Wall clock time and date at job start Fri Apr 10 2020 18:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48495 * 109.47071 * 240.00107 * 3 2 1 5 5 H 1.48494 * 109.47019 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47059 * 120.00262 * 3 2 1 7 7 C 1.38814 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99998 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64661 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.82751 * 155.84079 * 10 9 7 12 12 C 1.55155 * 101.58735 * 37.01134 * 11 10 9 13 13 H 1.08998 * 110.71895 * 83.03285 * 12 11 10 14 14 O 1.42899 * 110.72165 * 206.13346 * 12 11 10 15 15 C 1.35296 * 116.99698 * 209.99676 * 14 12 11 16 16 C 1.37743 * 119.18719 * 270.26957 * 15 14 12 17 17 O 1.35306 * 119.18466 * 0.02562 * 16 15 14 18 18 C 1.46786 * 121.63304 * 180.27594 * 16 15 14 19 19 O 1.21463 * 120.05142 * 179.73960 * 18 16 15 20 20 C 1.49158 * 119.89997 * 359.46132 * 18 16 15 21 21 O 1.20822 * 120.76787 * 180.27643 * 20 18 16 22 22 C 1.49509 * 118.46516 * 0.25495 * 20 18 16 23 23 O 1.20821 * 120.76408 * 180.02562 * 22 20 18 24 24 C 1.46789 * 119.18242 * 90.00471 * 15 14 12 25 25 O 1.21460 * 120.04927 * 0.02562 * 24 15 14 26 26 C 1.47023 * 125.65004 * 179.97438 * 9 7 2 27 27 H 0.96996 * 119.99577 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.36196 * 37.00444 * 10 9 7 29 29 H 1.09000 * 110.45911 * 274.72796 * 10 9 7 30 30 H 1.08998 * 111.00425 * 278.93105 * 11 10 9 31 31 H 1.09006 * 111.00325 * 155.09043 * 11 10 9 32 32 H 0.96694 * 114.00227 * 270.26107 * 17 16 15 33 33 H 1.09000 * 109.88332 * 61.67316 * 26 9 7 34 34 H 1.08999 * 109.88110 * 300.50958 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1416 -2.5332 -0.0028 11 6 -0.4012 -3.9316 -0.6165 12 6 0.7784 -4.7525 -0.0316 13 1 0.5439 -5.1018 0.9739 14 8 1.1010 -5.8525 -0.8847 15 6 1.6085 -6.9592 -0.2946 16 6 2.9723 -7.0709 -0.1371 17 8 3.7713 -6.0710 -0.5759 18 6 3.5808 -8.2503 0.4902 19 8 4.7874 -8.3210 0.6102 20 6 2.7147 -9.3591 0.9855 21 8 3.1986 -10.3348 1.5087 22 6 1.2340 -9.2351 0.8200 23 8 0.4937 -10.1082 1.2065 24 6 0.6917 -8.0084 0.1673 25 8 -0.5066 -7.8780 0.0178 26 6 1.9318 -3.7275 -0.0028 27 1 -0.4849 0.8400 0.0004 28 1 -0.5988 -1.7581 -0.6179 29 1 -0.5298 -2.4873 1.0147 30 1 -0.3508 -3.8961 -1.7047 31 1 -1.3589 -4.3324 -0.2843 32 1 4.0592 -6.1715 -1.4935 33 1 2.5277 -3.8655 0.8994 34 1 2.5587 -3.8499 -0.8860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234379026.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:05 Heat of formation + Delta-G solvation = -120.673918 kcal Electronic energy + Delta-G solvation = -25377.522095 eV Core-core repulsion = 21245.640367 eV Total energy + Delta-G solvation = -4131.881729 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.082 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -41.99831 -40.37239 -40.12199 -38.65814 -38.24135 -37.43537 -36.31189 -33.18914 -32.43866 -29.63297 -28.06647 -27.36276 -26.78478 -24.81031 -22.83889 -22.60105 -20.62427 -20.51419 -19.26141 -18.92343 -18.41304 -17.37948 -17.17834 -16.85438 -16.63119 -16.17138 -16.04841 -15.35094 -15.32304 -14.99266 -14.63061 -14.41182 -14.06731 -13.68043 -13.43083 -13.34601 -12.96697 -12.78262 -12.59444 -12.08409 -11.80672 -11.43818 -11.24903 -10.99960 -10.84316 -10.69464 -10.37220 -10.11785 -10.00036 -9.84856 -9.28328 -9.19331 -8.97282 -7.19208 -6.05367 -3.20237 -0.92819 -0.70182 1.22032 1.70817 1.94751 2.60748 2.74820 3.06737 3.23626 3.27865 3.28813 3.72763 4.10711 4.18507 4.25394 4.69692 5.06480 5.07874 5.16609 5.24860 5.44799 5.46139 5.51794 6.02346 6.10463 6.26333 6.37191 6.40682 6.48478 6.57523 6.70977 7.19948 7.22746 7.29745 7.44527 7.52749 7.98304 8.82367 9.40571 10.03742 10.95474 Molecular weight = 309.08amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.003660 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.056930 B = 7649.265016 C = 8541.845261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.017 4.017 3 Si 0.925 3.075 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.197 4.197 8 H 0.087 0.913 9 N -0.587 5.587 10 C 0.145 3.855 11 C -0.137 4.137 12 C 0.080 3.920 13 H 0.070 0.930 14 O -0.295 6.295 15 C 0.039 3.961 16 C 0.043 3.957 17 O -0.450 6.450 18 C 0.336 3.664 19 O -0.369 6.369 20 C 0.301 3.699 21 O -0.326 6.326 22 C 0.301 3.699 23 O -0.326 6.326 24 C 0.332 3.668 25 O -0.359 6.359 26 C 0.121 3.879 27 H 0.262 0.738 28 H 0.115 0.885 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.401 0.599 33 H 0.031 0.969 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.921 -13.474 -1.780 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.214 4.214 3 Si 0.754 3.246 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.324 4.324 8 H 0.105 0.895 9 N -0.312 5.312 10 C 0.021 3.979 11 C -0.175 4.175 12 C 0.025 3.975 13 H 0.088 0.912 14 O -0.211 6.211 15 C -0.012 4.012 16 C -0.009 4.009 17 O -0.261 6.261 18 C 0.208 3.792 19 O -0.240 6.240 20 C 0.166 3.834 21 O -0.192 6.192 22 C 0.166 3.834 23 O -0.191 6.191 24 C 0.204 3.796 25 O -0.229 6.229 26 C -0.005 4.005 27 H 0.072 0.928 28 H 0.132 0.868 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.261 0.739 33 H 0.049 0.951 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.604 -13.921 -0.907 14.191 hybrid contribution 0.570 0.659 -0.186 0.891 sum 3.174 -13.261 -1.093 13.680 Atomic orbital electron populations 1.69782 1.05267 1.26171 1.53080 1.24980 0.95944 0.98496 1.02014 0.85961 0.78489 0.81758 0.78352 1.20619 1.21147 1.20730 1.19389 0.91190 0.82227 1.39617 0.89493 1.44726 1.02519 1.00195 1.83760 1.22094 0.84368 0.92581 0.98902 1.23262 0.95372 0.97100 1.01812 1.23778 0.97226 0.83915 0.92544 0.91159 1.85961 1.81305 1.20625 1.33205 1.22021 0.90196 0.90787 0.98184 1.21540 0.88834 0.89629 1.00876 1.84703 1.66308 1.41224 1.33912 1.22937 0.89791 0.86470 0.79986 1.90705 1.15150 1.76499 1.41636 1.25429 0.91296 0.87940 0.78750 1.90530 1.76625 1.28038 1.23962 1.25436 0.90814 0.88109 0.79049 1.90531 1.60772 1.37370 1.30383 1.22945 0.89974 0.87055 0.79644 1.90714 1.16295 1.76037 1.39850 1.21732 0.93718 0.85153 0.99855 0.92771 0.86758 0.95959 0.90456 0.91160 0.73883 0.95140 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 113. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.61 10.09 55.49 0.56 -23.05 16 2 C -0.02 -0.42 5.49 -17.43 -0.10 -0.52 16 3 Si 0.93 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.20 -4.98 10.27 -15.06 -0.15 -5.14 16 8 H 0.09 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.59 -13.74 3.39 -170.07 -0.58 -14.31 16 10 C 0.15 3.20 5.89 -2.53 -0.01 3.19 16 11 C -0.14 -2.42 6.81 -24.58 -0.17 -2.59 16 12 C 0.08 1.33 3.50 -24.90 -0.09 1.24 16 13 H 0.07 1.10 7.92 -51.93 -0.41 0.69 16 14 O -0.30 -4.30 9.23 -44.25 -0.41 -4.71 16 15 C 0.04 0.46 5.78 -36.31 -0.21 0.25 16 16 C 0.04 0.45 6.90 -36.31 -0.25 0.20 16 17 O -0.45 -4.87 11.59 -44.28 -0.51 -5.39 16 18 C 0.34 3.44 7.19 -31.59 -0.23 3.21 16 19 O -0.37 -4.74 17.53 -20.90 -0.37 -5.10 16 20 C 0.30 3.02 7.30 -30.34 -0.22 2.79 16 21 O -0.33 -4.01 17.59 -20.51 -0.36 -4.37 16 22 C 0.30 3.12 7.30 -30.34 -0.22 2.90 16 23 O -0.33 -4.11 17.59 -20.51 -0.36 -4.47 16 24 C 0.33 3.80 7.19 -31.59 -0.23 3.58 16 25 O -0.36 -5.16 17.53 -20.90 -0.37 -5.53 16 26 C 0.12 2.32 6.24 -3.06 -0.02 2.30 16 27 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.11 2.81 5.87 -51.93 -0.31 2.51 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.40 2.54 9.06 45.56 0.41 2.95 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.92 7.50 -51.93 -0.39 0.53 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -29.72 314.35 -6.51 -36.23 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -1.93 Total: -0.49 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -1.90 Total: 11.42 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.02 Total: -37.37 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -2.38 Total: -29.56 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.72 -6.51 -36.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234379026.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.444 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds