Wall clock time and date at job start Fri Apr 10 2020 17:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47535 * 2 1 4 4 C 1.36938 * 120.00194 * 275.96500 * 3 2 1 5 5 H 1.07995 * 120.00500 * 146.58937 * 4 3 2 6 6 C 1.38815 * 119.99475 * 326.58893 * 4 3 2 7 7 N 1.31625 * 120.00326 * 336.11404 * 6 4 3 8 8 Si 1.86802 * 120.00110 * 156.11664 * 6 4 3 9 9 H 1.48499 * 109.46774 * 59.99730 * 8 6 4 10 10 H 1.48495 * 109.47302 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47039 * 300.00027 * 8 6 4 12 12 S 1.65603 * 119.99965 * 95.95886 * 3 2 1 13 13 O 1.42102 * 106.39755 * 156.46374 * 12 3 2 14 14 O 1.42096 * 106.40418 * 23.54243 * 12 3 2 15 15 C 1.76197 * 107.21905 * 269.99863 * 12 3 2 16 16 C 1.38271 * 120.11081 * 90.00074 * 15 12 3 17 17 C 1.37939 * 119.76959 * 180.14839 * 16 15 12 18 18 C 1.38906 * 120.54487 * 359.97438 * 17 16 15 19 19 C 1.37665 * 119.68568 * 359.74443 * 18 17 16 20 20 C 1.37931 * 120.11907 * 270.02603 * 15 12 3 21 21 C 1.50626 * 122.56047 * 180.74379 * 19 18 17 22 22 C 1.52735 * 110.59278 * 341.99962 * 21 19 18 23 23 C 1.53320 * 108.39454 * 51.13073 * 22 21 19 24 24 C 1.50635 * 117.76132 * 179.42567 * 18 17 16 25 25 H 1.09010 * 109.46931 * 300.00365 * 1 2 3 26 26 H 1.09003 * 109.47031 * 59.99810 * 1 2 3 27 27 H 1.08989 * 109.47672 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46857 * 239.99459 * 2 1 3 29 29 H 1.09003 * 109.47031 * 120.00190 * 2 1 3 30 30 H 0.96996 * 120.00188 * 180.02562 * 7 6 4 31 31 H 1.07991 * 120.11250 * 0.17320 * 16 15 12 32 32 H 1.08004 * 119.72376 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.72625 * 0.02562 * 20 15 12 34 34 H 1.09003 * 109.25531 * 102.28709 * 21 19 18 35 35 H 1.09004 * 109.25250 * 221.71815 * 21 19 18 36 36 H 1.08999 * 109.67831 * 170.85705 * 22 21 19 37 37 H 1.08997 * 109.67475 * 291.40696 * 22 21 19 38 38 H 1.08999 * 109.68149 * 49.91232 * 23 22 21 39 39 H 1.09005 * 109.67336 * 170.42057 * 23 22 21 40 40 H 1.08994 * 109.24933 * 282.58305 * 24 18 17 41 41 H 1.08996 * 109.24962 * 42.01548 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.1306 2.0678 -1.1795 5 1 1.9555 3.1332 -1.2029 6 6 2.4692 1.3942 -2.3451 7 7 3.1251 0.2549 -2.2800 8 14 1.9941 2.1048 -4.0061 9 1 2.6194 3.4418 -4.1696 10 1 2.4676 1.2010 -5.0849 11 1 0.5170 2.2364 -4.0840 12 16 2.4349 2.1121 1.4264 13 8 3.3459 3.1508 1.0939 14 8 2.7467 1.0668 2.3370 15 6 0.9879 2.9005 2.0504 16 6 0.1314 2.2135 2.8909 17 6 -1.0010 2.8365 3.3728 18 6 -1.2883 4.1493 3.0212 19 6 -0.4325 4.8351 2.1891 20 6 0.7054 4.2047 1.7018 21 6 -0.6722 6.2647 1.7797 22 6 -2.1286 6.6560 2.0221 23 6 -2.4953 6.2862 3.4642 24 6 -2.5482 4.7637 3.5729 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 3.3620 -0.2155 -3.0945 31 1 0.3485 1.1930 3.1693 32 1 -1.6693 2.2994 4.0296 33 1 1.3744 4.7403 1.0446 34 1 -0.0227 6.9189 2.3614 35 1 -0.4410 6.3790 0.7206 36 1 -2.2494 7.7294 1.8764 37 1 -2.7738 6.1159 1.3293 38 1 -1.7405 6.6770 4.1466 39 1 -3.4693 6.7067 3.7145 40 1 -3.4049 4.3928 3.0105 41 1 -2.6568 4.4817 4.6201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057575537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:26 Heat of formation + Delta-G solvation = -60.715964 kcal Electronic energy + Delta-G solvation = -24326.921185 eV Core-core repulsion = 20912.058488 eV Total energy + Delta-G solvation = -3414.862696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.89886 -36.17846 -36.00289 -35.82060 -34.64659 -32.55077 -31.63817 -30.28594 -29.19839 -28.79636 -24.57848 -23.92253 -22.84354 -22.16208 -21.58709 -19.70331 -18.37649 -17.34237 -16.62568 -16.23884 -15.82207 -15.54135 -14.68729 -14.52913 -14.37203 -14.09408 -13.94348 -13.40924 -13.37553 -13.09571 -12.78228 -12.60619 -12.33220 -12.16688 -11.97687 -11.60409 -11.50842 -11.23031 -11.03431 -10.98714 -10.94580 -10.87450 -10.80399 -10.79392 -10.48626 -10.41880 -10.14107 -9.95954 -9.74746 -9.05298 -8.73850 -8.49210 -7.68698 -6.22830 -3.91244 1.12088 1.55101 1.59223 3.23721 3.28609 3.31366 3.65990 4.19139 4.49601 4.57091 4.59257 4.75175 4.79858 4.98473 5.00256 5.09296 5.11830 5.35632 5.41563 5.43616 5.55511 5.56622 5.72337 5.73407 5.83734 5.89694 5.97556 6.10710 6.14416 6.18124 6.24674 6.29908 6.39968 6.46264 6.53439 6.63396 6.67742 6.96025 7.13765 7.33179 7.44855 7.82705 8.45973 9.04214 9.41557 10.79015 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.016009 B = 0.005311 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.607950 B = 5270.699038 C = 5955.458508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.840 5.840 4 C -0.287 4.287 5 H 0.090 0.910 6 C 0.040 3.960 7 N -0.858 5.858 8 Si 0.913 3.087 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.275 1.275 12 S 2.636 3.364 13 O -0.972 6.972 14 O -0.997 6.997 15 C -0.651 4.651 16 C -0.027 4.027 17 C -0.147 4.147 18 C -0.039 4.039 19 C -0.103 4.103 20 C -0.015 4.015 21 C -0.081 4.081 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.084 4.084 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.116 0.884 29 H 0.059 0.941 30 H 0.267 0.733 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.267 7.359 7.745 16.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.672 5.672 4 C -0.422 4.422 5 H 0.108 0.892 6 C -0.167 4.167 7 N -0.498 5.498 8 Si 0.740 3.260 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.201 1.201 12 S 2.733 3.267 13 O -0.962 6.962 14 O -0.987 6.987 15 C -0.735 4.735 16 C -0.046 4.046 17 C -0.166 4.166 18 C -0.039 4.039 19 C -0.104 4.104 20 C -0.034 4.034 21 C -0.118 4.118 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.121 4.121 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.134 0.866 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.155 0.845 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.369 7.262 8.168 15.771 hybrid contribution -0.916 0.377 -0.791 1.268 sum -12.286 7.640 7.377 16.240 Atomic orbital electron populations 1.22202 0.98774 0.99939 1.01319 1.21382 0.91600 0.84073 1.04761 1.52568 1.76613 1.20575 1.17491 1.19003 1.45373 0.93876 0.83977 0.89234 1.25275 0.95110 0.96859 0.99482 1.69964 1.33959 1.16913 1.28954 0.86223 0.79072 0.79056 0.81683 1.19724 1.20969 1.20052 1.04472 0.73911 0.73890 0.74472 1.93438 1.59685 1.59450 1.83644 1.93410 1.82873 1.55994 1.66425 1.31444 1.24136 1.06152 1.11757 1.20786 0.92155 0.99190 0.92493 1.21169 0.98255 0.94837 1.02303 1.19752 0.95302 0.93796 0.95071 1.19656 0.95412 0.96354 0.98978 1.20958 0.94920 0.92611 0.94935 1.20473 0.97030 0.92300 1.01997 1.21548 0.96315 1.01004 0.96817 1.21550 1.01634 0.95197 0.97337 1.20539 0.95050 0.95541 1.00948 0.94394 0.92282 0.93453 0.86630 0.92285 0.92247 0.84747 0.85878 0.84542 0.90646 0.90367 0.91447 0.91529 0.91599 0.91519 0.90350 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 10.20 37.16 0.38 -2.74 16 2 C 0.11 2.48 6.01 -4.04 -0.02 2.46 16 3 N -0.84 -20.69 2.85 -59.91 -0.17 -20.86 16 4 C -0.29 -7.46 8.87 -15.06 -0.13 -7.59 16 5 H 0.09 2.26 7.94 -52.49 -0.42 1.84 16 6 C 0.04 1.03 4.98 -17.43 -0.09 0.94 16 7 N -0.86 -23.02 11.27 55.49 0.63 -22.39 16 8 Si 0.91 19.97 29.62 -169.99 -5.03 14.94 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 S 2.64 62.23 5.66 -107.50 -0.61 61.62 16 13 O -0.97 -25.45 16.49 -57.17 -0.94 -26.40 16 14 O -1.00 -24.69 15.84 -57.17 -0.91 -25.60 16 15 C -0.65 -12.82 5.97 -39.68 -0.24 -13.06 16 16 C -0.03 -0.47 8.54 -39.68 -0.34 -0.81 16 17 C -0.15 -2.13 9.61 -39.44 -0.38 -2.51 16 18 C -0.04 -0.54 5.74 -104.62 -0.60 -1.14 16 19 C -0.10 -1.56 5.74 -104.62 -0.60 -2.16 16 20 C -0.02 -0.28 9.10 -39.44 -0.36 -0.63 16 21 C -0.08 -0.96 5.67 -28.05 -0.16 -1.12 16 22 C -0.12 -1.14 5.98 -26.70 -0.16 -1.30 16 23 C -0.12 -1.07 5.98 -26.70 -0.16 -1.23 16 24 C -0.08 -0.85 5.67 -28.05 -0.16 -1.01 16 25 H 0.04 0.67 7.12 -51.92 -0.37 0.30 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 0.78 8.14 -51.94 -0.42 0.36 16 28 H 0.12 2.86 5.31 -51.93 -0.28 2.59 16 29 H 0.06 1.31 6.90 -51.93 -0.36 0.95 16 30 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.13 2.22 7.63 -52.49 -0.40 1.82 16 32 H 0.12 1.41 8.05 -52.48 -0.42 0.99 16 33 H 0.14 2.46 7.60 -52.49 -0.40 2.06 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -31.21 341.26 -10.91 -42.12 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.00 Total: 3.35 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: -3.02 Total: -31.92 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.45 Total: -43.26 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -1.85 Total: -52.00 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Atomic # 16 Polarization: 62.23 SS G_CDS: -0.61 Total: 61.62 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.21 -10.91 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057575537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.593 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds