Wall clock time and date at job start Fri Apr 10 2020 17:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99630 * 2 1 4 4 N 1.46498 * 109.47062 * 125.00005 * 3 2 1 5 5 C 1.35063 * 125.56631 * 269.99531 * 4 3 2 6 6 O 1.21298 * 127.28415 * 359.96359 * 5 4 3 7 7 C 1.49981 * 105.43263 * 180.02562 * 5 4 3 8 8 O 1.21301 * 127.28569 * 179.97438 * 7 5 4 9 9 N 1.35067 * 105.42893 * 359.74894 * 7 5 4 10 10 C 1.46500 * 125.56421 * 180.24162 * 9 7 5 11 11 C 1.50707 * 109.46843 * 270.19694 * 10 9 7 12 12 O 1.21277 * 119.99777 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99816 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00220 * 0.02562 * 13 11 10 15 15 C 1.46499 * 119.99820 * 180.02562 * 13 11 10 16 16 C 1.50698 * 109.47448 * 90.00043 * 15 13 11 17 17 H 1.08000 * 120.00001 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00255 * 179.97438 * 16 15 13 19 19 N 1.31513 * 119.99946 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00257 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.46901 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47161 * 119.99766 * 20 18 16 23 23 H 1.48497 * 109.47304 * 240.00520 * 20 18 16 24 24 C 1.34274 * 108.86813 * 0.41039 * 9 7 5 25 25 O 1.21483 * 124.30014 * 179.82736 * 24 9 7 26 26 H 1.08004 * 119.99577 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00324 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00047 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47381 * 4.99694 * 3 2 1 30 30 H 1.09005 * 109.46862 * 244.99775 * 3 2 1 31 31 H 1.08996 * 109.47646 * 30.19703 * 10 9 7 32 32 H 1.09003 * 109.47437 * 150.20464 * 10 9 7 33 33 H 1.08995 * 109.47238 * 90.00264 * 14 13 11 34 34 H 1.09006 * 109.47090 * 209.99885 * 14 13 11 35 35 H 1.08999 * 109.47214 * 329.99645 * 14 13 11 36 36 H 1.09000 * 109.47024 * 210.00342 * 15 13 11 37 37 H 1.08998 * 109.47237 * 329.99822 * 15 13 11 38 38 H 0.97004 * 120.00109 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.7131 1.7963 2.3683 6 8 1.6639 2.2651 2.7566 7 6 3.9737 1.6113 3.1595 8 8 4.1595 1.8981 4.3234 9 7 4.8566 1.0530 2.3034 10 6 6.2362 0.6796 2.6254 11 6 7.1494 1.8467 2.3514 12 8 6.6927 2.8879 1.9293 13 7 8.4735 1.7333 2.5756 14 6 9.0252 0.4754 3.0849 15 6 9.3612 2.8681 2.3098 16 6 9.4794 3.7149 3.5508 17 1 8.9468 3.4355 4.4479 18 6 10.2681 4.8457 3.5412 19 7 10.9170 5.1856 2.4490 20 14 10.4151 5.8950 5.0797 21 1 9.5923 5.3014 6.1642 22 1 11.8359 5.9485 5.5084 23 1 9.9334 7.2694 4.7894 24 6 4.2647 0.8994 1.1080 25 8 4.8083 0.4247 0.1308 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8501 -0.9354 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6212 1.4026 -0.9314 31 1 6.3023 0.4059 3.6783 32 1 6.5362 -0.1686 2.0099 33 1 9.2968 -0.1676 2.2478 34 1 9.9109 0.6837 3.6852 35 1 8.2786 -0.0259 3.7008 36 1 10.3470 2.4995 2.0262 37 1 8.9504 3.4684 1.4981 38 1 11.4716 5.9814 2.4421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069535332.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:34 Heat of formation + Delta-G solvation = -79.895776 kcal Electronic energy + Delta-G solvation = -25681.135523 eV Core-core repulsion = 21719.147913 eV Total energy + Delta-G solvation = -3961.987610 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.58837 -40.91257 -40.49986 -39.90643 -37.73873 -37.10971 -36.61643 -34.88073 -34.56951 -31.31993 -29.58615 -27.82907 -27.17260 -26.77927 -24.93869 -23.31424 -23.00245 -21.01544 -20.53713 -19.10707 -18.97786 -18.72762 -18.34685 -17.91062 -17.76294 -17.41044 -16.73953 -16.60631 -16.37513 -16.10254 -15.85963 -15.62451 -15.47737 -14.54931 -14.53148 -14.42364 -14.03459 -13.84031 -13.50097 -13.37119 -13.28685 -13.13253 -12.81979 -12.56909 -12.50974 -12.27887 -12.24382 -11.88535 -11.69938 -11.52182 -11.18057 -10.67146 -10.60628 -10.48904 -9.50241 -8.25376 -6.39609 -0.96087 0.44296 0.70125 1.26272 1.30355 1.34689 1.37492 1.48834 1.48912 1.62618 2.25298 2.40321 2.63360 3.04939 3.38255 3.49212 3.80786 3.87960 3.92991 4.05832 4.11506 4.21676 4.44292 4.54459 4.60612 4.75935 4.95826 4.98648 5.02012 5.20134 5.30883 5.41081 5.51219 5.61687 5.68946 5.77210 5.91268 6.02381 6.28948 6.60664 6.71130 7.19592 7.34748 8.82014 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.021925 B = 0.003536 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.762506 B = 7915.596808 C = 8348.355474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.202 4.202 3 C 0.141 3.859 4 N -0.559 5.559 5 C 0.525 3.475 6 O -0.425 6.425 7 C 0.512 3.488 8 O -0.432 6.432 9 N -0.558 5.558 10 C 0.110 3.890 11 C 0.478 3.522 12 O -0.592 6.592 13 N -0.601 5.601 14 C 0.069 3.931 15 C 0.260 3.740 16 C -0.542 4.542 17 H 0.053 0.947 18 C 0.008 3.992 19 N -0.927 5.927 20 Si 0.965 3.035 21 H -0.268 1.268 22 H -0.267 1.267 23 H -0.284 1.284 24 C 0.720 3.280 25 O -0.498 6.498 26 H 0.120 0.880 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.030 0.970 37 H -0.003 1.003 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.924 -16.590 -2.891 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.220 4.220 3 C 0.023 3.977 4 N -0.308 5.308 5 C 0.306 3.694 6 O -0.291 6.291 7 C 0.293 3.707 8 O -0.297 6.297 9 N -0.305 5.305 10 C -0.013 4.013 11 C 0.264 3.736 12 O -0.473 6.473 13 N -0.332 5.332 14 C -0.073 4.073 15 C 0.138 3.862 16 C -0.581 4.581 17 H 0.072 0.928 18 C -0.191 4.191 19 N -0.567 5.567 20 Si 0.789 3.211 21 H -0.192 1.192 22 H -0.192 1.192 23 H -0.210 1.210 24 C 0.424 3.576 25 O -0.368 6.368 26 H 0.138 0.862 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.177 0.823 32 H 0.185 0.815 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.048 0.952 37 H 0.015 0.985 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.171 -15.794 -2.883 23.507 hybrid contribution 0.641 1.115 0.469 1.368 sum -16.530 -14.679 -2.414 22.239 Atomic orbital electron populations 1.24221 0.95146 1.03793 0.94888 1.23065 0.96753 0.97531 1.04694 1.21234 0.91034 0.98881 0.86512 1.46790 1.12841 1.57360 1.13765 1.20556 0.88359 0.77665 0.82832 1.90818 1.26491 1.37716 1.74036 1.21069 0.86231 0.76804 0.86591 1.90841 1.80377 1.43782 1.14750 1.46242 1.14291 1.58087 1.11915 1.21945 0.75131 0.96466 1.07755 1.21385 0.83802 0.89865 0.78499 1.90674 1.75987 1.32406 1.48277 1.48132 1.06456 1.15732 1.62898 1.22129 1.01165 0.83639 1.00334 1.18794 0.88210 0.83846 0.95335 1.21726 1.28160 1.09940 0.98254 0.92826 1.25828 0.95029 0.98545 0.99676 1.70049 1.31027 1.26555 1.29087 0.85406 0.78395 0.78126 0.79125 1.19223 1.19179 1.20973 1.15853 0.81086 0.77758 0.82927 1.91006 1.66933 1.45350 1.33486 0.86161 0.87161 0.86503 0.86349 0.86423 0.82255 0.81481 0.90138 0.91110 0.88017 0.95169 0.98505 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 14.32 67.78 0.97 -0.43 16 2 C -0.20 -2.60 9.85 25.64 0.25 -2.35 16 3 C 0.14 2.21 6.30 85.63 0.54 2.75 16 4 N -0.56 -12.49 2.64 -778.32 -2.06 -14.55 16 5 C 0.53 13.55 8.31 87.39 0.73 14.27 16 6 O -0.43 -11.97 17.88 -3.09 -0.06 -12.03 16 7 C 0.51 14.95 8.31 87.39 0.73 15.68 16 8 O -0.43 -14.81 17.89 -3.09 -0.06 -14.86 16 9 N -0.56 -15.21 2.15 -778.30 -1.67 -16.89 16 10 C 0.11 2.74 4.89 85.64 0.42 3.16 16 11 C 0.48 18.88 7.74 87.66 0.68 19.56 16 12 O -0.59 -30.13 16.01 -3.02 -0.05 -30.18 16 13 N -0.60 -24.05 2.86 -851.13 -2.43 -26.48 16 14 C 0.07 1.75 10.24 127.77 1.31 3.06 16 15 C 0.26 13.74 5.16 85.63 0.44 14.18 16 16 C -0.54 -31.07 9.39 25.60 0.24 -30.83 16 17 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 18 C 0.01 0.48 5.46 84.65 0.46 0.94 16 19 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 20 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 24 C 0.72 18.86 8.32 179.37 1.49 20.35 16 25 O -0.50 -14.52 17.27 -3.66 -0.06 -14.59 16 26 H 0.12 0.83 8.06 -2.91 -0.02 0.81 16 27 H 0.11 0.92 7.84 -2.91 -0.02 0.90 16 28 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 29 H 0.12 1.53 7.75 -2.39 -0.02 1.51 16 30 H 0.12 1.72 7.98 -2.38 -0.02 1.70 16 31 H 0.16 2.95 7.36 -2.39 -0.02 2.93 16 32 H 0.17 2.84 7.94 -2.39 -0.02 2.82 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.96 8.07 -2.38 -0.02 1.94 16 35 H 0.10 1.69 6.44 -2.39 -0.02 1.67 16 36 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 37 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 38 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -82.06 348.38 5.28 -76.78 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: 1.09 Total: 0.95 kcal Atomic # 6 Polarization: 52.08 SS G_CDS: 8.26 Total: 60.34 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -5.88 Total: -113.68 kcal Atomic # 8 Polarization: -71.44 SS G_CDS: -0.22 Total: -71.66 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -82.06 5.28 -76.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069535332.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.114 kcal (2) G-P(sol) polarization free energy of solvation -82.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds