Wall clock time and date at job start Fri Apr 10 2020 18:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40478 * 120.14840 * 2 1 4 4 C 1.34953 * 120.29845 * 180.02562 * 3 2 1 5 5 N 1.36483 * 120.60848 * 359.97438 * 4 3 2 6 6 C 1.36832 * 132.56670 * 180.02562 * 5 4 3 7 7 C 1.35102 * 107.18129 * 179.97438 * 6 5 4 8 8 C 1.50697 * 125.68964 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47343 * 94.99269 * 8 7 6 10 10 C 1.46497 * 120.00117 * 274.99777 * 9 8 7 11 11 S 1.65608 * 119.99720 * 95.00167 * 9 8 7 12 12 O 1.42104 * 106.39724 * 203.53944 * 11 9 8 13 13 O 1.42097 * 106.40199 * 336.45856 * 11 9 8 14 14 C 1.76195 * 107.21632 * 90.00113 * 11 9 8 15 15 H 1.08001 * 120.00866 * 359.97438 * 14 11 9 16 16 C 1.37878 * 119.99874 * 179.97438 * 14 11 9 17 17 N 1.31516 * 120.00340 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 120.00151 * 359.97438 * 16 14 11 19 19 H 1.48503 * 109.46898 * 89.99759 * 18 16 14 20 20 H 1.48497 * 109.47266 * 210.00322 * 18 16 14 21 21 H 1.48500 * 109.47080 * 330.00395 * 18 16 14 22 22 N 1.33514 * 108.62556 * 0.23648 * 7 6 5 23 23 C 1.32560 * 109.15587 * 359.60127 * 22 7 6 24 24 C 1.36016 * 120.15614 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47663 * 269.97348 * 1 2 3 26 26 H 1.09000 * 109.47776 * 29.98177 * 1 2 3 27 27 H 1.09012 * 109.46860 * 149.97884 * 1 2 3 28 28 H 1.07999 * 119.84767 * 0.02562 * 3 2 1 29 29 H 1.07993 * 119.69272 * 179.97438 * 4 3 2 30 30 H 1.08004 * 126.41193 * 359.93534 * 6 5 4 31 31 H 1.09000 * 109.47023 * 334.99260 * 8 7 6 32 32 H 1.09001 * 109.47293 * 214.99578 * 8 7 6 33 33 H 1.08999 * 109.47289 * 269.99989 * 10 9 8 34 34 H 1.09000 * 109.47051 * 30.00767 * 10 9 8 35 35 H 1.09006 * 109.47040 * 149.99903 * 10 9 8 36 36 H 0.96998 * 120.00705 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.33601 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2125 1.2148 0.0000 4 6 3.5620 1.2183 -0.0005 5 7 4.2600 0.0454 -0.0005 6 6 5.5994 -0.2346 -0.0005 7 6 5.7259 -1.5797 0.0000 8 6 7.0268 -2.3403 -0.0003 9 7 7.3885 -2.6900 1.3756 10 6 8.1134 -1.7280 2.2095 11 16 6.9779 -4.1727 1.9883 12 8 6.9404 -4.0266 3.4013 13 8 5.8702 -4.6298 1.2246 14 6 8.3112 -5.2696 1.6368 15 1 9.1818 -4.9098 1.1086 16 6 8.2432 -6.5876 2.0360 17 7 9.2386 -7.4063 1.7741 18 14 6.7378 -7.2101 2.9502 19 1 5.7386 -7.7132 1.9736 20 1 7.1341 -8.3109 3.8647 21 1 6.1439 -6.1009 3.7390 22 7 4.5062 -2.1227 -0.0048 23 6 3.5995 -1.1557 0.0002 24 6 2.1903 -1.1761 -0.0005 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6725 2.1500 0.0004 29 1 4.0945 2.1578 -0.0009 30 1 6.4048 0.4850 -0.0015 31 1 7.8103 -1.7200 -0.4355 32 1 6.9152 -3.2508 -0.5892 33 1 9.1862 -1.8741 2.0838 34 1 7.8471 -0.7144 1.9099 35 1 7.8460 -1.8798 3.2553 36 1 9.1906 -8.3336 2.0546 37 1 1.6583 -2.1160 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:37 Heat of formation + Delta-G solvation = 19.485379 kcal Electronic energy + Delta-G solvation = -23331.570200 eV Core-core repulsion = 19816.644952 eV Total energy + Delta-G solvation = -3514.925249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.093 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.69212 -37.97117 -35.60774 -35.48800 -34.21446 -34.04777 -32.92328 -30.89309 -29.94185 -28.09770 -26.34448 -26.27265 -24.20998 -23.04838 -21.85739 -20.30469 -18.62698 -17.83101 -17.31599 -16.68612 -16.43863 -15.89527 -15.47563 -15.10117 -14.99923 -14.63003 -14.16249 -13.93285 -13.67761 -13.33341 -13.13884 -12.82256 -12.69113 -12.53531 -12.26643 -12.14883 -11.75362 -11.69376 -11.39017 -11.23649 -11.01827 -10.66065 -10.63613 -10.38498 -10.21732 -9.77259 -9.69344 -9.11503 -9.00968 -8.68804 -8.24843 -7.73477 -6.71684 -5.23996 0.70805 1.25849 2.12714 2.64088 2.93728 3.14990 3.27177 3.36742 3.57349 4.05040 4.18290 4.32902 4.37727 4.62437 4.66774 4.68953 4.96400 5.08771 5.30512 5.32728 5.34493 5.49191 5.53037 5.58585 5.64207 5.72696 5.79400 5.95659 6.02211 6.17160 6.20357 6.26700 6.29439 6.47126 6.61354 6.75252 7.14192 7.45208 7.57476 8.13670 8.30075 8.80366 10.40793 Molecular weight = 309.09amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.004217 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.277084 B = 6637.731606 C = 7320.016035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.083 4.083 3 C -0.144 4.144 4 C 0.058 3.942 5 N -0.368 5.368 6 C -0.092 4.092 7 C 0.053 3.947 8 C 0.207 3.793 9 N -0.999 5.999 10 C 0.093 3.907 11 S 2.672 3.328 12 O -1.011 7.011 13 O -0.985 6.985 14 C -1.017 5.017 15 H 0.120 0.880 16 C 0.154 3.846 17 N -0.827 5.827 18 Si 0.801 3.199 19 H -0.245 1.245 20 H -0.256 1.256 21 H -0.220 1.220 22 N -0.450 5.450 23 C 0.216 3.784 24 C -0.074 4.074 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.160 0.840 30 H 0.182 0.818 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.280 0.720 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.162 19.342 -4.939 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.089 4.089 3 C -0.165 4.165 4 C -0.064 4.064 5 N -0.041 5.041 6 C -0.224 4.224 7 C -0.083 4.083 8 C 0.079 3.921 9 N -0.834 5.834 10 C -0.053 4.053 11 S 2.774 3.226 12 O -1.002 7.002 13 O -0.975 6.975 14 C -1.151 5.151 15 H 0.138 0.862 16 C -0.065 4.065 17 N -0.456 5.456 18 Si 0.621 3.379 19 H -0.168 1.168 20 H -0.181 1.181 21 H -0.142 1.142 22 N -0.169 5.169 23 C -0.028 4.028 24 C -0.094 4.094 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.164 0.836 29 H 0.177 0.823 30 H 0.199 0.801 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.935 18.190 -4.485 22.214 hybrid contribution 0.460 0.432 0.162 0.652 sum -11.475 18.623 -4.323 22.298 Atomic orbital electron populations 1.20729 0.89894 1.03134 1.02715 1.19676 0.96843 0.92028 1.00317 1.20634 0.92140 0.99040 1.04725 1.21527 0.93025 0.88834 1.03057 1.42916 1.07475 1.07427 1.46279 1.22430 0.83290 0.98227 1.18469 1.21616 0.95042 0.90471 1.01139 1.19385 0.88779 1.00015 0.83907 1.57507 1.72249 1.33016 1.20604 1.21390 0.95981 0.92346 0.95629 1.01671 0.75672 0.72258 0.73006 1.93428 1.88758 1.86011 1.31973 1.93475 1.53268 1.79095 1.71632 1.30618 1.24253 1.08353 1.51885 0.86217 1.24419 0.95617 0.95310 0.91169 1.69994 1.30200 1.05871 1.39535 0.87876 0.83731 0.83899 0.82426 1.16842 1.18056 1.14222 1.70965 0.98290 1.27988 1.19698 1.21147 0.94631 0.80362 1.06631 1.20158 0.88440 0.99573 1.01229 0.90787 0.91273 0.91035 0.83594 0.82291 0.80136 0.89303 0.87845 0.92956 0.92315 0.90435 0.91017 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.02 36.00 0.36 -0.36 16 2 C -0.08 -0.83 5.88 -104.58 -0.62 -1.44 16 3 C -0.14 -1.23 9.67 -39.90 -0.39 -1.61 16 4 C 0.06 0.56 10.95 -16.65 -0.18 0.38 16 5 N -0.37 -5.12 2.94 -62.66 -0.18 -5.31 16 6 C -0.09 -1.30 11.66 -16.44 -0.19 -1.49 16 7 C 0.05 0.95 6.64 -82.98 -0.55 0.40 16 8 C 0.21 3.69 5.85 -5.20 -0.03 3.66 16 9 N -1.00 -20.68 3.17 -123.05 -0.39 -21.07 16 10 C 0.09 1.55 10.68 59.85 0.64 2.19 16 11 S 2.67 71.23 4.15 -107.50 -0.45 70.78 16 12 O -1.01 -28.76 14.62 -57.17 -0.84 -29.59 16 13 O -0.98 -27.99 15.81 -57.17 -0.90 -28.89 16 14 C -1.02 -29.58 10.29 30.60 0.31 -29.27 16 15 H 0.12 3.48 8.06 -52.49 -0.42 3.06 16 16 C 0.15 4.59 5.47 -17.82 -0.10 4.50 16 17 N -0.83 -24.62 13.96 55.43 0.77 -23.85 16 18 Si 0.80 21.55 26.54 -169.99 -4.51 17.03 16 19 H -0.24 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.26 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.22 -6.09 5.60 56.52 0.32 -5.77 16 22 N -0.45 -9.26 11.32 -9.01 -0.10 -9.36 16 23 C 0.22 3.64 7.81 -156.04 -1.22 2.42 16 24 C -0.07 -0.99 9.75 -39.36 -0.38 -1.38 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 27 H 0.07 0.45 8.08 -51.92 -0.42 0.04 16 28 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.18 1.77 8.06 -52.48 -0.42 1.35 16 31 H 0.09 1.18 8.11 -51.93 -0.42 0.75 16 32 H 0.10 2.00 7.61 -51.93 -0.40 1.61 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 36 H 0.28 7.55 8.31 -40.82 -0.34 7.22 16 37 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -38.41 328.85 -8.60 -47.01 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.62 Total: 0.30 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -2.34 Total: -22.01 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.10 Total: -59.60 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -1.74 Total: -58.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.51 Total: 17.03 kcal Atomic # 16 Polarization: 71.23 SS G_CDS: -0.45 Total: 70.78 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -38.41 -8.60 -47.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.499 kcal (2) G-P(sol) polarization free energy of solvation -38.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds