Wall clock time and date at job start Fri Apr 10 2020 17:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00117 * 2 1 4 4 H 1.48505 * 109.46928 * 269.99956 * 3 2 1 5 5 H 1.48503 * 109.47102 * 29.99618 * 3 2 1 6 6 H 1.48494 * 109.47199 * 149.99805 * 3 2 1 7 7 C 1.38948 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00058 * 160.28281 * 7 2 1 9 9 N 1.37102 * 120.00206 * 340.27965 * 7 2 1 10 10 C 1.34772 * 120.00068 * 317.65667 * 9 7 2 11 11 O 1.21297 * 120.00004 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00148 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46950 * 179.97438 * 12 10 9 14 14 C 1.34437 * 126.82123 * 125.00166 * 13 12 10 15 15 N 1.30833 * 108.07465 * 179.97438 * 14 13 12 16 16 C 1.33240 * 109.83011 * 359.97438 * 15 14 13 17 17 N 1.48024 * 125.52647 * 180.02562 * 16 15 14 18 18 O 1.21802 * 119.99540 * 359.97438 * 17 16 15 19 19 O 1.21797 * 120.00093 * 179.97438 * 17 16 15 20 20 N 1.30720 * 108.94525 * 359.71577 * 16 15 14 21 21 C 1.46500 * 119.99825 * 137.64816 * 9 7 2 22 22 C 1.54968 * 110.92506 * 311.62606 * 21 9 7 23 23 C 1.54269 * 104.15757 * 156.29362 * 22 21 9 24 24 C 1.53870 * 106.64331 * 336.45376 * 23 22 21 25 25 C 1.54272 * 106.59806 * 359.96838 * 24 23 22 26 26 H 0.96997 * 119.99923 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46929 * 299.99310 * 12 10 9 28 28 H 1.08994 * 109.47103 * 59.99719 * 12 10 9 29 29 H 1.07993 * 125.95969 * 0.02562 * 14 13 12 30 30 H 1.08999 * 110.67182 * 188.32700 * 21 9 7 31 31 H 1.09001 * 110.47168 * 37.64859 * 22 21 9 32 32 H 1.08991 * 110.53132 * 274.97703 * 22 21 9 33 33 H 1.08994 * 110.03313 * 217.13924 * 23 22 21 34 34 H 1.09004 * 110.02593 * 95.76174 * 23 22 21 35 35 H 1.08999 * 110.03859 * 119.25411 * 24 23 22 36 36 H 1.08999 * 110.03179 * 240.63943 * 24 23 22 37 37 H 1.09003 * 110.48400 * 142.29000 * 25 24 23 38 38 H 1.08996 * 110.48824 * 264.80469 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0414 -1.2309 -0.3150 9 7 1.3837 -2.3557 0.4017 10 6 0.5809 -2.3451 1.4842 11 8 0.4119 -1.3162 2.1039 12 6 -0.1067 -3.6116 1.9248 13 7 -0.9151 -3.3394 3.1159 14 6 -2.2277 -3.5844 3.2720 15 7 -2.5721 -3.2005 4.4744 16 6 -1.5114 -2.7079 5.1127 17 7 -1.5095 -2.1751 6.4938 18 8 -2.5397 -2.1637 7.1434 19 8 -0.4778 -1.7483 6.9804 20 7 -0.4713 -2.7775 4.3240 21 6 1.5881 -3.5985 -0.3465 22 6 1.4027 -3.3658 -1.8674 23 6 2.2102 -4.5042 -2.5245 24 6 3.2649 -4.9472 -1.4954 25 6 3.0627 -4.0622 -0.2482 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7506 -3.9732 1.1231 28 1 0.6416 -4.3686 2.1593 29 1 -2.8832 -4.0226 2.5341 30 1 0.9137 -4.3773 0.0094 31 1 1.8064 -2.3956 -2.1566 32 1 0.3498 -3.4386 -2.1396 33 1 2.6997 -4.1413 -3.4282 34 1 1.5511 -5.3381 -2.7663 35 1 3.1173 -5.9958 -1.2371 36 1 4.2663 -4.8001 -1.9001 37 1 3.2202 -4.6425 0.6610 38 1 3.7365 -3.2059 -0.2747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078207356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:44 Heat of formation + Delta-G solvation = 63.034441 kcal Electronic energy + Delta-G solvation = -25985.828535 eV Core-core repulsion = 22062.331596 eV Total energy + Delta-G solvation = -3923.496940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.08632 -43.17337 -40.62781 -38.42231 -38.05004 -35.75411 -35.07421 -33.56770 -33.17997 -30.41118 -29.39534 -28.41535 -28.17220 -26.28778 -23.86817 -23.41614 -21.79856 -21.30262 -20.90991 -20.36465 -20.08128 -19.26954 -18.61018 -17.90426 -17.82875 -17.00185 -16.60182 -16.28969 -16.07620 -15.73093 -15.64745 -14.97152 -14.20660 -14.09004 -13.93145 -13.53539 -13.35473 -13.09781 -12.96466 -12.89430 -12.72354 -12.66605 -12.61435 -12.32022 -12.06099 -11.92737 -11.84200 -11.80315 -11.62185 -11.55123 -11.37010 -11.09019 -10.76231 -10.10866 -9.11179 -8.28008 -5.98385 -1.32127 -0.69908 0.21744 0.98066 1.25308 1.30012 1.39248 1.43518 2.16537 2.31769 2.67839 3.00182 3.20513 3.36958 3.77990 3.87994 3.92945 3.97377 4.04858 4.09996 4.27610 4.48759 4.54962 4.74430 4.76521 4.85147 4.88128 4.98851 5.13071 5.25243 5.28256 5.34642 5.45352 5.55027 5.61991 5.70660 5.88231 6.15564 6.47023 6.97973 7.12164 7.64443 8.23847 8.79258 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.004769 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.198969 B = 5870.132654 C = 7190.086267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.030 3.970 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.448 5.448 10 C 0.441 3.559 11 O -0.573 6.573 12 C 0.108 3.892 13 N -0.320 5.320 14 C 0.303 3.697 15 N -0.521 5.521 16 C 0.241 3.759 17 N 0.066 4.934 18 O -0.090 6.090 19 O -0.151 6.151 20 N -0.224 5.224 21 C 0.117 3.883 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.112 4.112 25 C -0.132 4.132 26 H 0.254 0.746 27 H 0.181 0.819 28 H 0.147 0.853 29 H 0.307 0.693 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 -16.104 -4.426 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.230 1.230 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.169 5.169 10 C 0.227 3.773 11 O -0.453 6.453 12 C -0.015 4.015 13 N -0.114 5.114 14 C 0.009 3.991 15 N -0.253 5.253 16 C -0.118 4.118 17 N 0.594 4.406 18 O -0.317 6.317 19 O -0.361 6.361 20 N -0.065 5.065 21 C 0.013 3.987 22 C -0.159 4.159 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.171 4.171 26 H 0.063 0.937 27 H 0.198 0.802 28 H 0.165 0.835 29 H 0.322 0.678 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.977 -15.491 -4.477 16.154 hybrid contribution 0.394 1.830 0.230 1.886 sum -0.583 -13.661 -4.247 14.317 Atomic orbital electron populations 1.69892 1.07450 1.26982 1.45102 1.25723 0.95263 1.01742 0.94994 0.85651 0.78654 0.80039 0.78193 1.18900 1.22974 1.19801 1.18889 0.95156 0.85569 1.46782 0.90477 1.43404 1.42915 1.08348 1.22223 1.20573 0.84756 0.89732 0.82211 1.90639 1.63835 1.34912 1.55870 1.22443 0.98119 0.97794 0.83133 1.50417 1.09681 1.41614 1.09706 1.27550 0.83774 0.94001 0.93730 1.69941 1.28125 1.20015 1.07266 1.23900 0.91388 1.07688 0.88871 1.41764 1.00856 0.98641 0.99303 1.94546 1.22131 1.57442 1.57619 1.94644 1.22341 1.48094 1.71007 1.78263 1.20704 1.14082 0.93489 1.22512 0.97259 0.86306 0.92589 1.22482 0.99829 0.99028 0.94585 1.22068 0.97542 0.97685 0.97995 1.22038 0.99031 0.99730 0.94241 1.22652 0.96335 0.99056 0.99070 0.93720 0.80220 0.83515 0.67825 0.87054 0.93439 0.92236 0.92235 0.89777 0.89522 0.91995 0.90942 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.58 11.67 21.66 0.25 -48.33 16 2 C 0.03 1.59 4.33 84.93 0.37 1.96 16 3 Si 0.95 44.86 29.60 68.60 2.03 46.89 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.34 -16.70 7.42 84.04 0.62 -16.07 16 8 H 0.08 3.80 7.02 -2.91 -0.02 3.78 16 9 N -0.45 -18.50 2.57 -606.32 -1.56 -20.06 16 10 C 0.44 18.70 7.01 87.66 0.61 19.32 16 11 O -0.57 -31.80 13.39 -3.08 -0.04 -31.84 16 12 C 0.11 2.77 5.36 85.63 0.46 3.23 16 13 N -0.32 -9.60 3.40 -355.81 -1.21 -10.81 16 14 C 0.30 6.97 12.63 180.36 2.28 9.25 16 15 N -0.52 -16.65 11.15 -194.43 -2.17 -18.82 16 16 C 0.24 9.24 9.01 256.53 2.31 11.55 16 17 N 0.07 2.58 4.45 -53.26 -0.24 2.34 16 18 O -0.09 -3.27 19.23 18.88 0.36 -2.91 16 19 O -0.15 -6.14 19.22 18.89 0.36 -5.78 16 20 N -0.22 -8.95 11.79 -53.46 -0.63 -9.58 16 21 C 0.12 3.32 3.16 46.31 0.15 3.46 16 22 C -0.12 -3.45 6.32 31.70 0.20 -3.25 16 23 C -0.11 -2.29 6.80 31.32 0.21 -2.08 16 24 C -0.11 -2.12 6.80 31.32 0.21 -1.90 16 25 C -0.13 -3.39 6.42 31.67 0.20 -3.19 16 26 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.18 2.63 7.59 -2.39 -0.02 2.61 16 28 H 0.15 2.76 7.95 -2.39 -0.02 2.75 16 29 H 0.31 2.22 8.06 -2.91 -0.02 2.19 16 30 H 0.11 2.16 5.96 -2.39 -0.01 2.15 16 31 H 0.05 1.75 6.96 -2.39 -0.02 1.73 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.04 1.42 6.92 -2.39 -0.02 1.41 16 Total: -1.00 -81.78 330.68 5.90 -75.88 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: 1.11 Total: 0.73 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 7.63 Total: 22.27 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -5.55 Total: -105.25 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: 0.68 Total: -40.53 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -81.78 5.90 -75.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.913 kcal (2) G-P(sol) polarization free energy of solvation -81.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds