Wall clock time and date at job start Fri Apr 10 2020 17:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46748 * 2 1 4 4 C 1.46498 * 119.99723 * 274.99675 * 3 2 1 5 5 C 1.50704 * 109.46932 * 275.00339 * 4 3 2 6 6 H 1.08001 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99936 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99810 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99791 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47370 * 89.99637 * 9 7 5 11 11 H 1.48500 * 109.46962 * 209.99332 * 9 7 5 12 12 H 1.48504 * 109.47378 * 329.99543 * 9 7 5 13 13 S 1.65599 * 120.00331 * 94.99805 * 3 2 1 14 14 O 1.42104 * 106.39790 * 336.45820 * 13 3 2 15 15 O 1.42094 * 106.40294 * 203.54018 * 13 3 2 16 16 C 1.76195 * 107.21878 * 89.99376 * 13 3 2 17 17 C 1.32568 * 119.99726 * 117.79436 * 16 13 3 18 18 C 1.47815 * 119.99802 * 17.60609 * 17 16 13 19 19 C 1.39543 * 120.13755 * 225.40516 * 18 17 16 20 20 C 1.37977 * 119.85404 * 179.72179 * 19 18 17 21 21 C 1.38348 * 120.13669 * 0.57027 * 20 19 18 22 22 C 1.50706 * 119.85024 * 179.69843 * 21 20 19 23 23 C 1.38340 * 120.29124 * 359.68732 * 21 20 19 24 24 C 1.37977 * 120.13948 * 0.03514 * 23 21 20 25 25 H 1.09000 * 109.47307 * 60.00812 * 1 2 3 26 26 H 1.09005 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47871 * 300.00438 * 1 2 3 28 28 H 1.08990 * 109.47434 * 239.99587 * 2 1 3 29 29 H 1.08998 * 109.46812 * 119.99058 * 2 1 3 30 30 H 1.09000 * 109.47187 * 34.99757 * 4 3 2 31 31 H 1.09002 * 109.47079 * 155.00185 * 4 3 2 32 32 H 0.96996 * 119.99576 * 180.02562 * 8 7 5 33 33 H 1.08003 * 120.00774 * 297.80085 * 16 13 3 34 34 H 1.08003 * 120.00355 * 197.60071 * 17 16 13 35 35 H 1.07996 * 120.07266 * 359.97438 * 19 18 17 36 36 H 1.07992 * 119.92867 * 180.27820 * 20 19 18 37 37 H 1.09000 * 109.47215 * 269.97827 * 22 21 20 38 38 H 1.08998 * 109.47256 * 29.98583 * 22 21 20 39 39 H 1.09001 * 109.46542 * 149.98251 * 22 21 20 40 40 H 1.07998 * 119.93231 * 180.02562 * 23 21 20 41 41 H 1.07999 * 120.06908 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7887 -1.8823 6 1 4.1723 1.1117 -1.3834 7 6 3.8529 2.3613 -3.0844 8 7 3.0280 3.1862 -3.6916 9 14 5.5099 1.9653 -3.8505 10 1 5.3750 0.7823 -4.7379 11 1 5.9788 3.1290 -4.6449 12 1 6.4934 1.6697 -2.7777 13 16 2.4120 2.1204 1.4286 14 8 1.6866 1.4416 2.4447 15 8 2.3054 3.5187 1.1997 16 6 4.1167 1.7943 1.7321 17 6 4.9823 2.7964 1.7952 18 6 4.4994 4.1780 2.0024 19 6 5.0081 5.2215 1.2280 20 6 4.5490 6.5081 1.4224 21 6 3.5950 6.7663 2.3905 22 6 3.1031 8.1751 2.6020 23 6 3.0906 5.7371 3.1652 24 6 3.5372 4.4453 2.9768 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3635 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 1.3617 1.8096 -1.9453 31 1 2.0920 3.1803 -1.0757 32 1 3.2798 3.5886 -4.5374 33 1 4.4567 0.7780 1.8665 34 1 6.0402 2.6034 1.6954 35 1 5.7565 5.0219 0.4755 36 1 4.9386 7.3158 0.8207 37 1 3.7283 8.6706 3.3447 38 1 3.1536 8.7226 1.6609 39 1 2.0716 8.1507 2.9533 40 1 2.3458 5.9452 3.9190 41 1 3.1429 3.6427 3.5825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096190019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:49 Heat of formation + Delta-G solvation = -24.676072 kcal Electronic energy + Delta-G solvation = -24308.306058 eV Core-core repulsion = 20895.006169 eV Total energy + Delta-G solvation = -3413.299889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.17066 -36.52193 -36.00636 -35.24538 -34.42483 -32.71027 -31.09918 -30.61429 -29.91367 -26.64669 -26.41857 -23.16473 -22.69642 -22.10953 -21.56554 -20.23384 -17.95611 -17.10394 -16.62247 -16.20348 -15.62375 -15.20858 -15.12209 -14.61598 -14.29425 -14.17766 -13.69503 -13.43976 -13.29121 -13.10278 -12.90730 -12.57149 -12.17131 -12.08603 -12.00942 -11.91526 -11.63444 -11.26413 -11.09322 -11.03677 -10.96704 -10.94974 -10.84171 -10.48131 -10.44314 -10.33279 -9.94070 -9.83247 -9.67033 -8.50098 -8.46554 -8.05551 -7.90931 -6.11424 -4.17635 0.90605 1.35084 1.81952 2.20574 3.22581 3.29977 3.31424 3.73559 4.09734 4.35395 4.46040 4.80404 5.04017 5.09736 5.13193 5.23139 5.23825 5.44189 5.46658 5.61112 5.69567 5.72004 5.79451 5.84536 5.91976 5.96587 6.08892 6.12387 6.31287 6.33668 6.37165 6.45199 6.67293 6.70892 6.71372 6.83071 6.88549 7.32329 7.35992 7.45104 7.66424 7.85622 8.15386 8.86553 9.47929 10.96511 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.011283 B = 0.006745 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.958874 B = 4149.994803 C = 5585.866680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 N -0.981 5.981 4 C 0.245 3.755 5 C -0.541 4.541 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 S 2.672 3.328 14 O -0.988 6.988 15 O -0.942 6.942 16 C -0.742 4.742 17 C 0.056 3.944 18 C -0.089 4.089 19 C -0.074 4.074 20 C -0.124 4.124 21 C -0.075 4.075 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.062 4.062 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.264 0.736 33 H 0.154 0.846 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.696 2.467 11.047 11.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.820 5.820 4 C 0.123 3.877 5 C -0.580 4.580 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 S 2.762 3.238 14 O -0.979 6.979 15 O -0.933 6.933 16 C -0.847 4.847 17 C 0.036 3.964 18 C -0.089 4.089 19 C -0.092 4.092 20 C -0.142 4.142 21 C -0.075 4.075 22 C -0.170 4.170 23 C -0.137 4.137 24 C -0.081 4.081 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.172 0.828 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.138 0.862 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.133 3.039 11.387 11.840 hybrid contribution 1.744 -0.876 -1.018 2.201 sum 2.877 2.163 10.369 10.976 Atomic orbital electron populations 1.22204 0.96724 1.01465 1.02485 1.21049 0.93891 0.82855 1.02260 1.57391 1.77980 1.23069 1.23584 1.19229 0.97187 0.92525 0.78721 1.21565 1.02331 1.27984 1.06122 0.92172 1.24924 0.97127 0.94814 0.96872 1.69933 1.35931 1.29769 1.16993 0.86622 0.84135 0.78020 0.79397 1.20532 1.21044 1.19908 1.02415 0.74445 0.74009 0.72903 1.93505 1.70948 1.76130 1.57269 1.93706 1.85882 1.28613 1.85057 1.33898 1.27946 1.06702 1.16115 1.21663 0.99780 0.90437 0.84505 1.19021 0.98578 0.92884 0.98446 1.21058 0.98929 0.91976 0.97266 1.20831 0.98300 0.96585 0.98527 1.19892 0.96330 0.95541 0.95703 1.20791 1.01071 0.92962 1.02146 1.20677 1.00396 0.92216 1.00375 1.20945 0.93855 0.96926 0.96345 0.92015 0.92248 0.92538 0.90082 0.91780 0.94201 0.92725 0.92620 0.82819 0.85409 0.85782 0.86171 0.91525 0.91558 0.91623 0.86225 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.24 37.16 0.38 -2.35 16 2 C 0.13 2.25 6.06 -4.04 -0.02 2.22 16 3 N -0.98 -20.65 2.77 -115.66 -0.32 -20.97 16 4 C 0.25 6.11 5.43 -5.19 -0.03 6.08 16 5 C -0.54 -14.27 9.38 -34.44 -0.32 -14.60 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 9 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 S 2.67 54.21 4.78 -107.50 -0.51 53.70 16 14 O -0.99 -20.65 16.99 -57.17 -0.97 -21.62 16 15 O -0.94 -20.91 11.62 -57.17 -0.66 -21.57 16 16 C -0.74 -13.30 10.10 28.83 0.29 -13.01 16 17 C 0.06 0.95 9.72 -37.57 -0.37 0.59 16 18 C -0.09 -1.57 3.92 -105.01 -0.41 -1.98 16 19 C -0.07 -1.26 9.79 -39.19 -0.38 -1.64 16 20 C -0.12 -1.92 9.68 -39.64 -0.38 -2.31 16 21 C -0.07 -1.10 5.89 -104.54 -0.62 -1.72 16 22 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 23 C -0.12 -1.84 9.68 -39.64 -0.38 -2.23 16 24 C -0.06 -1.06 6.51 -39.20 -0.25 -1.32 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 29 H 0.06 1.02 7.61 -51.93 -0.40 0.63 16 30 H 0.04 1.03 8.11 -51.93 -0.42 0.61 16 31 H 0.05 1.49 6.91 -51.93 -0.36 1.13 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.15 2.41 8.06 -52.48 -0.42 1.99 16 34 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 35 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.69 8.08 -51.93 -0.42 0.28 16 39 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.11 1.75 7.41 -52.49 -0.39 1.36 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -31.72 355.46 -9.81 -41.54 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.18 Total: 3.93 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: -2.24 Total: -31.47 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.42 Total: -45.53 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.64 Total: -43.19 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 54.21 SS G_CDS: -0.51 Total: 53.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.72 -9.81 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096190019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.860 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds