Wall clock time and date at job start Fri Apr 10 2020 17:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46497 * 126.03962 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47267 * 90.00209 * 7 6 2 9 9 O 1.21280 * 119.99663 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00093 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00166 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47281 * 325.00169 * 11 10 8 13 13 C 1.53008 * 109.46822 * 84.99891 * 11 10 8 14 14 C 1.52998 * 109.47587 * 204.99551 * 11 10 8 15 15 C 1.53008 * 109.46586 * 65.00080 * 14 11 10 16 16 C 1.53001 * 109.47086 * 180.02562 * 15 14 11 17 17 C 1.52994 * 109.47126 * 180.02562 * 16 15 14 18 18 N 1.46505 * 109.46908 * 180.02562 * 17 16 15 19 19 C 1.36945 * 119.99911 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99693 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99837 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00183 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99604 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47406 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47175 * 120.00560 * 23 21 19 26 26 H 1.48505 * 109.46927 * 239.99946 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 30 30 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 31 31 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 32 32 H 1.08997 * 109.46689 * 210.00046 * 7 6 2 33 33 H 1.09002 * 109.46868 * 329.99889 * 7 6 2 34 34 H 0.96997 * 120.00051 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47386 * 60.00318 * 13 11 10 36 36 H 1.09000 * 109.46826 * 179.97438 * 13 11 10 37 37 H 1.08994 * 109.46990 * 299.99723 * 13 11 10 38 38 H 1.08992 * 109.47664 * 184.99580 * 14 11 10 39 39 H 1.08998 * 109.47448 * 305.00759 * 14 11 10 40 40 H 1.09000 * 109.47339 * 300.00051 * 15 14 11 41 41 H 1.08998 * 109.46673 * 60.00204 * 15 14 11 42 42 H 1.09000 * 109.46977 * 300.00155 * 16 15 14 43 43 H 1.09001 * 109.47043 * 59.99740 * 16 15 14 44 44 H 1.09000 * 109.47223 * 299.99886 * 17 16 15 45 45 H 1.08997 * 109.47591 * 60.00377 * 17 16 15 46 46 H 0.96996 * 120.00254 * 359.97438 * 18 17 16 47 47 H 0.96999 * 119.99888 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4846 -0.0131 8 6 1.6995 -2.9554 -1.4364 9 8 1.9402 -2.2002 -2.3543 10 7 1.2931 -4.2152 -1.6891 11 6 1.1425 -4.6727 -3.0726 12 1 0.7873 -3.8486 -3.6912 13 6 2.4943 -5.1596 -3.5987 14 6 0.1322 -5.8206 -3.1232 15 6 -1.2487 -5.3029 -2.7155 16 6 -2.2589 -6.4509 -2.7654 17 6 -3.6398 -5.9331 -2.3584 18 7 -4.6070 -7.0325 -2.4056 19 6 -5.9175 -6.8061 -2.0790 20 1 -6.2380 -5.8169 -1.7870 21 6 -6.8340 -7.8476 -2.1243 22 7 -6.4433 -9.0529 -2.4807 23 14 -8.6217 -7.5385 -1.6795 24 1 -8.8017 -6.1098 -1.3170 25 1 -9.4850 -7.8663 -2.8425 26 1 -8.9997 -8.3939 -0.5259 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9741 2.1211 0.0007 31 1 4.5084 1.2891 0.0050 32 1 2.5900 -3.1056 0.4972 33 1 0.8955 -2.5605 0.5007 34 1 1.1003 -4.8191 -0.9549 35 1 2.8495 -5.9837 -2.9802 36 1 2.3822 -5.5004 -4.6280 37 1 3.2140 -4.3418 -3.5628 38 1 0.0860 -6.2196 -4.1364 39 1 0.4423 -6.6081 -2.4363 40 1 -1.2025 -4.9039 -1.7022 41 1 -1.5587 -4.5154 -3.4024 42 1 -2.3051 -6.8503 -3.7786 43 1 -1.9485 -7.2381 -2.0784 44 1 -3.5939 -5.5334 -1.3454 45 1 -3.9500 -5.1461 -3.0458 46 1 -4.3191 -7.9208 -2.6682 47 1 -7.0837 -9.7808 -2.5119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175519290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:25 Heat of formation + Delta-G solvation = 6.668978 kcal Electronic energy + Delta-G solvation = -24715.459207 eV Core-core repulsion = 21126.610178 eV Total energy + Delta-G solvation = -3588.849029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.26426 -40.78483 -38.08610 -36.84791 -34.81327 -34.50125 -33.15541 -32.79177 -31.67238 -28.83906 -28.33618 -27.80758 -25.93540 -23.88905 -22.73525 -22.04157 -21.93449 -21.61161 -20.59170 -19.12502 -18.52562 -17.88566 -17.05909 -16.69479 -16.53354 -16.18161 -15.89384 -15.39182 -15.31352 -15.06383 -14.91992 -14.59468 -14.52542 -14.20503 -14.08402 -13.81431 -13.56934 -13.35528 -13.10319 -13.05793 -12.91136 -12.90019 -12.86818 -12.47562 -12.28659 -12.10932 -11.89246 -11.82597 -11.58409 -11.50484 -11.40858 -11.25727 -10.94676 -10.18985 -10.15241 -9.44220 -9.01185 -7.96811 -5.25887 0.82725 1.44940 1.47077 1.47168 1.48048 1.58260 1.93503 2.23260 2.55252 3.36895 3.53837 3.60542 3.69243 3.77938 4.01673 4.05290 4.09871 4.14071 4.16992 4.32221 4.33920 4.40524 4.59494 4.63543 4.69299 4.75713 4.79645 4.83786 4.87072 4.91315 4.97755 5.01598 5.02068 5.10459 5.24943 5.25832 5.29737 5.42955 5.46557 5.53618 5.55235 5.73585 6.04483 6.26475 6.48249 6.75022 7.15133 7.32055 8.09267 8.31795 9.27029 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.002286 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.682270 B =12244.167707 C =13634.500325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.085 3.915 3 C -0.291 4.291 4 C 0.042 3.958 5 N -0.334 5.334 6 N -0.367 5.367 7 C 0.108 3.892 8 C 0.497 3.503 9 O -0.574 6.574 10 N -0.705 5.705 11 C 0.147 3.853 12 H 0.065 0.935 13 C -0.158 4.158 14 C -0.116 4.116 15 C -0.104 4.104 16 C -0.113 4.113 17 C 0.148 3.852 18 N -0.750 5.750 19 C -0.247 4.247 20 H 0.075 0.925 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.975 3.025 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.291 1.291 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.165 0.835 31 H 0.206 0.794 32 H 0.144 0.856 33 H 0.157 0.843 34 H 0.418 0.582 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.022 0.978 45 H 0.012 0.988 46 H 0.374 0.626 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.864 15.239 6.388 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.042 4.042 3 C -0.320 4.320 4 C -0.144 4.144 5 N -0.154 5.154 6 N -0.150 5.150 7 C -0.017 4.017 8 C 0.282 3.718 9 O -0.453 6.453 10 N -0.358 5.358 11 C 0.042 3.958 12 H 0.083 0.917 13 C -0.216 4.216 14 C -0.154 4.154 15 C -0.142 4.142 16 C -0.151 4.151 17 C 0.022 3.978 18 N -0.393 5.393 19 C -0.378 4.378 20 H 0.093 0.907 21 C -0.271 4.271 22 N -0.621 5.621 23 Si 0.804 3.196 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.218 1.218 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.183 0.817 31 H 0.223 0.777 32 H 0.162 0.838 33 H 0.174 0.826 34 H 0.256 0.744 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.040 0.960 45 H 0.030 0.970 46 H 0.205 0.795 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 21.576 14.696 5.780 26.737 hybrid contribution -1.397 0.069 0.057 1.400 sum 20.179 14.765 5.837 25.676 Atomic orbital electron populations 1.20574 0.85363 1.04496 1.04639 1.21668 0.96053 0.87217 0.99283 1.21581 0.92243 0.99975 1.18204 1.24331 0.99472 0.91966 0.98639 1.77268 0.97632 1.14398 1.26123 1.48145 1.03782 1.05464 1.57580 1.21763 1.05737 0.79701 0.94462 1.21219 0.76429 0.82352 0.91816 1.90755 1.51017 1.55813 1.47692 1.45950 1.67640 1.12589 1.09666 1.20930 0.95713 0.96768 0.82351 0.91700 1.22116 0.96143 1.01011 1.02336 1.21839 0.92728 0.96909 1.03894 1.21423 0.93707 0.96909 1.02162 1.21605 0.93469 0.98819 1.01218 1.20867 0.89322 0.90286 0.97349 1.42664 1.05795 1.08756 1.82076 1.19692 0.86559 0.95080 1.36512 0.90740 1.25619 1.02603 0.95528 1.03339 1.69821 1.35010 1.00970 1.56280 0.85047 0.79850 0.77749 0.76960 1.19005 1.22030 1.21785 0.87910 0.91469 0.88674 0.81718 0.77739 0.83821 0.82572 0.74405 0.90866 0.90660 0.94530 0.89817 0.89445 0.90933 0.92783 0.92739 0.91727 0.96047 0.97000 0.79460 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.90 71.24 0.71 -0.46 16 2 C 0.08 1.63 6.93 41.41 0.29 1.91 16 3 C -0.29 -5.50 10.72 21.99 0.24 -5.26 16 4 C 0.04 0.85 12.03 85.24 1.02 1.87 16 5 N -0.33 -8.31 12.58 -57.03 -0.72 -9.03 16 6 N -0.37 -7.73 3.10 -338.40 -1.05 -8.78 16 7 C 0.11 1.49 6.55 85.63 0.56 2.05 16 8 C 0.50 9.61 7.86 87.66 0.69 10.30 16 9 O -0.57 -17.31 16.09 -3.03 -0.05 -17.36 16 10 N -0.70 -9.89 4.53 -442.54 -2.00 -11.89 16 11 C 0.15 2.47 2.57 44.99 0.12 2.59 16 12 H 0.06 1.44 7.58 -2.39 -0.02 1.43 16 13 C -0.16 -2.55 9.48 71.98 0.68 -1.87 16 14 C -0.12 -1.79 4.75 30.60 0.15 -1.65 16 15 C -0.10 -2.12 5.10 30.60 0.16 -1.97 16 16 C -0.11 -3.24 5.33 30.59 0.16 -3.07 16 17 C 0.15 5.73 6.26 86.38 0.54 6.27 16 18 N -0.75 -38.28 5.60 -343.45 -1.92 -40.20 16 19 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 20 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 21 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 22 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 23 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 27 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.89 7.72 -2.39 -0.02 0.87 16 29 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.21 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.16 1.01 7.66 -2.39 -0.02 1.00 16 34 H 0.42 3.18 8.60 -92.71 -0.80 2.38 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.31 7.75 -2.39 -0.02 1.29 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 45 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.37 20.14 7.67 -92.71 -0.71 19.43 16 47 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -80.71 393.89 2.62 -78.08 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.55 Total: 26.68 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 6.61 Total: -6.36 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -5.41 Total: -128.95 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.05 Total: -17.36 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -80.71 2.62 -78.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175519290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.753 kcal (2) G-P(sol) polarization free energy of solvation -80.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds