Wall clock time and date at job start Fri Apr 10 2020 17:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34664 * 126.59120 * 2 1 4 4 N 1.34134 * 108.01786 * 179.81255 * 3 2 1 5 5 C 1.30496 * 109.25675 * 0.37372 * 4 3 2 6 6 N 1.35047 * 108.70161 * 359.62603 * 5 4 3 7 7 C 1.46497 * 126.40169 * 180.20738 * 6 5 4 8 8 C 1.50695 * 109.46894 * 265.02593 * 7 6 5 9 9 O 1.21281 * 120.00529 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00027 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46839 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.47054 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47025 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46692 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47094 * 180.02562 * 15 14 13 17 17 N 1.46501 * 109.47560 * 179.97438 * 16 15 14 18 18 C 1.36929 * 119.99977 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00549 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99836 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99878 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00094 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47208 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46764 * 120.00067 * 22 20 18 25 25 H 1.48495 * 109.47436 * 239.99980 * 22 20 18 26 26 H 1.08997 * 109.47445 * 269.96014 * 1 2 3 27 27 H 1.09008 * 109.46455 * 29.95840 * 1 2 3 28 28 H 1.08999 * 109.47529 * 149.95028 * 1 2 3 29 29 H 1.08003 * 125.99562 * 0.07282 * 3 2 1 30 30 H 1.08002 * 125.65353 * 179.89694 * 5 4 3 31 31 H 1.09004 * 109.46648 * 25.02578 * 7 6 5 32 32 H 1.08998 * 109.47362 * 145.02540 * 7 6 5 33 33 H 0.96995 * 119.99675 * 0.02562 * 10 8 7 34 34 H 1.09005 * 109.47110 * 300.00358 * 11 10 8 35 35 H 1.08998 * 109.47144 * 60.00085 * 11 10 8 36 36 H 1.09001 * 109.47361 * 299.99411 * 12 11 10 37 37 H 1.08998 * 109.47454 * 59.99944 * 12 11 10 38 38 H 1.08996 * 109.47243 * 300.00246 * 13 12 11 39 39 H 1.09005 * 109.46873 * 60.00135 * 13 12 11 40 40 H 1.08991 * 109.47168 * 299.99823 * 14 13 12 41 41 H 1.09005 * 109.46876 * 60.00515 * 14 13 12 42 42 H 1.09005 * 109.47131 * 300.00345 * 15 14 13 43 43 H 1.08998 * 109.47240 * 60.00145 * 15 14 13 44 44 H 1.09005 * 109.47132 * 300.00000 * 16 15 14 45 45 H 1.09004 * 109.47144 * 59.99343 * 16 15 14 46 46 H 0.97001 * 119.99509 * 0.02562 * 17 16 15 47 47 H 0.97004 * 120.00021 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 0.0042 5 6 3.5968 -0.6509 -0.0013 6 7 2.3229 -1.0991 -0.0008 7 6 1.8942 -2.5000 -0.0016 8 6 1.6286 -2.9432 -1.4172 9 8 1.7826 -2.1657 -2.3352 10 7 1.2207 -4.2040 -1.6633 11 6 0.9630 -4.6351 -3.0395 12 6 0.5152 -6.0980 -3.0402 13 6 0.2454 -6.5481 -4.4775 14 6 -0.2018 -8.0113 -4.4783 15 6 -0.4710 -8.4614 -5.9156 16 6 -0.9188 -9.9244 -5.9165 17 7 -1.1772 -10.3553 -7.2926 18 6 -1.5916 -11.6362 -7.5425 19 1 -1.7285 -12.3288 -6.7252 20 6 -1.8369 -12.0444 -8.8465 21 7 -1.6706 -11.2003 -9.8426 22 14 -2.4016 -13.7920 -9.1876 23 1 -2.5106 -14.5359 -7.9069 24 1 -3.7272 -13.7621 -9.8565 25 1 -1.4168 -14.4671 -10.0704 26 1 -0.3634 -0.0007 1.0276 27 1 -0.3632 0.8905 -0.5132 28 1 -0.3634 -0.8895 -0.5146 29 1 1.9865 2.1118 0.0011 30 1 4.4818 -1.2699 -0.0013 31 1 2.6787 -3.1202 0.4322 32 1 0.9831 -2.6015 0.5880 33 1 1.0979 -4.8260 -0.9292 34 1 0.1786 -4.0150 -3.4736 35 1 1.8743 -4.5333 -3.6288 36 1 1.2993 -6.7183 -2.6061 37 1 -0.3962 -6.1994 -2.4511 38 1 -0.5389 -5.9278 -4.9113 39 1 1.1566 -6.4467 -5.0671 40 1 0.5827 -8.6312 -4.0447 41 1 -1.1130 -8.1130 -3.8887 42 1 -1.2554 -7.8414 -6.3497 43 1 0.4403 -8.3597 -6.5049 44 1 -0.1347 -10.5447 -5.4823 45 1 -1.8302 -10.0257 -5.3272 46 1 -1.0539 -9.7334 -8.0268 47 1 -1.8424 -11.4854 -10.7537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179025899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:47 Heat of formation + Delta-G solvation = -12.693871 kcal Electronic energy + Delta-G solvation = -23537.096465 eV Core-core repulsion = 19947.407799 eV Total energy + Delta-G solvation = -3589.688666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.195 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.10356 -40.69514 -37.93904 -36.80259 -35.35357 -35.03814 -33.53684 -32.84950 -31.63500 -29.35189 -27.75805 -27.33357 -25.67886 -23.75210 -22.48536 -22.30557 -22.12857 -21.72213 -20.70493 -19.13403 -18.49713 -18.18821 -17.15149 -16.78669 -16.60626 -16.49931 -16.01286 -15.65460 -15.40029 -15.25559 -15.17452 -14.65700 -14.62332 -14.16144 -13.98718 -13.89405 -13.62283 -13.43900 -13.28656 -13.21455 -13.04699 -12.94601 -12.66704 -12.40134 -12.12936 -12.02305 -11.82111 -11.80556 -11.59250 -11.35126 -11.34954 -10.95405 -10.95210 -10.46054 -10.19879 -9.24215 -9.02431 -7.97474 -5.27038 0.96325 1.43570 1.46421 1.47799 1.58093 1.68910 2.16471 2.27939 2.54920 3.36329 3.59148 3.72314 3.78127 3.80788 3.88527 4.01062 4.01783 4.13982 4.23634 4.25101 4.28742 4.33649 4.51562 4.57759 4.63299 4.72464 4.77716 4.83513 4.84304 4.97278 4.97441 5.01813 5.06460 5.15239 5.28356 5.31509 5.38887 5.39691 5.47431 5.53172 5.56220 5.80387 6.19315 6.25396 6.46923 7.10409 7.13307 7.30755 8.08073 8.30508 9.26583 Molecular weight = 308.20amu Principal moments of inertia in cm(-1) A = 0.052071 B = 0.001398 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.601567 B =20020.485227 C =20055.581959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.064 4.064 4 N -0.536 5.536 5 C 0.181 3.819 6 N -0.446 5.446 7 C 0.086 3.914 8 C 0.491 3.509 9 O -0.579 6.579 10 N -0.708 5.708 11 C 0.121 3.879 12 C -0.116 4.116 13 C -0.115 4.115 14 C -0.103 4.103 15 C -0.118 4.118 16 C 0.148 3.852 17 N -0.752 5.752 18 C -0.250 4.250 19 H 0.077 0.923 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.977 3.023 23 H -0.264 1.264 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.174 0.826 30 H 0.231 0.769 31 H 0.167 0.833 32 H 0.154 0.846 33 H 0.422 0.578 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.372 0.628 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.012 18.782 28.819 34.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.131 4.131 3 C -0.210 4.210 4 N -0.254 5.254 5 C -0.102 4.102 6 N -0.129 5.129 7 C -0.039 4.039 8 C 0.276 3.724 9 O -0.458 6.458 10 N -0.362 5.362 11 C -0.003 4.003 12 C -0.154 4.154 13 C -0.153 4.153 14 C -0.141 4.141 15 C -0.156 4.156 16 C 0.022 3.978 17 N -0.395 5.395 18 C -0.381 4.381 19 H 0.095 0.905 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.806 3.194 23 H -0.188 1.188 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.192 0.808 30 H 0.247 0.753 31 H 0.184 0.816 32 H 0.171 0.829 33 H 0.261 0.739 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.204 0.796 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.718 19.522 28.255 34.994 hybrid contribution -0.855 -1.312 -1.056 1.889 sum 5.863 18.210 27.199 33.253 Atomic orbital electron populations 1.20286 0.85314 1.03698 1.03817 1.21663 0.95806 0.86697 1.08942 1.22347 0.88585 0.99589 1.10461 1.70196 1.23595 1.10597 1.21037 1.25458 0.88270 0.91632 1.04791 1.45056 1.06999 1.06475 1.54400 1.22031 1.07683 0.80185 0.94008 1.21343 0.76731 0.82307 0.91988 1.90814 1.52894 1.54358 1.47735 1.45812 1.67789 1.12297 1.10260 1.21315 1.00275 0.95971 0.82707 1.21685 1.03086 0.93225 0.97365 1.21462 1.01466 0.95605 0.96813 1.21414 1.01989 0.96076 0.94597 1.21652 1.00565 0.94709 0.98670 1.20889 0.96858 0.94498 0.85601 1.42686 1.81437 1.11383 1.03944 1.19739 1.35987 0.89856 0.92549 0.90509 1.25644 1.03514 1.02364 0.95518 1.69835 1.57305 1.36324 0.98781 0.85019 0.77029 0.79444 0.77935 1.18824 1.21901 1.21907 0.88669 0.89623 0.91972 0.80843 0.75302 0.81603 0.82875 0.73941 0.92818 0.92871 0.89658 0.89630 0.92154 0.92208 0.91125 0.91089 0.92859 0.92880 0.96224 0.96203 0.79628 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.08 71.24 0.72 0.01 16 2 C -0.02 -0.27 6.95 40.95 0.28 0.02 16 3 C -0.06 -1.33 11.79 83.52 0.98 -0.34 16 4 N -0.54 -12.73 11.25 -200.31 -2.25 -14.99 16 5 C 0.18 3.07 12.56 180.26 2.26 5.33 16 6 N -0.45 -6.12 2.24 -518.62 -1.16 -7.28 16 7 C 0.09 0.38 6.28 85.63 0.54 0.92 16 8 C 0.49 6.08 7.90 87.65 0.69 6.77 16 9 O -0.58 -14.51 16.43 -3.03 -0.05 -14.56 16 10 N -0.71 -5.26 5.56 -463.06 -2.57 -7.83 16 11 C 0.12 1.53 5.67 86.38 0.49 2.02 16 12 C -0.12 -1.14 5.33 30.60 0.16 -0.98 16 13 C -0.12 -1.89 5.21 30.60 0.16 -1.73 16 14 C -0.10 -2.11 5.22 30.60 0.16 -1.95 16 15 C -0.12 -3.63 5.33 30.59 0.16 -3.47 16 16 C 0.15 5.89 6.26 86.38 0.54 6.43 16 17 N -0.75 -39.43 5.60 -343.44 -1.92 -41.35 16 18 C -0.25 -14.25 9.99 84.04 0.84 -13.41 16 19 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 20 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 21 N -0.97 -60.49 13.06 21.65 0.28 -60.20 16 22 Si 0.98 46.33 29.55 68.60 2.03 48.35 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.06 0.60 7.96 -2.39 -0.02 0.58 16 29 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 30 H 0.23 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.17 -0.58 8.13 -2.38 -0.02 -0.60 16 32 H 0.15 -0.29 8.02 -2.39 -0.02 -0.31 16 33 H 0.42 -0.25 8.47 -92.71 -0.79 -1.04 16 34 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.37 20.75 7.67 -92.71 -0.71 20.04 16 47 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -85.70 395.57 2.27 -83.43 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -0.55 Total: 18.93 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 8.46 Total: -4.50 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -7.63 Total: -131.66 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.05 Total: -14.56 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -85.70 2.27 -83.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179025899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.739 kcal (2) G-P(sol) polarization free energy of solvation -85.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds