Wall clock time and date at job start Fri Apr 10 2020 17:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30385 * 126.18812 * 2 1 4 4 N 1.28661 * 109.52488 * 180.02562 * 3 2 1 5 5 C 1.31237 * 109.24881 * 0.02562 * 4 3 2 6 6 C 1.47851 * 126.37867 * 179.97438 * 5 4 3 7 7 C 1.39579 * 120.14238 * 180.20844 * 6 5 4 8 8 C 1.37943 * 119.85041 * 180.24720 * 7 6 5 9 9 C 1.38375 * 120.14473 * 359.79513 * 8 7 6 10 10 C 1.38322 * 120.29276 * 0.02562 * 9 8 7 11 11 S 1.76201 * 119.92980 * 179.97438 * 10 9 8 12 12 O 1.42094 * 106.40246 * 23.55491 * 11 10 9 13 13 O 1.42101 * 106.40340 * 156.47680 * 11 10 9 14 14 N 1.65604 * 107.21499 * 270.01659 * 11 10 9 15 15 C 1.36932 * 120.00341 * 64.99929 * 14 11 10 16 16 H 1.08001 * 119.99511 * 0.02562 * 15 14 11 17 17 C 1.38810 * 120.00596 * 179.97438 * 15 14 11 18 18 N 1.31611 * 120.00272 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99509 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47374 * 89.99646 * 19 17 15 21 21 H 1.48504 * 109.46780 * 209.99739 * 19 17 15 22 22 H 1.48503 * 109.47116 * 329.99209 * 19 17 15 23 23 C 1.37992 * 120.14361 * 359.96862 * 10 9 8 24 24 O 1.34417 * 126.18564 * 180.28714 * 2 1 3 25 25 H 1.08997 * 109.46929 * 89.97338 * 1 2 3 26 26 H 1.08996 * 109.47212 * 209.97586 * 1 2 3 27 27 H 1.09004 * 109.46942 * 329.97430 * 1 2 3 28 28 H 1.07999 * 120.07474 * 0.02562 * 7 6 5 29 29 H 1.08003 * 119.92624 * 179.76841 * 8 7 6 30 30 H 1.08007 * 119.85498 * 179.97438 * 9 8 7 31 31 H 0.97003 * 119.99664 * 244.99541 * 14 11 10 32 32 H 0.97000 * 119.99966 * 179.97438 * 18 17 15 33 33 H 1.08002 * 120.07188 * 179.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0523 0.0000 4 7 3.5094 0.6834 -0.0005 5 6 3.5686 -0.6277 -0.0015 6 6 4.7974 -1.4500 -0.0029 7 6 4.7085 -2.8429 -0.0081 8 6 5.8587 -3.6043 -0.0042 9 6 7.0987 -2.9901 0.0006 10 6 7.1937 -1.6101 0.0021 11 16 8.7775 -0.8380 0.0089 12 8 9.6879 -1.7849 -0.5330 13 8 8.5926 0.4618 -0.5348 14 7 9.2120 -0.6249 1.5927 15 6 9.4318 -1.7128 2.3947 16 1 9.3221 -2.7098 1.9943 17 6 9.7966 -1.5342 3.7221 18 7 10.0073 -2.5798 4.4931 19 14 9.9869 0.1903 4.4144 20 1 8.6874 0.6475 4.9688 21 1 11.0089 0.1811 5.4918 22 1 10.4160 1.1133 3.3331 23 6 6.0508 -0.8368 -0.0019 24 8 2.3006 -1.0849 -0.0054 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5143 28 1 3.7413 -3.3235 -0.0116 29 1 5.7914 -4.6823 -0.0045 30 1 7.9963 -3.5908 0.0041 31 1 9.3109 0.2706 1.9522 32 1 10.2625 -2.4550 5.4205 33 1 6.1264 0.2405 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192274937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:58 Heat of formation + Delta-G solvation = -30.618989 kcal Electronic energy + Delta-G solvation = -22539.553113 eV Core-core repulsion = 18886.622081 eV Total energy + Delta-G solvation = -3652.931032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 309.062 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.32580 -40.33285 -38.18933 -37.38392 -36.82587 -36.58937 -34.61470 -33.39525 -32.49899 -32.31532 -28.93064 -26.15968 -25.66576 -24.64432 -23.29503 -23.05056 -20.78400 -20.24450 -19.44598 -18.62723 -18.29012 -17.86995 -17.18377 -16.99331 -16.47932 -16.38916 -15.86252 -15.43142 -15.04542 -14.86396 -14.62801 -14.43499 -13.94399 -13.65352 -13.61550 -13.45052 -13.28014 -13.11789 -13.10636 -13.06801 -12.91769 -12.77406 -12.25942 -12.21547 -12.09179 -11.95901 -11.68821 -11.44081 -10.50127 -10.36947 -9.78873 -8.31242 -5.94511 -0.78088 -0.47070 -0.17714 0.46558 0.98462 1.24122 1.37495 1.38559 1.44027 2.19415 2.30685 2.45793 2.60924 2.84897 3.12829 3.26458 3.41394 3.69505 3.74342 3.90472 3.91201 4.16780 4.30569 4.32407 4.43482 4.56095 4.68555 4.69885 4.88380 4.96703 5.03097 5.04892 5.09371 5.58640 5.74771 6.32749 7.00000 7.07760 7.15194 8.83184 Molecular weight = 309.06amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.004321 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.030377 B = 6478.789360 C = 6887.575683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.177 3.823 3 N -0.327 5.327 4 N -0.311 5.311 5 C 0.211 3.789 6 C -0.065 4.065 7 C -0.025 4.025 8 C -0.128 4.128 9 C 0.000 4.000 10 C -0.674 4.674 11 S 2.688 3.312 12 O -0.981 6.981 13 O -0.998 6.998 14 N -0.998 5.998 15 C -0.305 4.305 16 H 0.103 0.897 17 C 0.002 3.998 18 N -0.929 5.929 19 Si 0.927 3.073 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.248 1.248 23 C 0.013 3.987 24 O -0.217 6.217 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.173 0.827 29 H 0.183 0.817 30 H 0.149 0.851 31 H 0.398 0.602 32 H 0.274 0.726 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.405 -1.215 -7.607 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.033 4.033 3 N -0.173 5.173 4 N -0.157 5.157 5 C 0.002 3.998 6 C -0.067 4.067 7 C -0.044 4.044 8 C -0.146 4.146 9 C -0.020 4.020 10 C -0.760 4.760 11 S 2.779 3.221 12 O -0.971 6.971 13 O -0.988 6.988 14 N -0.752 5.752 15 C -0.437 4.437 16 H 0.121 0.879 17 C -0.200 4.200 18 N -0.572 5.572 19 Si 0.750 3.250 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.172 1.172 23 C -0.008 4.008 24 O -0.098 6.098 25 H 0.142 0.858 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.190 0.810 29 H 0.200 0.800 30 H 0.167 0.833 31 H 0.233 0.767 32 H 0.084 0.916 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.578 0.084 -8.283 20.341 hybrid contribution -0.355 -0.272 1.135 1.220 sum -18.933 -0.188 -7.148 20.238 Atomic orbital electron populations 1.20813 0.75559 1.07662 1.07305 1.29294 0.99507 0.78328 0.96214 1.74348 0.95928 1.27198 1.19868 1.74715 1.13223 1.09412 1.18372 1.25373 0.84126 0.90150 1.00149 1.17339 0.85918 0.92982 1.10493 1.21844 1.01412 0.90488 0.90661 1.21660 0.90257 1.02660 1.00014 1.21499 1.00843 0.92081 0.87549 1.31119 1.21550 1.05843 1.17481 1.02169 0.74729 0.72488 0.72681 1.93503 1.61704 1.64150 1.77748 1.93486 1.87385 1.39861 1.78081 1.51643 1.79754 1.12842 1.30992 1.18773 1.45348 0.86482 0.93111 0.87918 1.25630 0.97322 1.01017 0.96014 1.69806 1.48720 1.30993 1.07673 0.85860 0.79121 0.80549 0.79444 1.19017 1.20171 1.17174 1.20813 0.89930 1.00469 0.89559 1.84816 1.16290 1.38335 1.70317 0.85807 0.86253 0.86133 0.80952 0.79989 0.83291 0.76663 0.91647 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.18 3.70 8.47 88.32 0.75 4.45 16 3 N -0.33 -9.73 12.22 -165.32 -2.02 -11.75 16 4 N -0.31 -10.67 11.92 -166.31 -1.98 -12.66 16 5 C 0.21 6.30 7.99 87.33 0.70 7.00 16 6 C -0.06 -1.91 5.87 -20.10 -0.12 -2.02 16 7 C -0.02 -0.55 9.73 22.52 0.22 -0.33 16 8 C -0.13 -2.91 10.03 22.23 0.22 -2.68 16 9 C 0.00 0.00 9.52 22.32 0.21 0.22 16 10 C -0.67 -24.13 5.88 22.23 0.13 -24.00 16 11 S 2.69 111.46 5.70 -56.49 -0.32 111.14 16 12 O -0.98 -44.69 16.98 -128.00 -2.17 -46.86 16 13 O -1.00 -43.37 17.27 -128.00 -2.21 -45.59 16 14 N -1.00 -44.93 5.55 -54.27 -0.30 -45.23 16 15 C -0.30 -15.61 10.12 84.03 0.85 -14.76 16 16 H 0.10 5.48 8.05 -2.91 -0.02 5.46 16 17 C 0.00 0.09 5.50 84.86 0.47 0.55 16 18 N -0.93 -52.42 13.97 21.65 0.30 -52.11 16 19 Si 0.93 40.29 27.74 68.60 1.90 42.19 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.25 -9.93 6.52 99.48 0.65 -9.28 16 23 C 0.01 0.45 9.17 22.53 0.21 0.66 16 24 O -0.22 -5.13 10.67 -8.47 -0.09 -5.22 16 25 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.17 2.53 7.94 -2.91 -0.02 2.51 16 29 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 30 H 0.15 4.56 7.61 -2.91 -0.02 4.53 16 31 H 0.40 16.85 5.89 -96.74 -0.57 16.28 16 32 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.14 5.04 7.42 -2.91 -0.02 5.02 16 Total: -1.00 -74.33 313.22 -1.96 -76.29 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.55 Total: 20.36 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 4.39 Total: -30.57 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -4.00 Total: -121.75 kcal Atomic # 8 Polarization: -93.19 SS G_CDS: -4.47 Total: -97.66 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.90 Total: 42.19 kcal Atomic # 16 Polarization: 111.46 SS G_CDS: -0.32 Total: 111.14 kcal Total: -74.33 -1.96 -76.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192274937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.674 kcal (2) G-P(sol) polarization free energy of solvation -74.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds