Wall clock time and date at job start Fri Apr 10 2020 18:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00140 * 2 1 4 4 H 1.48495 * 109.47241 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46814 * 300.00386 * 3 2 1 6 6 H 1.48499 * 109.47065 * 59.99936 * 3 2 1 7 7 C 1.37880 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99905 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99787 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40671 * 65.49157 * 9 7 2 11 11 O 1.42101 * 106.40071 * 292.56992 * 9 7 2 12 12 N 1.65606 * 107.21862 * 179.03485 * 9 7 2 13 13 C 1.39817 * 119.99533 * 298.44912 * 12 9 7 14 14 C 1.38912 * 120.00553 * 313.54409 * 13 12 9 15 15 C 1.38034 * 119.98927 * 179.74528 * 14 13 12 16 16 C 1.38857 * 120.01172 * 0.50779 * 15 14 13 17 17 N 1.40263 * 119.99793 * 179.74566 * 16 15 14 18 18 C 1.35196 * 126.00147 * 0.02562 * 17 16 15 19 19 C 1.35307 * 107.80073 * 180.02562 * 18 17 16 20 20 C 1.40325 * 107.88194 * 359.97438 * 19 18 17 21 21 O 1.35980 * 125.93618 * 179.97438 * 20 19 18 22 22 N 1.31169 * 108.12365 * 359.71852 * 20 19 18 23 23 C 1.38857 * 120.00750 * 359.76614 * 16 15 14 24 24 C 1.38034 * 120.00958 * 359.97438 * 23 16 15 25 25 H 0.97004 * 119.99665 * 359.97438 * 1 2 3 26 26 H 0.96989 * 120.00129 * 118.71767 * 12 9 7 27 27 H 1.08001 * 120.00196 * 359.97186 * 14 13 12 28 28 H 1.08006 * 119.99564 * 180.27345 * 15 14 13 29 29 H 1.08002 * 126.10012 * 0.02668 * 18 17 16 30 30 H 1.08000 * 126.06114 * 180.02562 * 19 18 17 31 31 H 0.96696 * 114.00244 * 90.00107 * 21 20 19 32 32 H 1.08005 * 119.99743 * 180.02562 * 23 16 15 33 33 H 1.07997 * 120.00746 * 179.97438 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0019 10 8 0.4336 -2.7840 -1.2425 11 8 0.4693 -2.8066 1.2566 12 7 2.2481 -3.9353 -0.0289 13 6 3.1310 -4.0469 -1.1073 14 6 2.6534 -3.9551 -2.4085 15 6 3.5261 -4.0600 -3.4728 16 6 4.8797 -4.2677 -3.2432 17 7 5.7654 -4.3796 -4.3250 18 6 5.4350 -4.3039 -5.6337 19 6 6.5682 -4.4607 -6.3562 20 6 7.6311 -4.6383 -5.4575 21 8 8.9354 -4.8289 -5.7916 22 7 7.1487 -4.5829 -4.2390 23 6 5.3565 -4.3652 -1.9427 24 6 4.4851 -4.2550 -0.8778 25 1 -0.4850 0.8401 0.0004 26 1 2.2916 -4.5721 0.7014 27 1 1.5999 -3.7980 -2.5873 28 1 3.1555 -3.9842 -4.4844 29 1 4.4433 -4.1463 -6.0316 30 1 6.6418 -4.4502 -7.4337 31 1 9.4445 -4.0107 -5.8717 32 1 6.4094 -4.5264 -1.7642 33 1 4.8559 -4.3312 0.1336 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988836.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:51 Heat of formation + Delta-G solvation = -44.208002 kcal Electronic energy + Delta-G solvation = -22407.675348 eV Core-core repulsion = 18754.155052 eV Total energy + Delta-G solvation = -3653.520295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 309.062 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.61455 -40.42604 -38.30638 -37.49195 -36.26409 -36.13533 -35.19083 -32.80568 -32.27345 -31.12251 -28.53247 -28.28233 -24.35515 -24.12534 -22.03112 -21.83360 -21.10321 -19.62811 -19.31749 -18.82940 -18.38814 -18.25085 -17.01760 -16.75577 -16.22821 -15.86025 -15.76926 -15.65157 -15.19900 -15.02494 -14.56551 -14.44357 -14.05884 -14.00672 -13.67946 -13.35690 -13.06654 -13.04892 -12.69101 -12.59476 -12.54792 -12.32030 -12.19938 -11.55587 -11.30302 -11.28025 -11.03297 -10.62867 -10.12073 -10.07511 -8.87767 -8.71808 -7.51364 -0.29634 0.22198 0.29004 1.02921 1.16686 1.31490 1.33635 1.50350 1.58551 2.18060 2.55314 2.67579 2.78529 3.00715 3.52553 3.59034 3.83675 3.93936 4.10591 4.15100 4.32162 4.47231 4.58233 4.66599 4.69827 4.85576 5.03747 5.13852 5.19274 5.26290 5.40393 5.50384 5.65213 5.87164 6.08967 6.28583 6.49095 6.70801 6.76036 8.17783 Molecular weight = 309.06amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.003825 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.713666 B = 7319.025791 C = 7991.223425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.257 1.257 6 H -0.258 1.258 7 C -1.034 5.034 8 H 0.116 0.884 9 S 2.716 3.284 10 O -1.020 7.020 11 O -1.035 7.035 12 N -1.061 6.061 13 C 0.148 3.852 14 C -0.139 4.139 15 C -0.104 4.104 16 C 0.128 3.872 17 N -0.311 5.311 18 C 0.067 3.933 19 C -0.279 4.279 20 C 0.254 3.746 21 O -0.468 6.468 22 N -0.339 5.339 23 C -0.102 4.102 24 C -0.111 4.111 25 H 0.300 0.700 26 H 0.427 0.573 27 H 0.148 0.852 28 H 0.165 0.835 29 H 0.217 0.783 30 H 0.185 0.815 31 H 0.421 0.579 32 H 0.146 0.854 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.347 -5.870 -10.931 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.137 4.137 3 Si 0.804 3.196 4 H -0.175 1.175 5 H -0.181 1.181 6 H -0.183 1.183 7 C -1.168 5.168 8 H 0.134 0.866 9 S 2.818 3.182 10 O -1.010 7.010 11 O -1.025 7.025 12 N -0.810 5.810 13 C 0.051 3.949 14 C -0.161 4.161 15 C -0.125 4.125 16 C 0.035 3.965 17 N -0.090 5.090 18 C -0.075 4.075 19 C -0.308 4.308 20 C 0.048 3.952 21 O -0.275 6.275 22 N -0.171 5.171 23 C -0.123 4.123 24 C -0.133 4.133 25 H 0.110 0.890 26 H 0.264 0.736 27 H 0.166 0.834 28 H 0.183 0.817 29 H 0.233 0.767 30 H 0.202 0.798 31 H 0.281 0.719 32 H 0.164 0.836 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.330 -6.484 -9.794 17.029 hybrid contribution 0.599 1.242 -0.219 1.396 sum 12.929 -5.242 -10.013 17.173 Atomic orbital electron populations 1.69967 1.08511 1.32381 1.41122 1.25880 0.95329 1.04950 0.87515 0.85167 0.79397 0.75517 0.79563 1.17539 1.18127 1.18255 1.30780 1.06961 1.12123 1.66941 0.86576 1.00272 0.72337 0.73677 0.71945 1.93281 1.73212 1.87793 1.46676 1.93341 1.74891 1.88089 1.46205 1.53337 1.51816 1.46426 1.29447 1.17705 0.89951 1.00509 0.86772 1.21769 1.02199 1.00878 0.91218 1.20793 0.89396 1.01398 1.00938 1.17633 0.88030 1.04884 0.85957 1.45403 1.04203 1.54323 1.05033 1.23312 1.02731 0.99311 0.82127 1.22032 0.90606 1.15690 1.02448 1.20269 0.87065 0.98208 0.89683 1.84836 1.16089 1.37031 1.89511 1.77381 0.89200 1.27816 1.22719 1.20807 1.00956 1.00757 0.89754 1.21227 0.90259 1.01147 1.00675 0.88950 0.73565 0.83403 0.81709 0.76650 0.79801 0.71913 0.83598 0.82429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.95 13.19 21.45 0.28 -50.66 16 2 C 0.08 4.14 5.46 84.66 0.46 4.60 16 3 Si 0.99 40.28 29.54 68.60 2.03 42.30 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -1.03 -54.98 9.61 67.73 0.65 -54.33 16 8 H 0.12 5.69 7.81 -2.91 -0.02 5.67 16 9 S 2.72 138.41 4.92 -56.49 -0.28 138.13 16 10 O -1.02 -55.81 15.16 -128.00 -1.94 -57.75 16 11 O -1.03 -59.26 18.02 -128.00 -2.31 -61.56 16 12 N -1.06 -40.01 5.77 -51.28 -0.30 -40.31 16 13 C 0.15 5.09 6.13 38.19 0.23 5.33 16 14 C -0.14 -4.76 9.22 22.38 0.21 -4.56 16 15 C -0.10 -2.84 9.45 22.37 0.21 -2.63 16 16 C 0.13 3.52 6.69 38.09 0.25 3.77 16 17 N -0.31 -7.98 3.80 -187.70 -0.71 -8.69 16 18 C 0.07 1.28 10.79 83.50 0.90 2.18 16 19 C -0.28 -5.06 10.82 22.10 0.24 -4.82 16 20 C 0.25 5.78 8.47 85.30 0.72 6.50 16 21 O -0.47 -8.50 13.66 -93.33 -1.28 -9.78 16 22 N -0.34 -9.35 11.87 -170.41 -2.02 -11.37 16 23 C -0.10 -2.82 9.65 22.37 0.22 -2.61 16 24 C -0.11 -3.17 9.96 22.38 0.22 -2.95 16 25 H 0.30 15.40 8.31 -92.71 -0.77 14.63 16 26 H 0.43 13.25 8.95 -96.75 -0.87 12.39 16 27 H 0.15 5.74 5.72 -2.91 -0.02 5.72 16 28 H 0.17 3.24 6.73 -2.91 -0.02 3.22 16 29 H 0.22 2.39 7.03 -2.91 -0.02 2.37 16 30 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.42 3.15 9.06 -74.06 -0.67 2.48 16 32 H 0.15 3.75 7.69 -2.91 -0.02 3.73 16 33 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -78.20 310.93 -2.54 -80.74 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -0.34 Total: 28.45 kcal Atomic # 6 Polarization: -53.82 SS G_CDS: 4.32 Total: -49.50 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -2.75 Total: -111.04 kcal Atomic # 8 Polarization: -123.57 SS G_CDS: -5.52 Total: -129.09 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 138.41 SS G_CDS: -0.28 Total: 138.13 kcal Total: -78.20 -2.54 -80.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988836.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.530 kcal (2) G-P(sol) polarization free energy of solvation -78.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds