Wall clock time and date at job start Fri Apr 10 2020 17:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30385 * 126.18812 * 2 1 4 4 N 1.28661 * 109.52488 * 180.02562 * 3 2 1 5 5 C 1.31237 * 109.24881 * 0.02562 * 4 3 2 6 6 C 1.47851 * 126.37867 * 179.97438 * 5 4 3 7 7 C 1.39579 * 120.14238 * 180.20844 * 6 5 4 8 8 C 1.37943 * 119.85041 * 180.24720 * 7 6 5 9 9 C 1.38375 * 120.14473 * 359.79513 * 8 7 6 10 10 C 1.38322 * 120.29276 * 0.02562 * 9 8 7 11 11 S 1.76201 * 119.92980 * 179.97438 * 10 9 8 12 12 O 1.42094 * 106.40246 * 23.55491 * 11 10 9 13 13 O 1.42101 * 106.40340 * 156.47680 * 11 10 9 14 14 N 1.65604 * 107.21499 * 270.01659 * 11 10 9 15 15 C 1.36932 * 120.00341 * 64.99929 * 14 11 10 16 16 H 1.08001 * 119.99511 * 0.02562 * 15 14 11 17 17 C 1.38810 * 120.00596 * 179.97438 * 15 14 11 18 18 N 1.31611 * 120.00272 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99509 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47374 * 89.99646 * 19 17 15 21 21 H 1.48504 * 109.46780 * 209.99739 * 19 17 15 22 22 H 1.48503 * 109.47116 * 329.99209 * 19 17 15 23 23 C 1.37992 * 120.14361 * 359.96862 * 10 9 8 24 24 O 1.34417 * 126.18564 * 180.28714 * 2 1 3 25 25 H 1.08997 * 109.46929 * 89.97338 * 1 2 3 26 26 H 1.08996 * 109.47212 * 209.97586 * 1 2 3 27 27 H 1.09004 * 109.46942 * 329.97430 * 1 2 3 28 28 H 1.07999 * 120.07474 * 0.02562 * 7 6 5 29 29 H 1.08003 * 119.92624 * 179.76841 * 8 7 6 30 30 H 1.08007 * 119.85498 * 179.97438 * 9 8 7 31 31 H 0.97003 * 119.99664 * 244.99541 * 14 11 10 32 32 H 0.97000 * 119.99966 * 179.97438 * 18 17 15 33 33 H 1.08002 * 120.07188 * 179.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0523 0.0000 4 7 3.5094 0.6834 -0.0005 5 6 3.5686 -0.6277 -0.0015 6 6 4.7974 -1.4500 -0.0029 7 6 4.7085 -2.8429 -0.0081 8 6 5.8587 -3.6043 -0.0042 9 6 7.0987 -2.9901 0.0006 10 6 7.1937 -1.6101 0.0021 11 16 8.7775 -0.8380 0.0089 12 8 9.6879 -1.7849 -0.5330 13 8 8.5926 0.4618 -0.5348 14 7 9.2120 -0.6249 1.5927 15 6 9.4318 -1.7128 2.3947 16 1 9.3221 -2.7098 1.9943 17 6 9.7966 -1.5342 3.7221 18 7 10.0073 -2.5798 4.4931 19 14 9.9869 0.1903 4.4144 20 1 8.6874 0.6475 4.9688 21 1 11.0089 0.1811 5.4918 22 1 10.4160 1.1133 3.3331 23 6 6.0508 -0.8368 -0.0019 24 8 2.3006 -1.0849 -0.0054 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5143 28 1 3.7413 -3.3235 -0.0116 29 1 5.7914 -4.6823 -0.0045 30 1 7.9963 -3.5908 0.0041 31 1 9.3109 0.2706 1.9522 32 1 10.2625 -2.4550 5.4205 33 1 6.1264 0.2405 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192274937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:59 Heat of formation + Delta-G solvation = -2.262175 kcal Electronic energy + Delta-G solvation = -22538.323469 eV Core-core repulsion = 18886.622081 eV Total energy + Delta-G solvation = -3651.701388 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 309.062 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.24543 -39.05644 -36.30517 -36.27512 -34.91815 -34.80981 -33.58252 -31.60382 -31.34951 -31.15655 -27.98892 -24.49189 -24.27340 -23.42840 -22.17624 -21.84339 -19.09391 -18.52690 -17.92724 -17.55607 -16.77679 -16.50247 -15.86624 -15.49606 -15.04024 -14.92084 -14.57962 -14.04213 -13.74826 -13.72187 -13.23806 -13.16788 -12.98917 -12.71007 -12.50399 -12.14757 -11.93497 -11.63760 -11.51326 -11.21799 -11.18057 -11.06424 -10.97637 -10.54423 -10.47511 -10.28791 -10.16516 -10.07729 -9.21087 -8.57972 -8.54099 -6.51526 -4.00154 0.39262 1.02741 1.36055 1.56643 2.02032 2.38723 3.08521 3.12064 3.15960 3.56843 3.60289 4.03559 4.10524 4.17278 4.56921 4.62126 4.85873 4.88662 4.90399 5.00116 5.06200 5.12634 5.20170 5.25721 5.44772 5.52000 5.63553 5.71566 5.93998 6.16006 6.29290 6.34191 6.75806 6.81758 7.51551 8.16884 8.17120 8.81209 8.94725 10.58467 Molecular weight = 309.06amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.004321 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.030377 B = 6478.789360 C = 6887.575683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.152 3.848 3 N -0.283 5.283 4 N -0.277 5.277 5 C 0.223 3.777 6 C -0.062 4.062 7 C -0.046 4.046 8 C -0.143 4.143 9 C 0.014 3.986 10 C -0.661 4.661 11 S 2.621 3.379 12 O -0.959 6.959 13 O -0.994 6.994 14 N -0.973 5.973 15 C -0.280 4.280 16 H 0.123 0.877 17 C 0.050 3.950 18 N -0.865 5.865 19 Si 0.882 3.118 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.262 1.262 23 C 0.028 3.972 24 O -0.223 6.223 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.148 0.852 31 H 0.392 0.608 32 H 0.277 0.723 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.724 -0.712 -5.904 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.059 4.059 3 N -0.131 5.131 4 N -0.124 5.124 5 C 0.016 3.984 6 C -0.064 4.064 7 C -0.066 4.066 8 C -0.162 4.162 9 C -0.006 4.006 10 C -0.740 4.740 11 S 2.711 3.289 12 O -0.949 6.949 13 O -0.983 6.983 14 N -0.724 5.724 15 C -0.419 4.419 16 H 0.140 0.860 17 C -0.158 4.158 18 N -0.505 5.505 19 Si 0.708 3.292 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.187 1.187 23 C 0.008 3.992 24 O -0.103 6.103 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.166 0.834 31 H 0.227 0.773 32 H 0.088 0.912 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.986 0.573 -6.689 16.421 hybrid contribution -1.082 -0.438 1.099 1.603 sum -16.068 0.135 -5.590 17.013 Atomic orbital electron populations 1.20333 0.80106 1.05689 1.05148 1.28009 0.97757 0.79573 1.00515 1.74398 0.96136 1.25586 1.16991 1.74795 1.11696 1.08244 1.17648 1.25519 0.83284 0.90469 0.99156 1.17264 0.86633 0.91731 1.10816 1.21339 0.99535 0.91759 0.93995 1.21216 0.91958 1.00456 1.02543 1.21268 0.98871 0.93062 0.87378 1.32131 1.24282 1.04712 1.12881 1.06260 0.74876 0.73072 0.74655 1.93501 1.60389 1.63307 1.77702 1.93455 1.86835 1.39369 1.78613 1.52304 1.74077 1.12991 1.33072 1.19070 1.43021 0.86847 0.93003 0.85963 1.25114 0.97102 0.98151 0.95466 1.69712 1.44042 1.29478 1.07315 0.86563 0.79180 0.83707 0.79755 1.19404 1.19982 1.18720 1.20876 0.89029 1.00814 0.88490 1.84803 1.17177 1.38082 1.70263 0.88379 0.88919 0.87514 0.85057 0.84426 0.83426 0.77341 0.91236 0.83210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.32 10.51 36.01 0.38 0.06 16 2 C 0.15 1.82 8.47 -12.89 -0.11 1.71 16 3 N -0.28 -4.42 12.22 32.58 0.40 -4.03 16 4 N -0.28 -4.87 11.92 32.07 0.38 -4.49 16 5 C 0.22 3.56 7.99 -13.87 -0.11 3.45 16 6 C -0.06 -0.99 5.87 -104.98 -0.62 -1.60 16 7 C -0.05 -0.63 9.73 -39.19 -0.38 -1.01 16 8 C -0.14 -1.93 10.03 -39.64 -0.40 -2.33 16 9 C 0.01 0.23 9.52 -39.50 -0.38 -0.15 16 10 C -0.66 -12.13 5.88 -39.64 -0.23 -12.37 16 11 S 2.62 54.46 5.70 -107.50 -0.61 53.85 16 12 O -0.96 -21.86 16.98 -57.17 -0.97 -22.83 16 13 O -0.99 -21.91 17.27 -57.17 -0.99 -22.90 16 14 N -0.97 -21.45 5.55 31.50 0.17 -21.28 16 15 C -0.28 -6.86 10.12 -15.06 -0.15 -7.02 16 16 H 0.12 3.08 8.05 -52.49 -0.42 2.65 16 17 C 0.05 1.27 5.50 -17.43 -0.10 1.17 16 18 N -0.86 -22.94 13.97 55.49 0.78 -22.16 16 19 Si 0.88 18.98 27.74 -169.99 -4.71 14.26 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.26 -5.35 6.52 56.52 0.37 -4.98 16 23 C 0.03 0.50 9.17 -39.19 -0.36 0.14 16 24 O -0.22 -3.02 10.67 4.04 0.04 -2.97 16 25 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.13 1.38 7.94 -52.49 -0.42 0.97 16 29 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.15 2.33 7.61 -52.48 -0.40 1.93 16 31 H 0.39 8.18 5.89 -34.47 -0.20 7.98 16 32 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.15 2.68 7.42 -52.49 -0.39 2.29 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -32.29 313.22 -5.94 -38.22 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -2.69 Total: 7.53 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -2.45 Total: -17.93 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 1.73 Total: -51.96 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -1.92 Total: -48.70 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal Atomic # 16 Polarization: 54.46 SS G_CDS: -0.61 Total: 53.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.29 -5.94 -38.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192274937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.958 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds