Wall clock time and date at job start Fri Apr 10 2020 18:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.31851 * 119.99783 * 2 1 4 4 N 1.39513 * 119.99857 * 179.97438 * 3 2 1 5 5 C 1.36589 * 126.31596 * 0.82344 * 4 3 2 6 6 N 1.30143 * 109.93986 * 179.97438 * 5 4 3 7 7 C 1.35494 * 109.51908 * 359.45730 * 6 5 4 8 8 C 1.37459 * 126.31550 * 179.97438 * 4 3 2 9 9 N 1.32852 * 134.92052 * 359.97438 * 8 4 3 10 10 C 1.31648 * 120.64339 * 179.97438 * 9 8 4 11 11 N 1.32043 * 122.45839 * 359.97438 * 10 9 8 12 12 C 1.32914 * 121.19105 * 0.02562 * 11 10 9 13 13 N 1.38389 * 120.77224 * 179.97438 * 12 11 10 14 14 S 1.65606 * 120.00106 * 359.97438 * 13 12 11 15 15 O 1.42105 * 106.40008 * 311.45872 * 14 13 12 16 16 O 1.42098 * 106.40370 * 178.54058 * 14 13 12 17 17 C 1.76193 * 107.21910 * 65.00028 * 14 13 12 18 18 H 1.08002 * 120.00351 * 0.02562 * 17 14 13 19 19 C 1.37881 * 120.00314 * 180.02562 * 17 14 13 20 20 N 1.31506 * 120.00315 * 180.02562 * 19 17 14 21 21 Si 1.86797 * 119.99549 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.47295 * 90.00054 * 21 19 17 23 23 H 1.48505 * 109.47129 * 210.00207 * 21 19 17 24 24 H 1.48504 * 109.47322 * 330.00304 * 21 19 17 25 25 H 1.09009 * 109.47122 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47321 * 300.00288 * 1 2 3 27 27 H 1.08993 * 109.47060 * 60.00391 * 1 2 3 28 28 H 1.08001 * 119.99876 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.99924 * 359.97438 * 3 2 1 30 30 H 1.07997 * 125.02536 * 359.39641 * 5 4 3 31 31 H 1.08006 * 118.77432 * 180.02562 * 10 9 8 32 32 H 0.97002 * 120.00284 * 180.02562 * 13 12 11 33 33 H 0.96999 * 119.99997 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1662 1.1419 0.0000 4 7 3.5614 1.1419 0.0005 5 6 4.3703 0.0414 -0.0147 6 7 5.6189 0.4084 -0.0096 7 6 5.6932 1.7612 -0.0029 8 6 4.3754 2.2495 0.0001 9 7 4.1730 3.5625 -0.0013 10 6 5.1901 4.3983 -0.0008 11 7 6.4450 3.9873 0.0016 12 6 6.7453 2.6925 0.0031 13 7 8.0636 2.2715 0.0050 14 16 9.2887 3.3857 0.0048 15 8 8.9794 4.3220 -1.0184 16 8 10.5024 2.6476 0.0418 17 6 9.1945 4.2648 1.5288 18 1 8.4259 4.0198 2.2470 19 6 10.1019 5.2656 1.8048 20 7 10.0319 5.9214 2.9425 21 14 11.4316 5.6889 0.5630 22 1 10.9307 6.7386 -0.3603 23 1 12.6338 6.1898 1.2765 24 1 11.7875 4.4747 -0.2145 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 2.0470 -0.9353 0.0004 29 1 1.6262 2.0772 -0.0004 30 1 4.0248 -0.9818 -0.0200 31 1 4.9908 5.4598 -0.0015 32 1 8.2700 1.3237 0.0057 33 1 10.6700 6.6257 3.1364 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192942893.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:13 Heat of formation + Delta-G solvation = 51.780607 kcal Electronic energy + Delta-G solvation = -22797.832974 eV Core-core repulsion = 19180.767808 eV Total energy + Delta-G solvation = -3617.065166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 309.068 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.74822 -39.48391 -36.28009 -35.86744 -35.50228 -34.53824 -33.02571 -32.64520 -31.84071 -29.44366 -27.10062 -26.41515 -24.42563 -23.64728 -22.44744 -19.85115 -19.55215 -18.82458 -18.17429 -17.36271 -16.88372 -16.75629 -16.26377 -15.60860 -15.02496 -14.79571 -14.31698 -14.19539 -13.91359 -13.69629 -13.53580 -13.35618 -12.93009 -12.86512 -12.21777 -11.98193 -11.88708 -11.51321 -11.37161 -11.26477 -10.85385 -10.68225 -10.53685 -10.34999 -9.96619 -9.84152 -9.18968 -9.02963 -8.94459 -8.76746 -8.08316 -6.77265 -5.29996 0.59571 1.18093 1.72227 1.87316 2.11564 2.78498 3.08384 3.20209 3.26949 3.57736 3.89528 3.96989 4.00220 4.02882 4.30728 4.52845 4.58726 4.65320 4.80697 4.85141 5.02010 5.22607 5.22743 5.26470 5.57943 5.64330 5.87096 5.95447 6.10080 6.28490 6.45149 6.75023 6.92602 7.38589 7.50507 7.51550 8.23393 8.33769 8.71681 10.35072 Molecular weight = 309.07amu Principal moments of inertia in cm(-1) A = 0.032544 B = 0.003886 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.172337 B = 7203.891976 C = 7574.096984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.190 4.190 3 C 0.069 3.931 4 N -0.429 5.429 5 C 0.245 3.755 6 N -0.448 5.448 7 C -0.096 4.096 8 C 0.301 3.699 9 N -0.552 5.552 10 C 0.372 3.628 11 N -0.536 5.536 12 C 0.519 3.481 13 N -1.012 6.012 14 S 2.655 3.345 15 O -0.974 6.974 16 O -0.995 6.995 17 C -0.988 4.988 18 H 0.121 0.879 19 C 0.156 3.844 20 N -0.821 5.821 21 Si 0.802 3.198 22 H -0.244 1.244 23 H -0.255 1.255 24 H -0.223 1.223 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.118 0.882 29 H 0.158 0.842 30 H 0.225 0.775 31 H 0.214 0.786 32 H 0.432 0.568 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.181 -10.307 -4.754 20.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.212 4.212 3 C -0.041 4.041 4 N -0.117 5.117 5 C -0.041 4.041 6 N -0.165 5.165 7 C -0.222 4.222 8 C 0.061 3.939 9 N -0.276 5.276 10 C 0.082 3.918 11 N -0.260 5.260 12 C 0.267 3.733 13 N -0.751 5.751 14 S 2.758 3.242 15 O -0.963 6.963 16 O -0.985 6.985 17 C -1.124 5.124 18 H 0.139 0.861 19 C -0.063 4.063 20 N -0.450 5.450 21 Si 0.622 3.378 22 H -0.167 1.167 23 H -0.179 1.179 24 H -0.145 1.145 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.135 0.865 29 H 0.175 0.825 30 H 0.241 0.759 31 H 0.231 0.769 32 H 0.268 0.732 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.938 -9.480 -5.347 19.300 hybrid contribution -0.131 -0.418 0.346 0.559 sum -16.069 -9.898 -5.001 19.525 Atomic orbital electron populations 1.20648 0.90781 1.02984 1.02422 1.22871 0.97396 0.96673 1.04291 1.21259 0.79447 1.00937 1.02481 1.42582 1.05653 1.04996 1.58518 1.25422 0.84402 0.93083 1.01143 1.70229 1.18394 1.09944 1.17958 1.19775 0.93794 0.92049 1.16593 1.18760 0.88089 0.88337 0.98743 1.67315 1.37626 0.99291 1.23343 1.24726 0.80335 0.99571 0.87137 1.68307 1.23847 1.11961 1.21888 1.17509 0.83845 0.87319 0.84608 1.54002 1.15554 1.24155 1.81432 1.02310 0.70781 0.73295 0.77788 1.93457 1.82761 1.60044 1.60056 1.93527 1.41857 1.73483 1.89619 1.29969 1.26227 1.32511 1.23703 0.86098 1.24346 0.95043 0.92379 0.94574 1.69972 1.34345 1.19204 1.21475 0.87872 0.82824 0.84131 0.83000 1.16750 1.17906 1.14528 0.91345 0.91256 0.91282 0.86458 0.82486 0.75926 0.76936 0.73182 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.17 36.01 0.37 -0.13 16 2 C -0.19 -1.20 9.71 -36.21 -0.35 -1.55 16 3 C 0.07 0.63 10.40 -15.95 -0.17 0.46 16 4 N -0.43 -5.34 2.99 -63.83 -0.19 -5.53 16 5 C 0.25 2.79 11.79 -89.24 -1.05 1.74 16 6 N -0.45 -6.95 11.27 -11.77 -0.13 -7.08 16 7 C -0.10 -1.73 7.16 -84.53 -0.61 -2.34 16 8 C 0.30 4.91 7.99 -155.59 -1.24 3.67 16 9 N -0.55 -9.00 10.46 -13.84 -0.14 -9.15 16 10 C 0.37 6.35 12.25 -92.07 -1.13 5.22 16 11 N -0.54 -11.26 8.54 -13.61 -0.12 -11.37 16 12 C 0.52 10.67 7.39 -154.65 -1.14 9.52 16 13 N -1.01 -21.22 5.83 31.37 0.18 -21.03 16 14 S 2.66 67.61 3.88 -107.50 -0.42 67.19 16 15 O -0.97 -26.19 15.74 -57.17 -0.90 -27.09 16 16 O -0.99 -26.54 16.02 -57.17 -0.92 -27.45 16 17 C -0.99 -27.78 9.91 30.60 0.30 -27.48 16 18 H 0.12 3.50 8.06 -52.49 -0.42 3.08 16 19 C 0.16 4.48 5.47 -17.82 -0.10 4.38 16 20 N -0.82 -23.65 13.96 55.43 0.77 -22.88 16 21 Si 0.80 20.51 26.54 -169.99 -4.51 16.00 16 22 H -0.24 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.22 -5.79 5.61 56.52 0.32 -5.47 16 25 H 0.07 0.24 8.14 -51.92 -0.42 -0.19 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.12 0.57 6.56 -52.49 -0.34 0.23 16 29 H 0.16 1.36 8.05 -52.49 -0.42 0.93 16 30 H 0.22 1.33 6.96 -52.49 -0.37 0.96 16 31 H 0.21 2.77 8.06 -52.48 -0.42 2.34 16 32 H 0.43 7.75 8.85 -34.47 -0.31 7.44 16 33 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 306.59 15.07 4.62 4.62 Total: -1.00 -35.84 306.59 -9.64 -45.49 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.77 Total: 4.79 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -5.12 Total: -6.50 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: 0.37 Total: -77.04 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -1.82 Total: -54.55 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.51 Total: 16.00 kcal Atomic # 16 Polarization: 67.61 SS G_CDS: -0.42 Total: 67.19 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.84 -9.64 -45.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192942893.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.266 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds