Wall clock time and date at job start Fri Apr 10 2020 17:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34753 * 116.99913 * 2 1 4 4 O 1.21529 * 120.00158 * 359.97438 * 3 2 1 5 5 C 1.47285 * 120.00115 * 180.02562 * 3 2 1 6 6 C 1.41137 * 126.40782 * 89.97394 * 5 3 2 7 7 C 1.50695 * 126.58926 * 0.02562 * 6 5 3 8 8 C 1.37818 * 106.81586 * 180.02562 * 6 5 3 9 9 C 1.41556 * 125.97776 * 179.97438 * 8 6 5 10 10 C 1.50689 * 120.00385 * 179.97438 * 9 8 6 11 11 O 1.21424 * 119.99592 * 359.97438 * 9 8 6 12 12 N 1.38006 * 108.04649 * 359.76442 * 8 6 5 13 13 H 0.96997 * 125.36982 * 180.23916 * 12 8 6 14 14 C 1.34103 * 109.26492 * 0.39340 * 12 8 6 15 15 C 1.50706 * 125.65820 * 179.86745 * 14 12 8 16 16 C 1.50698 * 109.47294 * 264.69799 * 15 14 12 17 17 O 1.21212 * 119.99633 * 359.97438 * 16 15 14 18 18 O 1.34306 * 119.99898 * 180.02562 * 16 15 14 19 19 C 1.34923 * 116.99932 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99973 * 359.97438 * 19 18 16 21 21 C 1.38756 * 119.99899 * 179.97438 * 19 18 16 22 22 N 1.31437 * 119.99842 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99642 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47388 * 90.00045 * 23 21 19 25 25 H 1.48505 * 109.46995 * 209.99909 * 23 21 19 26 26 H 1.48502 * 109.47432 * 329.99555 * 23 21 19 27 27 H 1.08998 * 109.47324 * 60.00103 * 1 2 3 28 28 H 1.09009 * 109.47192 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47300 * 299.99938 * 1 2 3 30 30 H 1.08995 * 109.47368 * 90.00084 * 7 6 5 31 31 H 1.08999 * 109.47005 * 210.00038 * 7 6 5 32 32 H 1.08996 * 109.47312 * 329.99694 * 7 6 5 33 33 H 1.09006 * 109.47305 * 0.02562 * 10 9 8 34 34 H 1.09003 * 109.47308 * 119.99732 * 10 9 8 35 35 H 1.09001 * 109.47547 * 239.99961 * 10 9 8 36 36 H 1.09001 * 109.46953 * 24.69241 * 15 14 12 37 37 H 1.09000 * 109.47318 * 144.68839 * 15 14 12 38 38 H 0.97003 * 119.99411 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2199 -0.0005 5 6 3.5346 1.2778 -0.0006 6 6 4.3707 1.3214 -1.1368 7 6 3.9301 1.2985 -2.5777 8 6 5.6675 1.3889 -0.6752 9 6 6.8332 1.4491 -1.4760 10 6 8.1910 1.5205 -0.8262 11 8 6.7391 1.4433 -2.6865 12 7 5.6306 1.3923 0.7044 13 1 6.4051 1.4372 1.2867 14 6 4.3554 1.3206 1.1131 15 6 3.8924 1.2968 2.5471 16 6 3.6937 -0.1307 2.9873 17 8 3.9064 -1.0387 2.2131 18 8 3.2799 -0.3966 4.2370 19 6 3.1214 -1.6953 4.5665 20 1 3.3251 -2.4660 3.8378 21 6 2.6968 -2.0408 5.8415 22 7 2.4495 -1.1029 6.7284 23 14 2.4768 -3.8389 6.2973 24 1 3.7502 -4.3697 6.8469 25 1 1.4066 -3.9631 7.3194 26 1 2.0985 -4.6135 5.0881 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.7704 2.3192 -2.9251 31 1 4.7004 0.8241 -3.1857 32 1 3.0008 0.7355 -2.6646 33 1 8.0758 1.5148 0.2578 34 1 8.7860 0.6601 -1.1324 35 1 8.6933 2.4376 -1.1338 36 1 4.6434 1.7707 3.1792 37 1 2.9504 1.8384 2.6338 38 1 2.1530 -1.3445 7.6199 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052475028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:20 Heat of formation + Delta-G solvation = -183.073840 kcal Electronic energy + Delta-G solvation = -25700.183350 eV Core-core repulsion = 21701.428853 eV Total energy + Delta-G solvation = -3998.754498 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.06099 -41.18161 -40.96256 -39.84020 -37.49816 -37.30038 -34.38156 -34.27652 -33.58165 -31.20261 -30.11465 -28.48554 -27.97515 -27.16272 -24.55007 -23.41895 -21.62200 -20.99569 -20.40357 -19.87430 -18.76384 -18.52535 -18.41669 -17.53245 -17.21185 -16.79578 -16.73701 -16.32858 -16.27471 -15.96047 -15.66118 -15.00349 -14.68337 -14.56725 -14.24814 -14.17753 -13.98892 -13.76255 -13.56365 -13.47108 -13.26906 -13.08256 -13.02663 -12.97374 -12.77853 -12.33256 -12.16960 -11.99651 -11.88338 -11.84873 -11.10970 -10.84042 -10.68885 -10.10058 -9.44032 -8.53306 -6.32428 -0.16022 0.74626 0.90710 1.29423 1.36342 1.52265 1.61716 1.69065 1.84357 2.03078 2.17107 2.78991 2.98218 3.17542 3.29183 3.68796 3.74459 3.99244 4.09265 4.20214 4.23833 4.27256 4.33261 4.34937 4.58419 4.61529 4.62746 4.68664 4.70665 4.85981 4.95303 5.11698 5.18616 5.23437 5.30385 5.50857 5.83355 6.18877 6.49940 6.57709 6.65205 6.92437 7.73712 8.66812 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.004286 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.884356 B = 6531.961858 C = 7675.390665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.360 6.360 3 C 0.548 3.452 4 O -0.522 6.522 5 C -0.228 4.228 6 C -0.038 4.038 7 C -0.092 4.092 8 C -0.091 4.091 9 C 0.423 3.577 10 C -0.193 4.193 11 O -0.488 6.488 12 N -0.484 5.484 13 H 0.442 0.558 14 C 0.149 3.851 15 C -0.046 4.046 16 C 0.399 3.601 17 O -0.561 6.561 18 O -0.240 6.240 19 C -0.415 4.415 20 H 0.082 0.918 21 C -0.001 4.001 22 N -0.901 5.901 23 Si 1.012 2.988 24 H -0.259 1.259 25 H -0.262 1.262 26 H -0.265 1.265 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.155 0.845 37 H 0.126 0.874 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 5.873 -11.161 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.276 6.276 3 C 0.392 3.608 4 O -0.412 6.412 5 C -0.235 4.235 6 C -0.045 4.045 7 C -0.149 4.149 8 C -0.200 4.200 9 C 0.305 3.695 10 C -0.250 4.250 11 O -0.367 6.367 12 N -0.081 5.081 13 H 0.286 0.714 14 C 0.023 3.977 15 C -0.084 4.084 16 C 0.245 3.755 17 O -0.458 6.458 18 O -0.149 6.149 19 C -0.491 4.491 20 H 0.100 0.900 21 C -0.201 4.201 22 N -0.539 5.539 23 Si 0.832 3.168 24 H -0.184 1.184 25 H -0.187 1.187 26 H -0.189 1.189 27 H 0.097 0.903 28 H 0.142 0.858 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.173 0.827 37 H 0.144 0.856 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.492 5.958 -11.712 14.656 hybrid contribution -0.408 -0.696 0.773 1.117 sum 6.084 5.262 -10.939 13.578 Atomic orbital electron populations 1.23610 0.74589 1.05649 1.02936 1.86761 1.25201 1.32578 1.83055 1.20507 0.88369 0.81216 0.70703 1.90794 1.67307 1.36616 1.46473 1.18445 0.89586 1.20867 0.94630 1.20348 0.90714 0.97995 0.95420 1.20462 1.01849 1.03212 0.89342 1.19842 0.96489 1.20757 0.82867 1.20497 0.90157 0.70959 0.87837 1.22235 0.93661 1.06674 1.02414 1.90577 1.89487 1.39968 1.16686 1.41414 1.07034 1.53042 1.06596 0.71378 1.19756 0.84241 1.00219 0.93524 1.19859 1.06954 0.91554 0.90075 1.23716 0.77979 0.92370 0.81459 1.90613 1.51776 1.48934 1.54433 1.83874 1.71519 1.30375 1.29099 1.21365 1.48739 0.80234 0.98723 0.90003 1.26433 0.94740 1.05138 0.93808 1.70063 1.42944 1.35255 1.05596 0.84692 0.79196 0.74361 0.78598 1.18408 1.18656 1.18940 0.90309 0.85769 0.92201 0.89719 0.89370 0.91874 0.89267 0.87355 0.86595 0.82729 0.85558 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.57 113.37 1.20 1.90 16 2 O -0.36 -13.42 10.58 -56.63 -0.60 -14.02 16 3 C 0.55 20.43 7.21 70.20 0.51 20.94 16 4 O -0.52 -20.29 16.90 19.74 0.33 -19.96 16 5 C -0.23 -7.89 6.00 -20.15 -0.12 -8.01 16 6 C -0.04 -1.16 6.25 -19.25 -0.12 -1.28 16 7 C -0.09 -2.49 9.61 71.23 0.68 -1.81 16 8 C -0.09 -2.35 6.76 38.89 0.26 -2.09 16 9 C 0.42 9.34 7.06 26.50 0.19 9.53 16 10 C -0.19 -2.34 10.30 71.23 0.73 -1.61 16 11 O -0.49 -13.51 15.36 -3.48 -0.05 -13.57 16 12 N -0.48 -11.42 5.84 -174.81 -1.02 -12.44 16 13 H 0.44 6.76 7.57 -92.71 -0.70 6.06 16 14 C 0.15 4.61 5.68 42.26 0.24 4.85 16 15 C -0.05 -1.51 6.12 29.10 0.18 -1.33 16 16 C 0.40 18.49 7.90 71.24 0.56 19.05 16 17 O -0.56 -28.92 15.27 20.77 0.32 -28.60 16 18 O -0.24 -13.31 9.75 14.88 0.15 -13.16 16 19 C -0.41 -24.11 9.65 67.94 0.66 -23.45 16 20 H 0.08 4.86 6.86 -2.91 -0.02 4.84 16 21 C 0.00 -0.04 5.49 84.88 0.47 0.43 16 22 N -0.90 -51.40 13.67 21.62 0.30 -51.10 16 23 Si 1.01 42.05 29.55 68.60 2.03 44.08 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.36 6.41 -2.39 -0.02 2.34 16 32 H 0.06 1.69 8.05 -2.39 -0.02 1.67 16 33 H 0.09 0.73 6.49 -2.38 -0.02 0.71 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.16 3.64 8.14 -2.39 -0.02 3.62 16 37 H 0.13 4.00 8.04 -2.39 -0.02 3.98 16 38 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -80.58 345.53 7.30 -73.27 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.42 Total: 18.38 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 5.43 Total: 17.12 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -0.73 Total: -63.54 kcal Atomic # 8 Polarization: -89.46 SS G_CDS: 0.14 Total: -89.31 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -80.58 7.30 -73.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052475028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.801 kcal (2) G-P(sol) polarization free energy of solvation -80.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds