Wall clock time and date at job start Fri Apr 10 2020 18:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48495 * 109.47071 * 240.00107 * 3 2 1 5 5 H 1.48494 * 109.47019 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47059 * 120.00262 * 3 2 1 7 7 C 1.38814 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99998 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64661 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.82751 * 155.84079 * 10 9 7 12 12 C 1.55155 * 101.58735 * 37.01134 * 11 10 9 13 13 H 1.08998 * 110.71895 * 83.03285 * 12 11 10 14 14 O 1.42899 * 110.72165 * 206.13346 * 12 11 10 15 15 C 1.35296 * 116.99698 * 209.99676 * 14 12 11 16 16 C 1.37743 * 119.18719 * 270.26957 * 15 14 12 17 17 O 1.35306 * 119.18466 * 0.02562 * 16 15 14 18 18 C 1.46786 * 121.63304 * 180.27594 * 16 15 14 19 19 O 1.21463 * 120.05142 * 179.73960 * 18 16 15 20 20 C 1.49158 * 119.89997 * 359.46132 * 18 16 15 21 21 O 1.20822 * 120.76787 * 180.27643 * 20 18 16 22 22 C 1.49509 * 118.46516 * 0.25495 * 20 18 16 23 23 O 1.20821 * 120.76408 * 180.02562 * 22 20 18 24 24 C 1.46789 * 119.18242 * 90.00471 * 15 14 12 25 25 O 1.21460 * 120.04927 * 0.02562 * 24 15 14 26 26 C 1.47023 * 125.65004 * 179.97438 * 9 7 2 27 27 H 0.96996 * 119.99577 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.36196 * 37.00444 * 10 9 7 29 29 H 1.09000 * 110.45911 * 274.72796 * 10 9 7 30 30 H 1.08998 * 111.00425 * 278.93105 * 11 10 9 31 31 H 1.09006 * 111.00325 * 155.09043 * 11 10 9 32 32 H 0.96694 * 114.00227 * 270.26107 * 17 16 15 33 33 H 1.09000 * 109.88332 * 61.67316 * 26 9 7 34 34 H 1.08999 * 109.88110 * 300.50958 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1416 -2.5332 -0.0028 11 6 -0.4012 -3.9316 -0.6165 12 6 0.7784 -4.7525 -0.0316 13 1 0.5439 -5.1018 0.9739 14 8 1.1010 -5.8525 -0.8847 15 6 1.6085 -6.9592 -0.2946 16 6 2.9723 -7.0709 -0.1371 17 8 3.7713 -6.0710 -0.5759 18 6 3.5808 -8.2503 0.4902 19 8 4.7874 -8.3210 0.6102 20 6 2.7147 -9.3591 0.9855 21 8 3.1986 -10.3348 1.5087 22 6 1.2340 -9.2351 0.8200 23 8 0.4937 -10.1082 1.2065 24 6 0.6917 -8.0084 0.1673 25 8 -0.5066 -7.8780 0.0178 26 6 1.9318 -3.7275 -0.0028 27 1 -0.4849 0.8400 0.0004 28 1 -0.5988 -1.7581 -0.6179 29 1 -0.5298 -2.4873 1.0147 30 1 -0.3508 -3.8961 -1.7047 31 1 -1.3589 -4.3324 -0.2843 32 1 4.0592 -6.1715 -1.4935 33 1 2.5277 -3.8655 0.8994 34 1 2.5587 -3.8499 -0.8860 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234379026.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:01 Heat of formation + Delta-G solvation = -152.316922 kcal Electronic energy + Delta-G solvation = -25378.894239 eV Core-core repulsion = 21245.640367 eV Total energy + Delta-G solvation = -4133.253872 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.082 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -41.53070 -41.28695 -39.40519 -39.24936 -37.84526 -37.33055 -36.68732 -36.06033 -33.54431 -31.82876 -30.17531 -28.72947 -27.03072 -25.82087 -24.02888 -22.85931 -22.06852 -21.66510 -20.94464 -19.17069 -18.59540 -18.52788 -18.22966 -17.42271 -17.00227 -16.80419 -16.47737 -16.31084 -16.13912 -15.53367 -15.17305 -15.13345 -14.81582 -14.76210 -14.61382 -14.37618 -14.09378 -14.04216 -13.58866 -13.35568 -13.25466 -13.13707 -13.06985 -12.93234 -12.22336 -11.92257 -11.84279 -11.79758 -11.31219 -11.22656 -10.63047 -10.32091 -9.61897 -8.69880 -8.49549 -5.53652 -1.59162 -0.72654 0.45833 0.79945 1.10580 1.33851 1.67326 1.94916 2.09421 2.27235 2.60208 2.75559 2.93067 3.13638 3.19299 3.53403 3.73511 3.84159 3.95576 3.98016 4.03827 4.15016 4.39455 4.50433 4.60346 4.69239 4.81815 4.99070 5.03164 5.06828 5.11370 5.52112 5.94544 6.05637 6.06390 6.41230 6.76302 7.22932 7.69266 8.11344 8.43622 Molecular weight = 309.08amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.003660 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.056930 B = 7649.265016 C = 8541.845261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.079 4.079 3 Si 1.053 2.947 4 H -0.229 1.229 5 H -0.252 1.252 6 H -0.231 1.231 7 C 0.345 3.655 8 H 0.267 0.733 9 N -0.396 5.396 10 C 0.073 3.927 11 C -0.137 4.137 12 C 0.043 3.957 13 H 0.041 0.959 14 O -0.283 6.283 15 C -0.189 4.189 16 C -0.154 4.154 17 O -0.466 6.466 18 C 0.146 3.854 19 O -0.672 6.672 20 C 0.272 3.728 21 O -0.471 6.471 22 C 0.287 3.713 23 O -0.457 6.457 24 C 0.181 3.819 25 O -0.643 6.643 26 C 0.050 3.950 27 H 0.378 0.622 28 H 0.169 0.831 29 H 0.134 0.866 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.333 0.667 33 H 0.122 0.878 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 48.923 -4.203 49.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.313 4.313 3 Si 0.863 3.137 4 H -0.151 1.151 5 H -0.175 1.175 6 H -0.153 1.153 7 C 0.165 3.835 8 H 0.282 0.718 9 N -0.063 5.063 10 C -0.046 4.046 11 C -0.175 4.175 12 C -0.015 4.015 13 H 0.060 0.940 14 O -0.198 6.198 15 C -0.238 4.238 16 C -0.204 4.204 17 O -0.272 6.272 18 C 0.065 3.935 19 O -0.587 6.587 20 C 0.153 3.847 21 O -0.352 6.352 22 C 0.165 3.835 23 O -0.335 6.335 24 C 0.097 3.903 25 O -0.554 6.554 26 C -0.071 4.071 27 H 0.199 0.801 28 H 0.186 0.814 29 H 0.152 0.848 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.185 0.815 33 H 0.140 0.860 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.704 47.896 -3.342 48.242 hybrid contribution -0.219 -1.137 0.011 1.158 sum -4.923 46.758 -3.330 47.134 Atomic orbital electron populations 1.69902 1.09419 1.41194 0.97349 1.28942 0.97957 1.06412 0.97954 0.83974 0.78497 0.67694 0.83494 1.15142 1.17542 1.15336 1.26613 1.02903 0.80707 0.73286 0.71761 1.49965 1.12887 1.08218 1.35252 1.24112 0.75672 0.98413 1.06434 1.23107 0.98627 0.93196 1.02603 1.23610 0.93275 0.88998 0.95575 0.94044 1.86000 1.81992 1.20648 1.31195 1.19167 0.88114 0.90292 1.26212 1.19103 0.86651 0.94300 1.20383 1.84487 1.68540 1.43554 1.30582 1.20919 0.88352 0.89057 0.95145 1.90177 1.16491 1.83186 1.68858 1.26862 0.92258 0.88965 0.76571 1.90066 1.78712 1.32944 1.33470 1.26991 0.90803 0.89083 0.76619 1.90078 1.63158 1.41517 1.38712 1.20927 0.89441 0.88421 0.91555 1.90182 1.17900 1.81596 1.65749 1.23811 0.97970 0.77434 1.07865 0.80127 0.81422 0.84832 0.88864 0.89244 0.81541 0.86034 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 134. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 5.16 10.09 21.65 0.22 5.38 16 2 C -0.08 1.00 5.49 84.86 0.47 1.47 16 3 Si 1.05 -14.45 29.55 68.60 2.03 -12.42 16 4 H -0.23 2.75 7.11 99.48 0.71 3.46 16 5 H -0.25 2.66 7.11 99.48 0.71 3.36 16 6 H -0.23 2.70 7.11 99.48 0.71 3.41 16 7 C 0.35 -3.82 10.27 84.03 0.86 -2.96 16 8 H 0.27 -5.64 7.83 -2.91 -0.02 -5.66 16 9 N -0.40 -0.52 3.39 -691.97 -2.35 -2.87 16 10 C 0.07 0.32 5.89 86.85 0.51 0.83 16 11 C -0.14 -2.72 6.81 31.98 0.22 -2.51 16 12 C 0.04 1.42 3.50 31.78 0.11 1.53 16 13 H 0.04 1.65 7.92 -2.39 -0.02 1.63 16 14 O -0.28 -14.12 9.23 -60.31 -0.56 -14.67 16 15 C -0.19 -11.72 5.78 24.39 0.14 -11.58 16 16 C -0.15 -9.81 6.90 24.39 0.17 -9.64 16 17 O -0.47 -24.31 11.59 -60.42 -0.70 -25.01 16 18 C 0.15 10.70 7.19 27.45 0.20 10.89 16 19 O -0.67 -52.75 17.53 21.55 0.38 -52.37 16 20 C 0.27 20.14 7.30 28.25 0.21 20.34 16 21 O -0.47 -35.89 17.59 23.66 0.42 -35.48 16 22 C 0.29 20.85 7.30 28.25 0.21 21.06 16 23 O -0.46 -33.87 17.59 23.66 0.42 -33.46 16 24 C 0.18 12.71 7.19 27.45 0.20 12.91 16 25 O -0.64 -47.11 17.53 21.56 0.38 -46.74 16 26 C 0.05 0.84 6.24 86.73 0.54 1.38 16 27 H 0.38 -4.78 8.31 -92.71 -0.77 -5.55 16 28 H 0.17 -0.27 5.87 -2.39 -0.01 -0.28 16 29 H 0.13 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.33 15.36 9.06 -74.06 -0.67 14.69 16 33 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.13 2.38 7.50 -2.39 -0.02 2.36 16 Total: -1.00 -154.69 314.35 4.58 -150.11 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.53 Total: 23.79 kcal Atomic # 6 Polarization: 39.90 SS G_CDS: 3.83 Total: 43.73 kcal Atomic # 7 Polarization: 4.64 SS G_CDS: -2.13 Total: 2.51 kcal Atomic # 8 Polarization: -208.05 SS G_CDS: 0.33 Total: -207.72 kcal Atomic # 14 Polarization: -14.45 SS G_CDS: 2.03 Total: -12.42 kcal Total: -154.69 4.58 -150.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234379026.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.210 kcal (2) G-P(sol) polarization free energy of solvation -154.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -150.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds