Wall clock time and date at job start Fri Apr 10 2020 17:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34664 * 126.59120 * 2 1 4 4 N 1.34134 * 108.01786 * 179.81255 * 3 2 1 5 5 C 1.30496 * 109.25675 * 0.37372 * 4 3 2 6 6 N 1.35047 * 108.70161 * 359.62603 * 5 4 3 7 7 C 1.46497 * 126.40169 * 180.20738 * 6 5 4 8 8 C 1.50695 * 109.46894 * 265.02593 * 7 6 5 9 9 O 1.21281 * 120.00529 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00027 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46839 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.47054 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47025 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46692 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47094 * 180.02562 * 15 14 13 17 17 N 1.46501 * 109.47560 * 179.97438 * 16 15 14 18 18 C 1.36929 * 119.99977 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00549 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99836 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99878 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00094 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47208 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46764 * 120.00067 * 22 20 18 25 25 H 1.48495 * 109.47436 * 239.99980 * 22 20 18 26 26 H 1.08997 * 109.47445 * 269.96014 * 1 2 3 27 27 H 1.09008 * 109.46455 * 29.95840 * 1 2 3 28 28 H 1.08999 * 109.47529 * 149.95028 * 1 2 3 29 29 H 1.08003 * 125.99562 * 0.07282 * 3 2 1 30 30 H 1.08002 * 125.65353 * 179.89694 * 5 4 3 31 31 H 1.09004 * 109.46648 * 25.02578 * 7 6 5 32 32 H 1.08998 * 109.47362 * 145.02540 * 7 6 5 33 33 H 0.96995 * 119.99675 * 0.02562 * 10 8 7 34 34 H 1.09005 * 109.47110 * 300.00358 * 11 10 8 35 35 H 1.08998 * 109.47144 * 60.00085 * 11 10 8 36 36 H 1.09001 * 109.47361 * 299.99411 * 12 11 10 37 37 H 1.08998 * 109.47454 * 59.99944 * 12 11 10 38 38 H 1.08996 * 109.47243 * 300.00246 * 13 12 11 39 39 H 1.09005 * 109.46873 * 60.00135 * 13 12 11 40 40 H 1.08991 * 109.47168 * 299.99823 * 14 13 12 41 41 H 1.09005 * 109.46876 * 60.00515 * 14 13 12 42 42 H 1.09005 * 109.47131 * 300.00345 * 15 14 13 43 43 H 1.08998 * 109.47240 * 60.00145 * 15 14 13 44 44 H 1.09005 * 109.47132 * 300.00000 * 16 15 14 45 45 H 1.09004 * 109.47144 * 59.99343 * 16 15 14 46 46 H 0.97001 * 119.99509 * 0.02562 * 17 16 15 47 47 H 0.97004 * 120.00021 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 0.0042 5 6 3.5968 -0.6509 -0.0013 6 7 2.3229 -1.0991 -0.0008 7 6 1.8942 -2.5000 -0.0016 8 6 1.6286 -2.9432 -1.4172 9 8 1.7826 -2.1657 -2.3352 10 7 1.2207 -4.2040 -1.6633 11 6 0.9630 -4.6351 -3.0395 12 6 0.5152 -6.0980 -3.0402 13 6 0.2454 -6.5481 -4.4775 14 6 -0.2018 -8.0113 -4.4783 15 6 -0.4710 -8.4614 -5.9156 16 6 -0.9188 -9.9244 -5.9165 17 7 -1.1772 -10.3553 -7.2926 18 6 -1.5916 -11.6362 -7.5425 19 1 -1.7285 -12.3288 -6.7252 20 6 -1.8369 -12.0444 -8.8465 21 7 -1.6706 -11.2003 -9.8426 22 14 -2.4016 -13.7920 -9.1876 23 1 -2.5106 -14.5359 -7.9069 24 1 -3.7272 -13.7621 -9.8565 25 1 -1.4168 -14.4671 -10.0704 26 1 -0.3634 -0.0007 1.0276 27 1 -0.3632 0.8905 -0.5132 28 1 -0.3634 -0.8895 -0.5146 29 1 1.9865 2.1118 0.0011 30 1 4.4818 -1.2699 -0.0013 31 1 2.6787 -3.1202 0.4322 32 1 0.9831 -2.6015 0.5880 33 1 1.0979 -4.8260 -0.9292 34 1 0.1786 -4.0150 -3.4736 35 1 1.8743 -4.5333 -3.6288 36 1 1.2993 -6.7183 -2.6061 37 1 -0.3962 -6.1994 -2.4511 38 1 -0.5389 -5.9278 -4.9113 39 1 1.1566 -6.4467 -5.0671 40 1 0.5827 -8.6312 -4.0447 41 1 -1.1130 -8.1130 -3.8887 42 1 -1.2554 -7.8414 -6.3497 43 1 0.4403 -8.3597 -6.5049 44 1 -0.1347 -10.5447 -5.4823 45 1 -1.8302 -10.0257 -5.3272 46 1 -1.0539 -9.7334 -8.0268 47 1 -1.8424 -11.4854 -10.7537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179025899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:47 Heat of formation + Delta-G solvation = 12.693066 kcal Electronic energy + Delta-G solvation = -23535.995604 eV Core-core repulsion = 19947.407799 eV Total energy + Delta-G solvation = -3588.587805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.52671 -40.10652 -36.98878 -35.55995 -34.48937 -34.05380 -32.35913 -31.99944 -30.23323 -28.55416 -26.79866 -26.66315 -24.13857 -22.45811 -21.87416 -21.68594 -21.02120 -20.71551 -20.15272 -18.00945 -17.67296 -17.00117 -16.53169 -16.12763 -15.76493 -15.43590 -14.89255 -14.66776 -14.51126 -14.12303 -13.99496 -13.55221 -13.45669 -13.41712 -13.23337 -13.18556 -12.84792 -12.76762 -12.74708 -12.44726 -11.82332 -11.46020 -11.25951 -10.98448 -10.86361 -10.79302 -10.74158 -10.42809 -10.31394 -10.28462 -9.98659 -9.85730 -9.66451 -9.64256 -8.87094 -8.62642 -6.91044 -5.76185 -3.04707 1.53878 1.93877 2.13899 2.69658 2.88990 3.42930 3.48110 3.50754 3.99164 4.00802 4.29160 4.29231 4.37773 4.42363 4.60630 4.62530 4.72834 4.83843 5.05536 5.08521 5.13258 5.25557 5.29834 5.38586 5.42890 5.48664 5.58394 5.59543 5.61448 5.83352 5.88019 5.91046 5.96215 6.06630 6.27873 6.29055 6.37828 6.40016 6.44260 6.70898 6.88149 6.88213 6.92197 7.56261 7.70304 7.73899 8.43078 9.53856 10.13302 10.47726 11.46977 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.052071 B = 0.001398 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.601567 B =20020.485227 C =20055.581959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.015 4.015 3 C -0.028 4.028 4 N -0.491 5.491 5 C 0.189 3.811 6 N -0.445 5.445 7 C 0.085 3.915 8 C 0.491 3.509 9 O -0.516 6.516 10 N -0.726 5.726 11 C 0.117 3.883 12 C -0.130 4.130 13 C -0.117 4.117 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.169 0.831 30 H 0.203 0.797 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.402 0.598 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 20.296 26.201 33.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C -0.175 4.175 4 N -0.208 5.208 5 C -0.093 4.093 6 N -0.129 5.129 7 C -0.042 4.042 8 C 0.275 3.725 9 O -0.391 6.391 10 N -0.379 5.379 11 C -0.006 4.006 12 C -0.168 4.168 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.186 0.814 30 H 0.220 0.780 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.237 0.763 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.173 21.083 25.552 33.894 hybrid contribution -0.996 -1.775 -0.266 2.053 sum 6.177 19.308 25.286 32.409 Atomic orbital electron populations 1.20216 0.87288 1.03612 1.02389 1.21225 0.94527 0.86678 1.10396 1.22034 0.88356 0.98434 1.08705 1.70270 1.22473 1.08738 1.19296 1.24898 0.86849 0.91892 1.05653 1.44866 1.07527 1.05169 1.55338 1.21657 1.04713 0.81830 0.95986 1.20755 0.78007 0.82560 0.91207 1.90828 1.50032 1.52621 1.45606 1.45992 1.69057 1.12417 1.10391 1.21507 1.01595 0.95650 0.81802 1.21831 1.01874 0.93937 0.99164 1.21524 1.01978 0.97177 0.94810 1.21496 1.01108 0.94688 0.97806 1.21733 1.01439 0.97742 0.95581 1.20655 0.96691 0.91739 0.88459 1.42401 1.81437 1.12148 1.01953 1.19304 1.36884 0.88681 0.92203 0.91157 1.24757 1.02663 0.98117 0.95625 1.69675 1.55734 1.34276 0.98606 0.86108 0.77982 0.84318 0.77744 1.20561 1.21855 1.21847 0.90914 0.89768 0.92017 0.81399 0.77995 0.85610 0.86168 0.76331 0.91182 0.91144 0.91175 0.91197 0.91590 0.91585 0.92080 0.92083 0.92078 0.92069 0.96601 0.96602 0.78334 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.08 36.01 0.36 -0.07 16 2 C -0.01 -0.13 6.95 -81.60 -0.57 -0.69 16 3 C -0.03 -0.28 11.79 -17.81 -0.21 -0.49 16 4 N -0.49 -5.67 11.25 -14.66 -0.16 -5.83 16 5 C 0.19 1.67 12.56 -90.37 -1.13 0.54 16 6 N -0.44 -3.40 2.24 -115.28 -0.26 -3.66 16 7 C 0.09 0.33 6.28 -5.20 -0.03 0.30 16 8 C 0.49 3.53 7.90 -10.98 -0.09 3.44 16 9 O -0.52 -6.51 16.43 5.56 0.09 -6.42 16 10 N -0.73 -3.68 5.56 -60.30 -0.33 -4.02 16 11 C 0.12 0.83 5.67 -4.04 -0.02 0.81 16 12 C -0.13 -0.83 5.33 -26.73 -0.14 -0.98 16 13 C -0.12 -1.06 5.21 -26.73 -0.14 -1.20 16 14 C -0.11 -1.29 5.22 -26.73 -0.14 -1.43 16 15 C -0.13 -2.00 5.33 -26.73 -0.14 -2.14 16 16 C 0.15 3.09 6.26 -4.04 -0.03 3.06 16 17 N -0.74 -19.18 5.60 -59.91 -0.34 -19.52 16 18 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 22 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.35 7.96 -51.93 -0.41 -0.06 16 29 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.20 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.13 0.07 8.13 -51.93 -0.42 -0.35 16 32 H 0.12 0.16 8.02 -51.93 -0.42 -0.26 16 33 H 0.40 0.71 8.47 -40.82 -0.35 0.37 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 47 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 395.57 15.07 5.96 5.96 Total: -1.00 -38.19 395.57 -10.09 -48.28 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -8.22 Total: 2.05 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.53 Total: -6.43 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.37 Total: -60.99 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: 0.09 Total: -6.42 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.19 -10.09 -48.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179025899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.969 kcal (2) G-P(sol) polarization free energy of solvation -38.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds