Wall clock time and date at job start Fri Apr 10 2020 18:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40064 * 126.08662 * 2 1 4 4 C 1.30846 * 108.42496 * 180.02562 * 3 2 1 5 5 C 1.39775 * 108.43828 * 359.97438 * 4 3 2 6 6 Br 1.89102 * 126.07692 * 179.97438 * 5 4 3 7 7 C 1.35823 * 126.08737 * 180.28474 * 2 1 3 8 8 N 1.39282 * 126.26740 * 0.03316 * 7 2 1 9 9 S 1.65609 * 119.99883 * 57.94230 * 8 7 2 10 10 O 1.42098 * 106.40006 * 175.34088 * 9 8 7 11 11 O 1.42096 * 106.39932 * 308.26419 * 9 8 7 12 12 C 1.76206 * 107.21655 * 61.80000 * 9 8 7 13 13 H 1.07997 * 119.99859 * 0.02562 * 12 9 8 14 14 C 1.37872 * 119.99820 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00061 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00020 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47015 * 90.00253 * 16 14 12 18 18 H 1.48499 * 109.47081 * 210.00242 * 16 14 12 19 19 H 1.48494 * 109.47046 * 329.99989 * 16 14 12 20 20 H 1.08995 * 109.47233 * 89.97200 * 1 2 3 21 21 H 1.08998 * 109.47398 * 209.98128 * 1 2 3 22 22 H 1.09008 * 109.46994 * 329.97635 * 1 2 3 23 23 H 1.08004 * 125.78250 * 180.02562 * 4 3 2 24 24 H 0.96995 * 120.00563 * 237.93947 * 8 7 2 25 25 H 0.97000 * 120.00186 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2900 1.1319 0.0000 4 6 3.5368 0.7349 -0.0006 5 6 3.5557 -0.6627 -0.0003 6 35 5.0991 -1.7555 -0.0016 7 6 2.2650 -1.0976 -0.0055 8 7 1.8429 -2.4249 -0.0127 9 16 0.8670 -2.9767 -1.2316 10 8 0.7067 -4.3722 -1.0166 11 8 -0.2258 -2.0720 -1.3114 12 6 1.7658 -2.8052 -2.7375 13 1 2.7663 -2.3986 -2.7258 14 6 1.1924 -3.1912 -3.9304 15 7 -0.0257 -3.6868 -3.9444 16 14 2.1455 -3.0101 -5.5267 17 1 2.9203 -4.2505 -5.7840 18 1 1.1973 -2.7776 -6.6457 19 1 3.0764 -1.8581 -5.4194 20 1 -0.3633 0.0005 -1.0276 21 1 -0.3634 -0.8901 0.5135 22 1 -0.3633 0.8898 0.5142 23 1 4.4044 1.3782 -0.0003 24 1 2.1204 -3.0260 0.6961 25 1 -0.4291 -3.9587 -4.7836 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192934955.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:01 Heat of formation + Delta-G solvation = -30.495297 kcal Electronic energy + Delta-G solvation = -16463.385747 eV Core-core repulsion = 13457.766450 eV Total energy + Delta-G solvation = -3005.619298 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 308.957 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.36246 -37.65117 -36.40578 -36.22380 -35.21036 -34.26120 -31.92905 -29.26069 -28.31288 -27.41978 -22.48568 -22.12442 -21.15038 -19.61917 -18.72910 -18.59521 -17.21638 -16.56927 -16.20955 -15.97587 -15.72903 -14.99420 -14.73373 -14.06914 -13.96005 -13.58366 -13.39399 -13.04876 -12.98599 -12.62765 -12.37986 -12.35968 -12.20410 -11.86814 -11.70730 -11.28230 -11.01159 -11.00883 -10.20194 -9.36086 -8.82196 -7.53927 -0.11560 0.62463 0.65485 1.31488 1.31973 1.44425 1.48001 1.57737 2.16000 2.53162 2.65903 3.44174 3.54784 3.97585 4.14893 4.30656 4.46928 4.54350 4.64522 5.00331 5.22296 5.35421 5.62130 5.85453 5.98306 6.48361 6.74035 8.14316 Molecular weight = 308.96amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.008301 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.310209 B = 3372.270894 C = 4060.394770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.369 5.369 3 N -0.291 5.291 4 C 0.092 3.908 5 C -0.256 4.256 6 Br -0.007 7.007 7 C 0.345 3.655 8 N -1.037 6.037 9 S 2.708 3.292 10 O -1.023 7.023 11 O -1.006 7.006 12 C -1.029 5.029 13 H 0.114 0.886 14 C 0.082 3.918 15 N -0.886 5.886 16 Si 0.980 3.020 17 H -0.253 1.253 18 H -0.260 1.260 19 H -0.253 1.253 20 H 0.083 0.917 21 H 0.088 0.912 22 H 0.111 0.889 23 H 0.231 0.769 24 H 0.436 0.564 25 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.089 6.746 7.105 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.154 5.154 3 N -0.113 5.113 4 C -0.095 4.095 5 C -0.351 4.351 6 Br 0.076 6.924 7 C 0.118 3.882 8 N -0.792 5.792 9 S 2.810 3.190 10 O -1.013 7.013 11 O -0.996 6.996 12 C -1.163 5.163 13 H 0.132 0.868 14 C -0.133 4.133 15 N -0.517 5.517 16 Si 0.799 3.201 17 H -0.177 1.177 18 H -0.184 1.184 19 H -0.177 1.177 20 H 0.101 0.899 21 H 0.106 0.894 22 H 0.129 0.871 23 H 0.248 0.752 24 H 0.275 0.725 25 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.524 6.990 7.068 12.467 hybrid contribution 0.786 -0.891 -0.709 1.384 sum 8.310 6.099 6.359 12.112 Atomic orbital electron populations 1.22302 0.71926 1.04583 1.05195 1.49208 1.07891 1.02649 1.55652 1.77431 1.01606 1.06493 1.25779 1.24192 0.96214 0.92165 0.96937 1.21577 0.91022 0.95728 1.26756 1.96548 1.30845 1.66644 1.98377 1.17319 0.89476 0.81110 1.00338 1.52998 1.70432 1.12589 1.43142 1.00664 0.73085 0.71719 0.73509 1.93365 1.86461 1.34590 1.86866 1.93374 1.53509 1.65448 1.87243 1.30643 1.16138 1.57246 1.12303 0.86801 1.25799 0.94795 0.88333 1.04341 1.69934 1.14654 1.34891 1.32242 0.85260 0.78971 0.80515 0.75404 1.17658 1.18430 1.17685 0.89893 0.89394 0.87116 0.75234 0.72452 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.41 9.36 127.77 1.20 4.60 15 2 N -0.37 -13.29 4.04 -366.08 -1.48 -14.77 15 3 N -0.29 -9.51 12.56 -57.08 -0.72 -10.23 15 4 C 0.09 2.59 11.99 85.21 1.02 3.61 15 5 C -0.26 -8.23 6.55 22.17 0.15 -8.09 15 6 Br -0.01 -0.19 34.06 -20.37 -0.69 -0.89 15 7 C 0.34 12.68 7.07 131.23 0.93 13.61 15 8 N -1.04 -39.89 5.76 -55.10 -0.32 -40.21 15 9 S 2.71 135.04 4.98 -56.49 -0.28 134.75 15 10 O -1.02 -57.26 18.02 -128.00 -2.31 -59.56 15 11 O -1.01 -51.80 12.92 -128.00 -1.65 -53.45 15 12 C -1.03 -54.62 9.61 67.73 0.65 -53.97 15 13 H 0.11 5.71 7.81 -2.91 -0.02 5.69 15 14 C 0.08 4.36 5.46 84.65 0.46 4.83 15 15 N -0.89 -50.14 13.19 21.45 0.28 -49.86 15 16 Si 0.98 40.55 29.54 68.60 2.03 42.58 15 17 H -0.25 -9.89 7.11 99.48 0.71 -9.18 15 18 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 19 H -0.25 -10.11 7.11 99.48 0.71 -9.40 15 20 H 0.08 3.22 6.80 -2.39 -0.02 3.20 15 21 H 0.09 2.97 7.11 -2.39 -0.02 2.96 15 22 H 0.11 2.89 8.14 -2.38 -0.02 2.87 15 23 H 0.23 4.28 8.06 -2.91 -0.02 4.26 15 24 H 0.44 14.17 8.95 -96.75 -0.87 13.30 15 25 H 0.30 15.32 8.31 -92.71 -0.77 14.55 15 Total: -1.00 -67.83 261.61 -0.35 -68.18 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.39 Total: 18.88 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 4.40 Total: -35.41 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -2.23 Total: -115.07 kcal Atomic # 8 Polarization: -109.06 SS G_CDS: -3.96 Total: -113.02 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: 135.04 SS G_CDS: -0.28 Total: 134.75 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -0.69 Total: -0.89 kcal Total: -67.83 -0.35 -68.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192934955.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.681 kcal (2) G-P(sol) polarization free energy of solvation -67.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds