Wall clock time and date at job start Fri Apr 10 2020 18:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40478 * 120.14840 * 2 1 4 4 C 1.34953 * 120.29845 * 180.02562 * 3 2 1 5 5 N 1.36483 * 120.60848 * 359.97438 * 4 3 2 6 6 C 1.36832 * 132.56670 * 180.02562 * 5 4 3 7 7 C 1.35102 * 107.18129 * 179.97438 * 6 5 4 8 8 C 1.50697 * 125.68964 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47343 * 94.99269 * 8 7 6 10 10 C 1.46497 * 120.00117 * 274.99777 * 9 8 7 11 11 S 1.65608 * 119.99720 * 95.00167 * 9 8 7 12 12 O 1.42104 * 106.39724 * 203.53944 * 11 9 8 13 13 O 1.42097 * 106.40199 * 336.45856 * 11 9 8 14 14 C 1.76195 * 107.21632 * 90.00113 * 11 9 8 15 15 H 1.08001 * 120.00866 * 359.97438 * 14 11 9 16 16 C 1.37878 * 119.99874 * 179.97438 * 14 11 9 17 17 N 1.31516 * 120.00340 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 120.00151 * 359.97438 * 16 14 11 19 19 H 1.48503 * 109.46898 * 89.99759 * 18 16 14 20 20 H 1.48497 * 109.47266 * 210.00322 * 18 16 14 21 21 H 1.48500 * 109.47080 * 330.00395 * 18 16 14 22 22 N 1.33514 * 108.62556 * 0.23648 * 7 6 5 23 23 C 1.32560 * 109.15587 * 359.60127 * 22 7 6 24 24 C 1.36016 * 120.15614 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47663 * 269.97348 * 1 2 3 26 26 H 1.09000 * 109.47776 * 29.98177 * 1 2 3 27 27 H 1.09012 * 109.46860 * 149.97884 * 1 2 3 28 28 H 1.07999 * 119.84767 * 0.02562 * 3 2 1 29 29 H 1.07993 * 119.69272 * 179.97438 * 4 3 2 30 30 H 1.08004 * 126.41193 * 359.93534 * 6 5 4 31 31 H 1.09000 * 109.47023 * 334.99260 * 8 7 6 32 32 H 1.09001 * 109.47293 * 214.99578 * 8 7 6 33 33 H 1.08999 * 109.47289 * 269.99989 * 10 9 8 34 34 H 1.09000 * 109.47051 * 30.00767 * 10 9 8 35 35 H 1.09006 * 109.47040 * 149.99903 * 10 9 8 36 36 H 0.96998 * 120.00705 * 180.02562 * 17 16 14 37 37 H 1.08001 * 120.33601 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2125 1.2148 0.0000 4 6 3.5620 1.2183 -0.0005 5 7 4.2600 0.0454 -0.0005 6 6 5.5994 -0.2346 -0.0005 7 6 5.7259 -1.5797 0.0000 8 6 7.0268 -2.3403 -0.0003 9 7 7.3885 -2.6900 1.3756 10 6 8.1134 -1.7280 2.2095 11 16 6.9779 -4.1727 1.9883 12 8 6.9404 -4.0266 3.4013 13 8 5.8702 -4.6298 1.2246 14 6 8.3112 -5.2696 1.6368 15 1 9.1818 -4.9098 1.1086 16 6 8.2432 -6.5876 2.0360 17 7 9.2386 -7.4063 1.7741 18 14 6.7378 -7.2101 2.9502 19 1 5.7386 -7.7132 1.9736 20 1 7.1341 -8.3109 3.8647 21 1 6.1439 -6.1009 3.7390 22 7 4.5062 -2.1227 -0.0048 23 6 3.5995 -1.1557 0.0002 24 6 2.1903 -1.1761 -0.0005 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6725 2.1500 0.0004 29 1 4.0945 2.1578 -0.0009 30 1 6.4048 0.4850 -0.0015 31 1 7.8103 -1.7200 -0.4355 32 1 6.9152 -3.2508 -0.5892 33 1 9.1862 -1.8741 2.0838 34 1 7.8471 -0.7144 1.9099 35 1 7.8460 -1.8798 3.2553 36 1 9.1906 -8.3336 2.0546 37 1 1.6583 -2.1160 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:37 Heat of formation + Delta-G solvation = -9.401806 kcal Electronic energy + Delta-G solvation = -23332.822843 eV Core-core repulsion = 19816.644952 eV Total energy + Delta-G solvation = -3516.177891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.093 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.70892 -38.91375 -37.65902 -36.99239 -36.39679 -35.19185 -35.02136 -31.93773 -30.76921 -29.23396 -28.54939 -27.38413 -25.47937 -24.00695 -22.77542 -21.50478 -20.71587 -19.20103 -18.75220 -18.60086 -17.50921 -17.28126 -17.05588 -16.63656 -16.14402 -15.71904 -15.58293 -15.26210 -15.12454 -14.86990 -14.74016 -14.25179 -14.12109 -13.71736 -13.46603 -13.37635 -13.08506 -13.05333 -12.86010 -12.59924 -12.53077 -12.50533 -12.41173 -12.22840 -11.76655 -11.51707 -11.36229 -11.15058 -10.89984 -9.92284 -9.65579 -8.99008 -8.71031 -7.52872 -0.15496 0.14570 0.36333 0.99905 1.10762 1.18555 1.73315 1.84691 1.87239 2.39892 2.50966 2.66836 3.24907 3.44445 3.54053 3.84534 3.86218 4.06275 4.09585 4.19734 4.31748 4.42804 4.47322 4.65785 4.70601 4.80044 4.85505 4.85551 4.87615 4.98466 5.08631 5.10925 5.24222 5.38844 5.43227 5.64323 5.66819 5.88311 5.99575 6.23878 6.52221 7.05078 8.18985 Molecular weight = 309.09amu Principal moments of inertia in cm(-1) A = 0.023818 B = 0.004217 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.277084 B = 6637.731606 C = 7320.016035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.055 4.055 3 C -0.141 4.141 4 C 0.055 3.945 5 N -0.372 5.372 6 C -0.071 4.071 7 C 0.009 3.991 8 C 0.202 3.798 9 N -0.996 5.996 10 C 0.083 3.917 11 S 2.688 3.312 12 O -1.035 7.035 13 O -1.011 7.011 14 C -1.038 5.038 15 H 0.108 0.892 16 C 0.111 3.889 17 N -0.852 5.852 18 Si 0.822 3.178 19 H -0.242 1.242 20 H -0.214 1.214 21 H -0.236 1.236 22 N -0.529 5.529 23 C 0.195 3.805 24 C -0.128 4.128 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.194 0.806 29 H 0.206 0.794 30 H 0.229 0.771 31 H 0.140 0.860 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.291 0.709 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.263 23.468 -5.038 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.061 4.061 3 C -0.161 4.161 4 C -0.066 4.066 5 N -0.044 5.044 6 C -0.202 4.202 7 C -0.124 4.124 8 C 0.076 3.924 9 N -0.835 5.835 10 C -0.061 4.061 11 S 2.788 3.212 12 O -1.026 7.026 13 O -1.001 7.001 14 C -1.170 5.170 15 H 0.126 0.874 16 C -0.105 4.105 17 N -0.483 5.483 18 Si 0.639 3.361 19 H -0.165 1.165 20 H -0.136 1.136 21 H -0.159 1.159 22 N -0.250 5.250 23 C -0.049 4.049 24 C -0.148 4.148 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.211 0.789 29 H 0.223 0.777 30 H 0.246 0.754 31 H 0.158 0.842 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.013 22.292 -4.580 26.215 hybrid contribution 0.687 -0.623 0.110 0.934 sum -12.326 21.669 -4.470 25.327 Atomic orbital electron populations 1.20864 0.87426 1.04546 1.03757 1.20200 0.98592 0.91466 0.95811 1.21265 0.92075 1.00008 1.02776 1.22469 0.93868 0.88835 1.01443 1.43129 1.07465 1.07877 1.45922 1.22917 0.84315 0.97355 1.15654 1.21629 0.94134 0.92344 1.04322 1.19632 0.91071 0.99844 0.81818 1.57074 1.72660 1.31413 1.22317 1.21712 0.96554 0.93728 0.94133 1.00925 0.74625 0.73286 0.72351 1.93381 1.88840 1.86886 1.33453 1.93436 1.53969 1.80707 1.72015 1.31109 1.24943 1.09406 1.51565 0.87397 1.25097 0.97601 0.95856 0.91994 1.70001 1.31179 1.06769 1.40349 0.87541 0.81653 0.84430 0.82430 1.16514 1.13559 1.15912 1.70801 1.00191 1.30963 1.23000 1.21430 0.95448 0.81170 1.06813 1.20290 0.87708 1.00905 1.05913 0.89689 0.88384 0.91173 0.78895 0.77685 0.75431 0.84208 0.90994 0.91279 0.87532 0.92250 0.89801 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.02 71.24 0.71 -0.42 16 2 C -0.05 -0.96 5.88 -19.84 -0.12 -1.08 16 3 C -0.14 -1.73 9.67 22.06 0.21 -1.52 16 4 C 0.05 0.81 10.95 83.21 0.91 1.72 16 5 N -0.37 -9.51 2.94 -352.16 -1.04 -10.55 16 6 C -0.07 -1.80 11.66 83.19 0.97 -0.83 16 7 C 0.01 0.33 6.64 41.58 0.28 0.60 16 8 C 0.20 7.26 5.85 85.63 0.50 7.77 16 9 N -1.00 -41.43 3.17 -543.23 -1.72 -43.15 16 10 C 0.08 2.65 10.68 127.77 1.36 4.02 16 11 S 2.69 148.08 4.15 -56.49 -0.23 147.84 16 12 O -1.04 -60.55 14.62 -128.00 -1.87 -62.43 16 13 O -1.01 -60.41 15.81 -128.00 -2.02 -62.44 16 14 C -1.04 -62.48 10.29 67.73 0.70 -61.78 16 15 H 0.11 6.54 8.06 -2.91 -0.02 6.51 16 16 C 0.11 6.78 5.47 84.65 0.46 7.25 16 17 N -0.85 -51.61 13.96 21.45 0.30 -51.31 16 18 Si 0.82 44.31 26.54 68.60 1.82 46.14 16 19 H -0.24 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.21 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.24 -13.34 5.60 99.48 0.56 -12.78 16 22 N -0.53 -22.85 11.32 -182.41 -2.06 -24.91 16 23 C 0.20 6.74 7.81 134.11 1.05 7.79 16 24 C -0.13 -3.53 9.75 22.42 0.22 -3.31 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 0.50 8.10 -2.39 -0.02 0.48 16 27 H 0.07 0.78 8.08 -2.38 -0.02 0.76 16 28 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 29 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 30 H 0.23 3.24 8.06 -2.91 -0.02 3.21 16 31 H 0.14 3.40 8.11 -2.39 -0.02 3.38 16 32 H 0.07 2.97 7.61 -2.39 -0.02 2.95 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.11 2.37 8.07 -2.39 -0.02 2.35 16 35 H 0.06 2.11 7.02 -2.38 -0.02 2.09 16 36 H 0.29 15.86 8.31 -92.71 -0.77 15.09 16 37 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -91.15 328.85 1.36 -89.79 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.93 Total: 10.81 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 7.26 Total: -39.80 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -4.52 Total: -129.92 kcal Atomic # 8 Polarization: -120.97 SS G_CDS: -3.89 Total: -124.86 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.82 Total: 46.14 kcal Atomic # 16 Polarization: 148.08 SS G_CDS: -0.23 Total: 147.84 kcal Total: -91.15 1.36 -89.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.390 kcal (2) G-P(sol) polarization free energy of solvation -91.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds