Wall clock time and date at job start Fri Apr 10 2020 18:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48498 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46906 * 299.99955 * 3 2 1 6 6 H 1.48493 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37882 * 119.99710 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99522 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00123 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40467 * 66.45839 * 9 7 2 11 11 O 1.42107 * 106.40201 * 293.53691 * 9 7 2 12 12 N 1.65600 * 107.22134 * 180.02562 * 9 7 2 13 13 C 1.39960 * 120.00114 * 64.99369 * 12 9 7 14 14 C 1.40592 * 125.90540 * 180.02562 * 13 12 9 15 15 C 1.35149 * 107.68414 * 179.97438 * 14 13 12 16 16 N 1.35682 * 107.83315 * 0.10541 * 15 14 13 17 17 N 1.31496 * 125.90198 * 0.03250 * 13 12 9 18 18 C 1.46713 * 123.69479 * 179.79653 * 16 15 14 19 19 C 1.53527 * 107.98407 * 343.03115 * 18 16 15 20 20 F 1.39893 * 109.50908 * 287.23534 * 19 18 16 21 21 F 1.39901 * 109.50636 * 167.10997 * 19 18 16 22 22 C 1.53246 * 109.26760 * 47.17596 * 19 18 16 23 23 O 1.35982 * 128.61958 * 180.14194 * 15 14 13 24 24 H 0.97001 * 119.99667 * 359.97438 * 1 2 3 25 25 H 0.96994 * 119.99951 * 245.00689 * 12 9 7 26 26 H 1.07995 * 126.16090 * 0.02562 * 14 13 12 27 27 H 1.08994 * 109.75955 * 223.41025 * 18 16 15 28 28 H 1.08998 * 109.76049 * 102.65563 * 18 16 15 29 29 H 1.08998 * 109.50967 * 55.57085 * 22 19 18 30 30 H 1.09005 * 109.50573 * 175.71171 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2494 11 8 0.4509 -2.7950 1.2501 12 7 2.2482 -3.9355 0.0019 13 6 3.0987 -4.1007 1.1011 14 6 4.0936 -5.0853 1.2332 15 6 4.6908 -4.9072 2.4324 16 7 4.0955 -3.8503 3.0402 17 7 3.1053 -3.3619 2.1889 18 6 4.4744 -3.3558 4.3685 19 6 5.2900 -4.4527 5.0677 20 9 4.4397 -5.4966 5.4477 21 9 5.9130 -3.9205 6.2016 22 6 6.3539 -4.9851 4.1018 23 8 5.7070 -5.6193 2.9886 24 1 -0.4850 0.8401 0.0004 25 1 2.3176 -4.5328 -0.7591 26 1 4.3373 -5.8463 0.5068 27 1 3.5786 -3.1360 4.9492 28 1 5.0792 -2.4547 4.2676 29 1 6.9670 -4.1581 3.7437 30 1 6.9840 -5.7096 4.6178 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952134.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:23 Heat of formation + Delta-G solvation = -156.703711 kcal Electronic energy + Delta-G solvation = -23923.532918 eV Core-core repulsion = 19710.904912 eV Total energy + Delta-G solvation = -4212.628005 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 309.043 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.42068 -48.43763 -42.86236 -39.76688 -37.47956 -36.41290 -36.22017 -35.18336 -34.39727 -31.08521 -30.14849 -28.26320 -27.57845 -24.45582 -22.61586 -21.83883 -20.88179 -20.11715 -19.36190 -18.91673 -18.46385 -17.91435 -17.49089 -17.42158 -17.07537 -16.73063 -16.20187 -16.06703 -15.96508 -15.56770 -15.29032 -15.06897 -14.72058 -14.51482 -14.21246 -14.03954 -13.89138 -13.37247 -13.06456 -13.02591 -12.85728 -12.56923 -12.46713 -12.33212 -12.29382 -11.94250 -11.50911 -11.24944 -10.91792 -9.65701 -9.52482 -8.75339 -7.45448 0.07753 0.64776 0.89332 1.33018 1.33542 1.51503 1.59076 1.71170 1.93430 2.20689 2.34200 2.58891 2.65747 2.89936 3.18016 3.59180 3.63504 3.88555 3.95528 4.11216 4.16666 4.22420 4.32194 4.60907 4.76227 4.82529 5.26794 5.44191 5.90004 5.96251 6.06052 6.60600 6.78688 8.22388 Molecular weight = 309.04amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.004841 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.596834 B = 5782.474517 C = 6528.250273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.993 3.007 4 H -0.250 1.250 5 H -0.256 1.256 6 H -0.260 1.260 7 C -1.014 5.014 8 H 0.113 0.887 9 S 2.709 3.291 10 O -1.026 7.026 11 O -1.018 7.018 12 N -1.015 6.015 13 C 0.331 3.669 14 C -0.285 4.285 15 C 0.277 3.723 16 N -0.403 5.403 17 N -0.323 5.323 18 C 0.082 3.918 19 C 0.259 3.741 20 F -0.195 7.195 21 F -0.165 7.165 22 C 0.014 3.986 23 O -0.265 6.265 24 H 0.299 0.701 25 H 0.440 0.560 26 H 0.193 0.807 27 H 0.120 0.880 28 H 0.149 0.851 29 H 0.136 0.864 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.934 -7.879 8.743 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.140 4.140 3 Si 0.811 3.189 4 H -0.174 1.174 5 H -0.180 1.180 6 H -0.184 1.184 7 C -1.149 5.149 8 H 0.132 0.868 9 S 2.811 3.189 10 O -1.016 7.016 11 O -1.008 7.008 12 N -0.767 5.767 13 C 0.072 3.928 14 C -0.317 4.317 15 C 0.109 3.891 16 N -0.199 5.199 17 N -0.155 5.155 18 C -0.039 4.039 19 C 0.221 3.779 20 F -0.176 7.176 21 F -0.146 7.146 22 C -0.061 4.061 23 O -0.171 6.171 24 H 0.109 0.891 25 H 0.279 0.721 26 H 0.210 0.790 27 H 0.139 0.861 28 H 0.166 0.834 29 H 0.154 0.846 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 16.390 -7.130 9.538 20.260 hybrid contribution 0.487 0.218 -0.381 0.655 sum 16.877 -6.912 9.157 20.407 Atomic orbital electron populations 1.69987 1.08645 1.32291 1.41620 1.25971 0.95389 1.05143 0.87541 0.85071 0.79326 0.75085 0.79429 1.17356 1.18030 1.18441 1.30543 1.06536 1.11457 1.66319 0.86835 1.00468 0.72469 0.74088 0.71897 1.93358 1.73738 1.88040 1.46511 1.93349 1.73539 1.87475 1.46410 1.52991 1.50532 1.49703 1.23478 1.18765 0.91825 0.94338 0.87904 1.20164 1.04306 1.08360 0.98896 1.19372 0.90173 0.87870 0.91675 1.48579 1.29148 1.26600 1.15615 1.77924 1.11140 1.23764 1.02699 1.23073 1.03406 0.97918 0.79498 1.21722 0.88124 0.83727 0.84309 1.93104 1.72588 1.59599 1.92268 1.93115 1.82357 1.86517 1.52594 1.24546 0.92382 1.04548 0.84664 1.86731 1.43408 1.40949 1.46028 0.89055 0.72133 0.78956 0.86150 0.83362 0.84581 0.80412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.60 13.19 21.45 0.28 -53.31 16 2 C 0.07 4.06 5.46 84.65 0.46 4.52 16 3 Si 0.99 41.79 29.54 68.60 2.03 43.82 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 7 C -1.01 -56.89 9.68 67.74 0.66 -56.23 16 8 H 0.11 5.92 7.81 -2.91 -0.02 5.89 16 9 S 2.71 149.68 4.78 -56.49 -0.27 149.41 16 10 O -1.03 -61.08 18.02 -128.00 -2.31 -63.39 16 11 O -1.02 -63.16 17.22 -128.00 -2.20 -65.36 16 12 N -1.01 -42.36 5.91 -54.37 -0.32 -42.69 16 13 C 0.33 13.24 7.72 133.36 1.03 14.27 16 14 C -0.29 -8.68 10.84 22.13 0.24 -8.44 16 15 C 0.28 7.77 7.53 83.39 0.63 8.39 16 16 N -0.40 -12.78 4.06 -458.02 -1.86 -14.64 16 17 N -0.32 -13.90 11.68 -54.31 -0.63 -14.54 16 18 C 0.08 1.82 6.89 86.52 0.60 2.41 16 19 C 0.26 4.40 2.13 30.85 0.07 4.47 16 20 F -0.19 -4.51 16.90 44.97 0.76 -3.75 16 21 F -0.17 -2.43 17.07 44.97 0.77 -1.67 16 22 C 0.01 0.17 6.52 72.06 0.47 0.64 16 23 O -0.26 -5.36 10.53 -93.35 -0.98 -6.34 16 24 H 0.30 16.03 8.31 -92.71 -0.77 15.26 16 25 H 0.44 14.44 8.95 -96.75 -0.87 13.58 16 26 H 0.19 4.37 8.06 -2.91 -0.02 4.34 16 27 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.18 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -84.47 292.69 -0.23 -84.71 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.36 Total: 17.72 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 4.15 Total: -29.96 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -2.53 Total: -125.18 kcal Atomic # 8 Polarization: -129.60 SS G_CDS: -5.49 Total: -135.10 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 1.53 Total: -5.41 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 149.68 SS G_CDS: -0.27 Total: 149.41 kcal Total: -84.47 -0.23 -84.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952134.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.998 kcal (2) G-P(sol) polarization free energy of solvation -84.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds