1.05 16 Total: -1.00 -66.90 358.74 0.51 -66.39 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: -0.37 Total: 31.18 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 4.64 Total: 3.65 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -3.41 Total: -107.46 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -2.02 Total: -38.34 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.67 Total: 44.58 kcal Total: -66.90 0.51 -66.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090548188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.955 kcal (2) G-P(sol) polarization free energy of solvation -66.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds