Wall clock time and date at job start Fri Apr 10 2020 17:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46497 * 126.03962 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47267 * 90.00209 * 7 6 2 9 9 O 1.21280 * 119.99663 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00093 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00166 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47281 * 325.00169 * 11 10 8 13 13 C 1.53008 * 109.46822 * 84.99891 * 11 10 8 14 14 C 1.52998 * 109.47587 * 204.99551 * 11 10 8 15 15 C 1.53008 * 109.46586 * 65.00080 * 14 11 10 16 16 C 1.53001 * 109.47086 * 180.02562 * 15 14 11 17 17 C 1.52994 * 109.47126 * 180.02562 * 16 15 14 18 18 N 1.46505 * 109.46908 * 180.02562 * 17 16 15 19 19 C 1.36945 * 119.99911 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99693 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99837 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00183 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99604 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47406 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47175 * 120.00560 * 23 21 19 26 26 H 1.48505 * 109.46927 * 239.99946 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 30 30 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 31 31 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 32 32 H 1.08997 * 109.46689 * 210.00046 * 7 6 2 33 33 H 1.09002 * 109.46868 * 329.99889 * 7 6 2 34 34 H 0.96997 * 120.00051 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47386 * 60.00318 * 13 11 10 36 36 H 1.09000 * 109.46826 * 179.97438 * 13 11 10 37 37 H 1.08994 * 109.46990 * 299.99723 * 13 11 10 38 38 H 1.08992 * 109.47664 * 184.99580 * 14 11 10 39 39 H 1.08998 * 109.47448 * 305.00759 * 14 11 10 40 40 H 1.09000 * 109.47339 * 300.00051 * 15 14 11 41 41 H 1.08998 * 109.46673 * 60.00204 * 15 14 11 42 42 H 1.09000 * 109.46977 * 300.00155 * 16 15 14 43 43 H 1.09001 * 109.47043 * 59.99740 * 16 15 14 44 44 H 1.09000 * 109.47223 * 299.99886 * 17 16 15 45 45 H 1.08997 * 109.47591 * 60.00377 * 17 16 15 46 46 H 0.96996 * 120.00254 * 359.97438 * 18 17 16 47 47 H 0.96999 * 119.99888 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4846 -0.0131 8 6 1.6995 -2.9554 -1.4364 9 8 1.9402 -2.2002 -2.3543 10 7 1.2931 -4.2152 -1.6891 11 6 1.1425 -4.6727 -3.0726 12 1 0.7873 -3.8486 -3.6912 13 6 2.4943 -5.1596 -3.5987 14 6 0.1322 -5.8206 -3.1232 15 6 -1.2487 -5.3029 -2.7155 16 6 -2.2589 -6.4509 -2.7654 17 6 -3.6398 -5.9331 -2.3584 18 7 -4.6070 -7.0325 -2.4056 19 6 -5.9175 -6.8061 -2.0790 20 1 -6.2380 -5.8169 -1.7870 21 6 -6.8340 -7.8476 -2.1243 22 7 -6.4433 -9.0529 -2.4807 23 14 -8.6217 -7.5385 -1.6795 24 1 -8.8017 -6.1098 -1.3170 25 1 -9.4850 -7.8663 -2.8425 26 1 -8.9997 -8.3939 -0.5259 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9741 2.1211 0.0007 31 1 4.5084 1.2891 0.0050 32 1 2.5900 -3.1056 0.4972 33 1 0.8955 -2.5605 0.5007 34 1 1.1003 -4.8191 -0.9549 35 1 2.8495 -5.9837 -2.9802 36 1 2.3822 -5.5004 -4.6280 37 1 3.2140 -4.3418 -3.5628 38 1 0.0860 -6.2196 -4.1364 39 1 0.4423 -6.6081 -2.4363 40 1 -1.2025 -4.9039 -1.7022 41 1 -1.5587 -4.5154 -3.4024 42 1 -2.3051 -6.8503 -3.7786 43 1 -1.9485 -7.2381 -2.0784 44 1 -3.5939 -5.5334 -1.3454 45 1 -3.9500 -5.1461 -3.0458 46 1 -4.3191 -7.9208 -2.6682 47 1 -7.0837 -9.7808 -2.5119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175519290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:26 Heat of formation + Delta-G solvation = 31.823992 kcal Electronic energy + Delta-G solvation = -24714.368404 eV Core-core repulsion = 21126.610178 eV Total energy + Delta-G solvation = -3587.758226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55061 -39.99127 -37.10454 -35.32795 -33.82939 -33.30127 -32.36087 -31.56628 -30.34495 -27.65948 -27.49606 -27.16453 -24.28944 -22.60064 -21.70801 -21.20416 -20.88096 -20.70297 -19.88646 -17.79877 -17.18443 -17.00953 -16.29223 -15.80147 -15.16295 -15.07520 -14.74709 -14.34952 -14.25290 -13.98321 -13.84907 -13.59089 -13.24483 -13.18073 -13.05573 -13.00894 -12.98006 -12.52420 -12.39857 -12.29604 -11.83021 -11.52807 -11.32783 -11.05111 -10.85372 -10.83680 -10.76717 -10.46654 -10.42809 -10.35098 -9.99895 -9.70535 -9.44110 -9.36933 -8.89033 -8.71527 -6.93179 -5.78154 -3.06735 1.55302 2.08349 2.22235 2.66002 2.92018 3.41699 3.47169 3.49607 4.16184 4.25955 4.37599 4.48866 4.59707 4.62086 4.76669 4.82100 4.90583 4.90883 5.17190 5.19192 5.33535 5.39120 5.43774 5.49577 5.50729 5.54083 5.55756 5.63255 5.72308 5.82580 5.90150 5.92556 6.04179 6.12952 6.24601 6.28331 6.34134 6.41154 6.42926 6.69876 6.84947 6.89027 7.13421 7.48882 7.68661 7.84387 8.41208 9.52012 10.11003 10.45370 11.44969 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.002286 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.682270 B =12244.167707 C =13634.500325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.096 3.904 3 C -0.276 4.276 4 C 0.050 3.950 5 N -0.292 5.292 6 N -0.357 5.357 7 C 0.112 3.888 8 C 0.496 3.504 9 O -0.520 6.520 10 N -0.719 5.719 11 C 0.142 3.858 12 H 0.089 0.911 13 C -0.163 4.163 14 C -0.127 4.127 15 C -0.113 4.113 16 C -0.126 4.126 17 C 0.153 3.847 18 N -0.735 5.735 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.017 4.017 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.183 0.817 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.402 0.598 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.015 0.985 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.033 14.844 5.204 26.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.030 4.030 3 C -0.305 4.305 4 C -0.137 4.137 5 N -0.112 5.112 6 N -0.140 5.140 7 C -0.014 4.014 8 C 0.280 3.720 9 O -0.395 6.395 10 N -0.372 5.372 11 C 0.038 3.962 12 H 0.107 0.893 13 C -0.222 4.222 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.164 4.164 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.164 0.836 31 H 0.199 0.801 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.237 0.763 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 21.731 14.296 4.567 26.409 hybrid contribution -1.479 0.153 0.441 1.551 sum 20.252 14.449 5.008 25.377 Atomic orbital electron populations 1.20492 0.87270 1.04329 1.03303 1.21104 0.94700 0.87182 1.00044 1.21207 0.92337 0.98889 1.18058 1.23815 0.98163 0.92133 0.99551 1.77356 0.96146 1.13249 1.24414 1.47905 1.04155 1.04326 1.57600 1.21455 1.03489 0.80585 0.95879 1.20781 0.77502 0.82414 0.91307 1.90776 1.48484 1.54298 1.45953 1.46052 1.68754 1.12890 1.09485 1.21071 0.95476 0.97566 0.82048 0.89342 1.22175 0.97117 1.01422 1.01460 1.21949 0.94469 0.96838 1.03241 1.21520 0.93575 0.98628 1.01438 1.21730 0.95297 0.97567 1.01800 1.20642 0.87957 0.91736 0.97152 1.42403 1.05507 1.07797 1.82225 1.19292 0.85160 0.94961 1.37553 0.91180 1.24761 0.98285 0.95616 1.02570 1.69672 1.33790 1.00178 1.54670 0.86106 0.85147 0.77259 0.77629 1.20556 1.21840 1.21845 0.89966 0.91140 0.89360 0.83552 0.80051 0.85761 0.85905 0.76320 0.92377 0.91399 0.92325 0.90079 0.91216 0.92206 0.91998 0.92023 0.92085 0.96676 0.96597 0.78342 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 9.90 36.01 0.36 -0.32 16 2 C 0.10 0.97 6.93 -82.26 -0.57 0.40 16 3 C -0.28 -2.70 10.72 -40.01 -0.43 -3.13 16 4 C 0.05 0.52 12.03 -17.37 -0.21 0.31 16 5 N -0.29 -3.64 12.58 30.62 0.39 -3.26 16 6 N -0.36 -3.90 3.10 -58.31 -0.18 -4.08 16 7 C 0.11 0.86 6.55 -5.19 -0.03 0.83 16 8 C 0.50 5.04 7.86 -10.99 -0.09 4.95 16 9 O -0.52 -7.74 16.09 5.56 0.09 -7.65 16 10 N -0.72 -5.70 4.53 -53.81 -0.24 -5.95 16 11 C 0.14 1.30 2.57 -67.93 -0.17 1.12 16 12 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 13 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 14 C -0.13 -1.14 4.75 -26.73 -0.13 -1.26 16 15 C -0.11 -1.28 5.10 -26.73 -0.14 -1.42 16 16 C -0.13 -1.90 5.33 -26.73 -0.14 -2.04 16 17 C 0.15 3.04 6.26 -4.04 -0.03 3.01 16 18 N -0.74 -18.85 5.60 -59.91 -0.34 -19.18 16 19 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 22 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 23 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.52 7.72 -51.93 -0.40 0.12 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.12 0.57 7.66 -51.93 -0.40 0.17 16 34 H 0.40 2.13 8.60 -40.82 -0.35 1.78 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.63 7.75 -51.93 -0.40 0.22 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 47 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -36.87 393.89 -8.27 -45.14 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.15 Total: 5.41 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.47 Total: -6.10 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.35 Total: -60.14 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.09 Total: -7.65 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.87 -8.27 -45.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175519290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.965 kcal (2) G-P(sol) polarization free energy of solvation -36.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds