Wall clock time and date at job start Fri Apr 10 2020 17:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99630 * 2 1 4 4 N 1.46498 * 109.47062 * 125.00005 * 3 2 1 5 5 C 1.35063 * 125.56631 * 269.99531 * 4 3 2 6 6 O 1.21298 * 127.28415 * 359.96359 * 5 4 3 7 7 C 1.49981 * 105.43263 * 180.02562 * 5 4 3 8 8 O 1.21301 * 127.28569 * 179.97438 * 7 5 4 9 9 N 1.35067 * 105.42893 * 359.74894 * 7 5 4 10 10 C 1.46500 * 125.56421 * 180.24162 * 9 7 5 11 11 C 1.50707 * 109.46843 * 270.19694 * 10 9 7 12 12 O 1.21277 * 119.99777 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99816 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00220 * 0.02562 * 13 11 10 15 15 C 1.46499 * 119.99820 * 180.02562 * 13 11 10 16 16 C 1.50698 * 109.47448 * 90.00043 * 15 13 11 17 17 H 1.08000 * 120.00001 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00255 * 179.97438 * 16 15 13 19 19 N 1.31513 * 119.99946 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00257 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.46901 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47161 * 119.99766 * 20 18 16 23 23 H 1.48497 * 109.47304 * 240.00520 * 20 18 16 24 24 C 1.34274 * 108.86813 * 0.41039 * 9 7 5 25 25 O 1.21483 * 124.30014 * 179.82736 * 24 9 7 26 26 H 1.08004 * 119.99577 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00324 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00047 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47381 * 4.99694 * 3 2 1 30 30 H 1.09005 * 109.46862 * 244.99775 * 3 2 1 31 31 H 1.08996 * 109.47646 * 30.19703 * 10 9 7 32 32 H 1.09003 * 109.47437 * 150.20464 * 10 9 7 33 33 H 1.08995 * 109.47238 * 90.00264 * 14 13 11 34 34 H 1.09006 * 109.47090 * 209.99885 * 14 13 11 35 35 H 1.08999 * 109.47214 * 329.99645 * 14 13 11 36 36 H 1.09000 * 109.47024 * 210.00342 * 15 13 11 37 37 H 1.08998 * 109.47237 * 329.99822 * 15 13 11 38 38 H 0.97004 * 120.00109 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.7131 1.7963 2.3683 6 8 1.6639 2.2651 2.7566 7 6 3.9737 1.6113 3.1595 8 8 4.1595 1.8981 4.3234 9 7 4.8566 1.0530 2.3034 10 6 6.2362 0.6796 2.6254 11 6 7.1494 1.8467 2.3514 12 8 6.6927 2.8879 1.9293 13 7 8.4735 1.7333 2.5756 14 6 9.0252 0.4754 3.0849 15 6 9.3612 2.8681 2.3098 16 6 9.4794 3.7149 3.5508 17 1 8.9468 3.4355 4.4479 18 6 10.2681 4.8457 3.5412 19 7 10.9170 5.1856 2.4490 20 14 10.4151 5.8950 5.0797 21 1 9.5923 5.3014 6.1642 22 1 11.8359 5.9485 5.5084 23 1 9.9334 7.2694 4.7894 24 6 4.2647 0.8994 1.1080 25 8 4.8083 0.4247 0.1308 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8501 -0.9354 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6212 1.4026 -0.9314 31 1 6.3023 0.4059 3.6783 32 1 6.5362 -0.1686 2.0099 33 1 9.2968 -0.1676 2.2478 34 1 9.9109 0.6837 3.6852 35 1 8.2786 -0.0259 3.7008 36 1 10.3470 2.4995 2.0262 37 1 8.9504 3.4684 1.4981 38 1 11.4716 5.9814 2.4421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069535332.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:35 Heat of formation + Delta-G solvation = -54.224114 kcal Electronic energy + Delta-G solvation = -25680.022316 eV Core-core repulsion = 21719.147913 eV Total energy + Delta-G solvation = -3960.874403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.49146 -39.54657 -39.31795 -38.59312 -36.63124 -36.09756 -34.98075 -33.88001 -32.67587 -30.06633 -27.98962 -26.76280 -25.76723 -25.63879 -23.15167 -22.21116 -21.82774 -20.38007 -19.09099 -18.03698 -17.77648 -17.22308 -16.81734 -16.58643 -16.45406 -16.13907 -15.49785 -15.26130 -14.96517 -14.82965 -14.63966 -14.54387 -14.03872 -13.81100 -13.02513 -12.89348 -12.83406 -12.64246 -12.28540 -11.98598 -11.96395 -11.91235 -11.27941 -11.15937 -10.92145 -10.66844 -10.56791 -10.44129 -10.27063 -10.20050 -9.89747 -9.67329 -9.06024 -8.47942 -7.80920 -6.08886 -4.13944 0.17826 1.33424 1.76509 2.10137 2.38956 2.45328 3.11574 3.28384 3.36541 3.41156 3.68861 3.80026 4.29253 4.40391 4.41898 4.66927 4.81223 4.89311 4.95313 5.02689 5.11787 5.18253 5.26274 5.40816 5.46689 5.52583 5.81161 6.10546 6.10622 6.18853 6.40561 6.52526 6.89792 7.02965 7.33451 7.36484 7.41658 7.86787 8.16006 8.20156 8.73927 8.92750 9.51477 10.99329 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.021925 B = 0.003536 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.762506 B = 7915.596808 C = 8348.355474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.185 4.185 3 C 0.149 3.851 4 N -0.570 5.570 5 C 0.515 3.485 6 O -0.414 6.414 7 C 0.512 3.488 8 O -0.403 6.403 9 N -0.556 5.556 10 C 0.100 3.900 11 C 0.490 3.510 12 O -0.531 6.531 13 N -0.594 5.594 14 C 0.078 3.922 15 C 0.246 3.754 16 C -0.529 4.529 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.718 3.282 25 O -0.485 6.485 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.916 -14.829 -3.690 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.204 4.204 3 C 0.030 3.970 4 N -0.319 5.319 5 C 0.296 3.704 6 O -0.278 6.278 7 C 0.292 3.708 8 O -0.267 6.267 9 N -0.304 5.304 10 C -0.024 4.024 11 C 0.274 3.726 12 O -0.408 6.408 13 N -0.326 5.326 14 C -0.066 4.066 15 C 0.127 3.873 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 C 0.421 3.579 25 O -0.353 6.353 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.136 0.864 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.159 -13.965 -3.669 21.670 hybrid contribution 0.358 0.599 0.800 1.061 sum -15.802 -13.366 -2.869 20.894 Atomic orbital electron populations 1.23995 0.95547 1.02673 0.97266 1.23153 0.96352 0.98299 1.02613 1.20894 0.91149 0.97434 0.87559 1.46715 1.13142 1.58427 1.13623 1.20873 0.89131 0.77800 0.82586 1.90821 1.26254 1.37001 1.73747 1.20786 0.85532 0.77611 0.86848 1.90862 1.79647 1.42611 1.13559 1.46165 1.14146 1.58303 1.11736 1.21795 0.76892 0.98781 1.04931 1.20288 0.83521 0.88801 0.79974 1.90710 1.74906 1.29520 1.45711 1.48132 1.06463 1.15188 1.62848 1.21752 1.00290 0.85908 0.98696 1.19365 0.87880 0.82427 0.97655 1.21450 1.28355 1.09156 0.97771 0.92290 1.24936 0.95363 0.97236 0.96540 1.69940 1.30354 1.25900 1.27087 0.86431 0.77657 0.80356 0.82945 1.19699 1.20896 1.20839 1.15797 0.80689 0.78082 0.83368 1.91013 1.66507 1.44638 1.33171 0.87658 0.87893 0.86443 0.87662 0.86926 0.85529 0.85478 0.93076 0.90145 0.92429 0.94574 0.93735 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 14.32 29.01 0.42 -0.54 16 2 C -0.19 -1.36 9.85 -36.03 -0.35 -1.72 16 3 C 0.15 1.27 6.30 -5.20 -0.03 1.24 16 4 N -0.57 -6.69 2.64 -122.51 -0.32 -7.01 16 5 C 0.52 6.87 8.31 -11.20 -0.09 6.77 16 6 O -0.41 -6.01 17.88 5.54 0.10 -5.92 16 7 C 0.51 7.68 8.31 -11.20 -0.09 7.58 16 8 O -0.40 -7.01 17.89 5.54 0.10 -6.91 16 9 N -0.56 -7.97 2.15 -122.50 -0.26 -8.23 16 10 C 0.10 1.37 4.89 -5.19 -0.03 1.34 16 11 C 0.49 9.78 7.74 -10.98 -0.09 9.69 16 12 O -0.53 -13.12 16.01 5.56 0.09 -13.03 16 13 N -0.59 -11.99 2.86 -182.95 -0.52 -12.51 16 14 C 0.08 1.09 10.24 59.85 0.61 1.70 16 15 C 0.25 6.29 5.16 -5.20 -0.03 6.26 16 16 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 17 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 20 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.72 9.84 8.32 -87.81 -0.73 9.11 16 25 O -0.48 -7.40 17.27 5.38 0.09 -7.31 16 26 H 0.11 0.51 8.06 -52.48 -0.42 0.09 16 27 H 0.10 0.56 7.84 -52.49 -0.41 0.15 16 28 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 29 H 0.11 0.76 7.75 -51.93 -0.40 0.36 16 30 H 0.11 0.89 7.98 -51.93 -0.41 0.47 16 31 H 0.13 1.41 7.36 -51.93 -0.38 1.03 16 32 H 0.13 1.34 7.94 -51.93 -0.41 0.93 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 35 H 0.06 0.60 6.44 -51.93 -0.33 0.27 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 348.38 15.07 5.25 5.25 Total: -1.00 -36.20 348.38 -4.99 -41.20 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -4.39 Total: -4.66 kcal Atomic # 6 Polarization: 28.75 SS G_CDS: -0.83 Total: 27.92 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.37 Total: -53.45 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: 0.38 Total: -33.16 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.20 -4.99 -41.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069535332.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.029 kcal (2) G-P(sol) polarization free energy of solvation -36.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds