Wall clock time and date at job start Fri Apr 10 2020 17:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 120.00186 * 2 1 4 4 H 1.07993 * 120.00321 * 203.09396 * 3 2 1 5 5 C 1.38812 * 119.99746 * 23.09588 * 3 2 1 6 6 N 1.31621 * 120.00042 * 11.88302 * 5 3 2 7 7 Si 1.86800 * 119.99941 * 191.88453 * 5 3 2 8 8 H 1.48492 * 109.47435 * 84.99374 * 7 5 3 9 9 H 1.48504 * 109.47130 * 204.99455 * 7 5 3 10 10 H 1.48506 * 109.46970 * 324.99107 * 7 5 3 11 11 S 1.65599 * 119.99941 * 179.97438 * 2 1 3 12 12 O 1.42094 * 106.40275 * 203.54254 * 11 2 1 13 13 O 1.42102 * 106.39985 * 336.46150 * 11 2 1 14 14 C 1.76194 * 107.21940 * 90.00292 * 11 2 1 15 15 C 1.38323 * 119.88269 * 269.72431 * 14 11 2 16 16 C 1.38024 * 120.11772 * 179.76662 * 15 14 11 17 17 C 1.39298 * 119.88253 * 0.52774 * 16 15 14 18 18 C 1.48466 * 120.11637 * 179.74690 * 17 16 15 19 19 N 1.34050 * 126.66782 * 180.02562 * 18 17 16 20 20 N 1.28986 * 107.26315 * 179.97438 * 19 18 17 21 21 N 1.28729 * 108.94560 * 0.02562 * 20 19 18 22 22 H 0.97007 * 125.34091 * 179.97438 * 21 20 19 23 23 N 1.28872 * 109.31749 * 359.75082 * 21 20 19 24 24 C 1.39297 * 119.76531 * 359.72784 * 17 16 15 25 25 C 1.38033 * 119.88083 * 359.97438 * 24 17 16 26 26 H 1.08994 * 109.47461 * 275.06096 * 1 2 3 27 27 H 1.08997 * 109.46909 * 35.05936 * 1 2 3 28 28 H 1.08997 * 109.47087 * 155.05333 * 1 2 3 29 29 H 0.97004 * 120.00043 * 179.97438 * 6 5 3 30 30 H 1.08003 * 119.93583 * 0.02562 * 15 14 11 31 31 H 1.08006 * 120.06012 * 180.25305 * 16 15 14 32 32 H 1.07998 * 120.06016 * 180.02562 * 24 17 16 33 33 H 1.08000 * 119.94207 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1648 1.2234 -0.3668 5 6 1.5391 2.3398 0.4716 6 7 0.4021 2.2608 1.1298 7 14 2.3311 4.0049 0.1720 8 1 1.9306 4.5101 -1.1657 9 1 1.8838 4.9610 1.2165 10 1 3.8088 3.8673 0.2271 11 16 2.2930 -1.4341 0.0006 12 8 3.5759 -1.1566 0.5450 13 8 1.4113 -2.4062 0.5455 14 6 2.5539 -1.8866 -1.6821 15 6 1.6200 -2.6679 -2.3384 16 6 1.8171 -3.0212 -3.6580 17 6 2.9643 -2.5986 -4.3257 18 6 3.1843 -2.9802 -5.7435 19 7 4.2344 -2.6490 -6.5080 20 7 4.0437 -3.1762 -7.6696 21 7 2.9269 -3.8164 -7.6598 22 1 2.5519 -4.3020 -8.4111 23 7 2.3875 -3.7147 -6.4938 24 6 3.9041 -1.8163 -3.6585 25 6 3.6942 -1.4635 -2.3406 26 1 -0.3634 0.0906 1.0236 27 1 -0.3633 0.8412 -0.5903 28 1 -0.3633 -0.9318 -0.4334 29 1 -0.0244 3.0672 1.4597 30 1 0.7331 -2.9987 -1.8185 31 1 1.0854 -3.6279 -4.1708 32 1 4.7950 -1.4857 -4.1717 33 1 4.4224 -0.8574 -1.8223 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185589402.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:54 Heat of formation + Delta-G solvation = 95.401719 kcal Electronic energy + Delta-G solvation = -22656.374576 eV Core-core repulsion = 19041.200964 eV Total energy + Delta-G solvation = -3615.173613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 309.068 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -44.71023 -39.10223 -36.33098 -35.45468 -34.90643 -34.65986 -33.83341 -31.14410 -31.02630 -30.70402 -26.26446 -25.11464 -24.79451 -23.42641 -22.48407 -21.87550 -19.46515 -18.71153 -17.85981 -17.39247 -16.97514 -16.41473 -16.19238 -15.34099 -14.56633 -14.45153 -14.23840 -14.04876 -13.45381 -13.20843 -13.12012 -13.00157 -12.58861 -12.26219 -11.88036 -11.63314 -11.52946 -11.27367 -11.22166 -11.21474 -11.16694 -11.02030 -10.90585 -10.59816 -10.36154 -10.29504 -10.00197 -9.12464 -8.96462 -8.94011 -7.92154 -6.11211 -3.84418 0.35588 0.91083 1.35809 1.39774 1.96671 2.08083 3.26265 3.32716 3.35573 3.42924 3.59838 3.95134 4.12225 4.44798 4.66279 4.79703 4.93405 5.01586 5.14841 5.19168 5.29510 5.42639 5.66625 5.72488 6.03450 6.05291 6.17226 6.26379 6.28184 6.35168 6.84210 6.90960 7.19441 7.52861 7.68788 7.88128 8.48440 9.04481 9.41431 10.92596 Molecular weight = 309.07amu Principal moments of inertia in cm(-1) A = 0.018783 B = 0.004046 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.334853 B = 6919.416328 C = 7604.896763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.849 5.849 3 C -0.320 4.320 4 H 0.098 0.902 5 C 0.041 3.959 6 N -0.886 5.886 7 Si 0.916 3.084 8 H -0.280 1.280 9 H -0.285 1.285 10 H -0.270 1.270 11 S 2.672 3.328 12 O -0.960 6.960 13 O -0.980 6.980 14 C -0.646 4.646 15 C -0.028 4.028 16 C -0.105 4.105 17 C 0.016 3.984 18 C 0.220 3.780 19 N -0.263 5.263 20 N -0.050 5.050 21 N -0.228 5.228 22 H 0.475 0.525 23 N -0.290 5.290 24 C -0.100 4.100 25 C -0.018 4.018 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.023 0.977 29 H 0.264 0.736 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.407 -10.029 -14.797 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.684 5.684 3 C -0.450 4.450 4 H 0.115 0.885 5 C -0.163 4.163 6 N -0.526 5.526 7 Si 0.743 3.257 8 H -0.206 1.206 9 H -0.211 1.211 10 H -0.195 1.195 11 S 2.759 3.241 12 O -0.950 6.950 13 O -0.970 6.970 14 C -0.729 4.729 15 C -0.047 4.047 16 C -0.126 4.126 17 C 0.013 3.987 18 C -0.060 4.060 19 N -0.136 5.136 20 N -0.045 5.045 21 N -0.074 5.074 22 H 0.330 0.670 23 N -0.141 5.141 24 C -0.121 4.121 25 C -0.037 4.037 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.163 0.837 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.900 -10.432 -14.617 18.058 hybrid contribution -0.306 0.708 -1.206 1.431 sum 1.593 -9.724 -15.822 18.640 Atomic orbital electron populations 1.21146 0.79597 0.97792 1.02613 1.52656 1.12851 1.17940 1.84993 1.19106 0.98898 0.84769 1.42179 0.88454 1.25114 0.96592 0.99102 0.95531 1.70059 1.18142 1.28664 1.35759 0.86128 0.79560 0.82163 0.77833 1.20596 1.21073 1.19454 1.02378 0.73749 0.73291 0.74667 1.93494 1.41177 1.84715 1.75638 1.93493 1.66272 1.61175 1.76084 1.32057 1.02328 1.09065 1.29466 1.20881 0.97438 0.92807 0.93530 1.21201 0.96425 1.00203 0.94755 1.17428 0.96474 0.99232 0.85596 1.23766 0.88811 0.96434 0.96971 1.76115 1.21824 1.19061 0.96629 1.78919 1.02423 1.06442 1.16763 1.47740 1.13609 1.35074 1.10994 0.67030 1.74945 1.24882 1.20944 0.93367 1.21269 0.98985 0.97105 0.94691 1.20934 0.94930 0.94424 0.93390 0.91815 0.91931 0.95808 0.92607 0.83695 0.84502 0.84079 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.05 8.60 59.85 0.51 3.57 16 2 N -0.85 -20.31 3.31 -66.69 -0.22 -20.53 16 3 C -0.32 -8.24 9.17 -15.06 -0.14 -8.38 16 4 H 0.10 2.41 7.68 -52.49 -0.40 2.00 16 5 C 0.04 1.07 5.12 -17.43 -0.09 0.98 16 6 N -0.89 -23.78 10.65 55.49 0.59 -23.19 16 7 Si 0.92 20.29 29.57 -169.99 -5.03 15.26 16 8 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 9 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 S 2.67 57.50 5.60 -107.50 -0.60 56.89 16 12 O -0.96 -22.83 16.36 -57.17 -0.94 -23.77 16 13 O -0.98 -21.97 16.23 -57.17 -0.93 -22.90 16 14 C -0.65 -11.44 5.98 -39.52 -0.24 -11.68 16 15 C -0.03 -0.42 9.51 -39.63 -0.38 -0.80 16 16 C -0.10 -1.43 9.70 -39.27 -0.38 -1.81 16 17 C 0.02 0.23 5.88 -104.89 -0.62 -0.39 16 18 C 0.22 2.86 7.94 -156.31 -1.24 1.62 16 19 N -0.26 -3.47 12.23 32.16 0.39 -3.07 16 20 N -0.05 -0.54 13.47 60.35 0.81 0.27 16 21 N -0.23 -1.82 7.90 60.35 0.48 -1.34 16 22 H 0.48 1.32 8.96 -340.36 -3.05 -1.74 16 23 N -0.29 -3.15 12.08 32.17 0.39 -2.76 16 24 C -0.10 -1.43 9.70 -39.26 -0.38 -1.81 16 25 C -0.02 -0.29 9.51 -39.63 -0.38 -0.67 16 26 H 0.06 1.55 7.34 -51.93 -0.38 1.17 16 27 H 0.06 1.45 7.31 -51.93 -0.38 1.07 16 28 H 0.02 0.45 7.61 -51.93 -0.40 0.06 16 29 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.15 2.04 7.60 -52.48 -0.40 1.64 16 31 H 0.14 1.53 7.88 -52.48 -0.41 1.11 16 32 H 0.14 1.76 7.89 -52.49 -0.41 1.34 16 33 H 0.15 2.32 7.61 -52.49 -0.40 1.92 16 LS Contribution 308.02 15.07 4.64 4.64 Total: -1.00 -32.86 308.02 -9.10 -41.96 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.37 Total: -2.11 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -3.32 Total: -19.35 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 2.44 Total: -50.62 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -1.86 Total: -46.67 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Atomic # 16 Polarization: 57.50 SS G_CDS: -0.60 Total: 56.89 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.86 -9.10 -41.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185589402.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.358 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds