Wall clock time and date at job start Fri Apr 10 2020 18:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40064 * 126.08662 * 2 1 4 4 C 1.30846 * 108.42496 * 180.02562 * 3 2 1 5 5 C 1.39775 * 108.43828 * 359.97438 * 4 3 2 6 6 Br 1.89102 * 126.07692 * 179.97438 * 5 4 3 7 7 C 1.35823 * 126.08737 * 180.28474 * 2 1 3 8 8 N 1.39282 * 126.26740 * 0.03316 * 7 2 1 9 9 S 1.65609 * 119.99883 * 57.94230 * 8 7 2 10 10 O 1.42098 * 106.40006 * 175.34088 * 9 8 7 11 11 O 1.42096 * 106.39932 * 308.26419 * 9 8 7 12 12 C 1.76206 * 107.21655 * 61.80000 * 9 8 7 13 13 H 1.07997 * 119.99859 * 0.02562 * 12 9 8 14 14 C 1.37872 * 119.99820 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00061 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00020 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47015 * 90.00253 * 16 14 12 18 18 H 1.48499 * 109.47081 * 210.00242 * 16 14 12 19 19 H 1.48494 * 109.47046 * 329.99989 * 16 14 12 20 20 H 1.08995 * 109.47233 * 89.97200 * 1 2 3 21 21 H 1.08998 * 109.47398 * 209.98128 * 1 2 3 22 22 H 1.09008 * 109.46994 * 329.97635 * 1 2 3 23 23 H 1.08004 * 125.78250 * 180.02562 * 4 3 2 24 24 H 0.96995 * 120.00563 * 237.93947 * 8 7 2 25 25 H 0.97000 * 120.00186 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2900 1.1319 0.0000 4 6 3.5368 0.7349 -0.0006 5 6 3.5557 -0.6627 -0.0003 6 35 5.0991 -1.7555 -0.0016 7 6 2.2650 -1.0976 -0.0055 8 7 1.8429 -2.4249 -0.0127 9 16 0.8670 -2.9767 -1.2316 10 8 0.7067 -4.3722 -1.0166 11 8 -0.2258 -2.0720 -1.3114 12 6 1.7658 -2.8052 -2.7375 13 1 2.7663 -2.3986 -2.7258 14 6 1.1924 -3.1912 -3.9304 15 7 -0.0257 -3.6868 -3.9444 16 14 2.1455 -3.0101 -5.5267 17 1 2.9203 -4.2505 -5.7840 18 1 1.1973 -2.7776 -6.6457 19 1 3.0764 -1.8581 -5.4194 20 1 -0.3633 0.0005 -1.0276 21 1 -0.3634 -0.8901 0.5135 22 1 -0.3633 0.8898 0.5142 23 1 4.4044 1.3782 -0.0003 24 1 2.1204 -3.0260 0.6961 25 1 -0.4291 -3.9587 -4.7836 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192934955.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:01 Heat of formation + Delta-G solvation = -6.283223 kcal Electronic energy + Delta-G solvation = -16462.335833 eV Core-core repulsion = 13457.766450 eV Total energy + Delta-G solvation = -3004.569384 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 308.957 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.00260 -35.66043 -34.71833 -34.33639 -33.21052 -32.89734 -30.60147 -27.85594 -26.27577 -26.08806 -21.08855 -20.67929 -19.27466 -17.92461 -17.15021 -16.70366 -15.34499 -15.10388 -14.66789 -14.19228 -13.90715 -13.58782 -13.41244 -12.53554 -12.25665 -12.06351 -11.43078 -11.27804 -11.15345 -10.91467 -10.70628 -10.64681 -10.54548 -10.35788 -10.16495 -9.71512 -9.34805 -9.07885 -8.73959 -7.99666 -6.83962 -5.46309 1.67233 1.96641 2.12047 2.73445 2.91988 3.02689 3.09539 3.17572 3.95538 4.32878 4.52726 4.83074 5.26082 5.49995 5.52228 5.71686 5.90436 5.97889 6.23973 6.47566 6.58984 7.03066 7.21770 7.45392 7.81665 7.87459 8.77112 10.10652 Molecular weight = 308.96amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.008301 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.310209 B = 3372.270894 C = 4060.394770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.357 5.357 3 N -0.281 5.281 4 C 0.081 3.919 5 C -0.254 4.254 6 Br -0.024 7.024 7 C 0.373 3.627 8 N -1.050 6.050 9 S 2.694 3.306 10 O -0.987 6.987 11 O -0.993 6.993 12 C -1.007 5.007 13 H 0.108 0.892 14 C 0.136 3.864 15 N -0.845 5.845 16 Si 0.922 3.078 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.260 1.260 20 H 0.108 0.892 21 H 0.091 0.909 22 H 0.077 0.923 23 H 0.190 0.810 24 H 0.424 0.576 25 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.426 5.663 7.357 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.142 5.142 3 N -0.104 5.104 4 C -0.106 4.106 5 C -0.349 4.349 6 Br 0.058 6.942 7 C 0.145 3.855 8 N -0.801 5.801 9 S 2.796 3.204 10 O -0.977 6.977 11 O -0.983 6.983 12 C -1.142 5.142 13 H 0.126 0.874 14 C -0.083 4.083 15 N -0.475 5.475 16 Si 0.745 3.255 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.184 1.184 20 H 0.126 0.874 21 H 0.109 0.891 22 H 0.095 0.905 23 H 0.207 0.793 24 H 0.261 0.739 25 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.867 5.917 7.303 11.080 hybrid contribution 1.236 -0.608 -0.885 1.637 sum 7.103 5.309 6.418 10.946 Atomic orbital electron populations 1.22320 0.72082 1.03023 1.06378 1.49055 1.07491 1.02465 1.55224 1.77435 1.00871 1.06717 1.25399 1.23506 0.95695 0.92414 0.98983 1.21268 0.91052 0.94637 1.27939 1.96527 1.32268 1.66908 1.98467 1.17058 0.88483 0.81552 0.98399 1.53716 1.70789 1.11713 1.43845 1.01326 0.73010 0.72619 0.73446 1.93417 1.85678 1.32401 1.86196 1.93382 1.52534 1.65562 1.86830 1.30283 1.15605 1.57292 1.11016 0.87375 1.24720 0.93945 0.88999 1.00603 1.69871 1.13060 1.33738 1.30821 0.86119 0.79958 0.79948 0.79436 1.18938 1.19913 1.18388 0.87407 0.89058 0.90460 0.79326 0.73943 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.75 9.36 59.85 0.56 2.31 15 2 N -0.36 -6.62 4.04 -67.06 -0.27 -6.89 15 3 N -0.28 -4.90 12.56 30.61 0.38 -4.52 15 4 C 0.08 1.26 11.99 -17.40 -0.21 1.05 15 5 C -0.25 -4.36 6.55 -39.74 -0.26 -4.62 15 6 Br -0.02 -0.37 34.06 -68.01 -2.32 -2.69 15 7 C 0.37 7.06 7.07 -152.81 -1.08 5.98 15 8 N -1.05 -20.34 5.76 31.23 0.18 -20.16 15 9 S 2.69 66.42 4.98 -107.50 -0.54 65.88 15 10 O -0.99 -27.12 18.02 -57.17 -1.03 -28.15 15 11 O -0.99 -25.09 12.92 -57.17 -0.74 -25.83 15 12 C -1.01 -26.77 9.61 30.60 0.29 -26.48 15 13 H 0.11 2.75 7.81 -52.49 -0.41 2.34 15 14 C 0.14 3.66 5.46 -17.82 -0.10 3.56 15 15 N -0.85 -23.71 13.19 55.43 0.73 -22.98 15 16 Si 0.92 20.32 29.54 -169.99 -5.02 15.30 15 17 H -0.26 -5.64 7.11 56.52 0.40 -5.23 15 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 19 H -0.26 -5.63 7.11 56.52 0.40 -5.23 15 20 H 0.11 2.06 6.80 -51.93 -0.35 1.71 15 21 H 0.09 1.53 7.11 -51.93 -0.37 1.16 15 22 H 0.08 1.06 8.14 -51.92 -0.42 0.63 15 23 H 0.19 2.16 8.06 -52.48 -0.42 1.74 15 24 H 0.42 6.95 8.95 -34.47 -0.31 6.64 15 25 H 0.29 7.41 8.31 -40.82 -0.34 7.07 15 LS Contribution 261.61 15.07 3.94 3.94 Total: -1.00 -31.95 261.61 -6.89 -38.84 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -1.42 Total: 5.44 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -0.79 Total: -18.19 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 1.02 Total: -54.55 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -1.77 Total: -53.97 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 66.42 SS G_CDS: -0.54 Total: 65.88 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -2.32 Total: -2.69 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.95 -6.89 -38.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192934955.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.556 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds