Wall clock time and date at job start Fri Apr 10 2020 17:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46748 * 2 1 4 4 C 1.46498 * 119.99723 * 274.99675 * 3 2 1 5 5 C 1.50704 * 109.46932 * 275.00339 * 4 3 2 6 6 H 1.08001 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99936 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99810 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99791 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47370 * 89.99637 * 9 7 5 11 11 H 1.48500 * 109.46962 * 209.99332 * 9 7 5 12 12 H 1.48504 * 109.47378 * 329.99543 * 9 7 5 13 13 S 1.65599 * 120.00331 * 94.99805 * 3 2 1 14 14 O 1.42104 * 106.39790 * 336.45820 * 13 3 2 15 15 O 1.42094 * 106.40294 * 203.54018 * 13 3 2 16 16 C 1.76195 * 107.21878 * 89.99376 * 13 3 2 17 17 C 1.32568 * 119.99726 * 117.79436 * 16 13 3 18 18 C 1.47815 * 119.99802 * 17.60609 * 17 16 13 19 19 C 1.39543 * 120.13755 * 225.40516 * 18 17 16 20 20 C 1.37977 * 119.85404 * 179.72179 * 19 18 17 21 21 C 1.38348 * 120.13669 * 0.57027 * 20 19 18 22 22 C 1.50706 * 119.85024 * 179.69843 * 21 20 19 23 23 C 1.38340 * 120.29124 * 359.68732 * 21 20 19 24 24 C 1.37977 * 120.13948 * 0.03514 * 23 21 20 25 25 H 1.09000 * 109.47307 * 60.00812 * 1 2 3 26 26 H 1.09005 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47871 * 300.00438 * 1 2 3 28 28 H 1.08990 * 109.47434 * 239.99587 * 2 1 3 29 29 H 1.08998 * 109.46812 * 119.99058 * 2 1 3 30 30 H 1.09000 * 109.47187 * 34.99757 * 4 3 2 31 31 H 1.09002 * 109.47079 * 155.00185 * 4 3 2 32 32 H 0.96996 * 119.99576 * 180.02562 * 8 7 5 33 33 H 1.08003 * 120.00774 * 297.80085 * 16 13 3 34 34 H 1.08003 * 120.00355 * 197.60071 * 17 16 13 35 35 H 1.07996 * 120.07266 * 359.97438 * 19 18 17 36 36 H 1.07992 * 119.92867 * 180.27820 * 20 19 18 37 37 H 1.09000 * 109.47215 * 269.97827 * 22 21 20 38 38 H 1.08998 * 109.47256 * 29.98583 * 22 21 20 39 39 H 1.09001 * 109.46542 * 149.98251 * 22 21 20 40 40 H 1.07998 * 119.93231 * 180.02562 * 23 21 20 41 41 H 1.07999 * 120.06908 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7887 -1.8823 6 1 4.1723 1.1117 -1.3834 7 6 3.8529 2.3613 -3.0844 8 7 3.0280 3.1862 -3.6916 9 14 5.5099 1.9653 -3.8505 10 1 5.3750 0.7823 -4.7379 11 1 5.9788 3.1290 -4.6449 12 1 6.4934 1.6697 -2.7777 13 16 2.4120 2.1204 1.4286 14 8 1.6866 1.4416 2.4447 15 8 2.3054 3.5187 1.1997 16 6 4.1167 1.7943 1.7321 17 6 4.9823 2.7964 1.7952 18 6 4.4994 4.1780 2.0024 19 6 5.0081 5.2215 1.2280 20 6 4.5490 6.5081 1.4224 21 6 3.5950 6.7663 2.3905 22 6 3.1031 8.1751 2.6020 23 6 3.0906 5.7371 3.1652 24 6 3.5372 4.4453 2.9768 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3635 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 1.3617 1.8096 -1.9453 31 1 2.0920 3.1803 -1.0757 32 1 3.2798 3.5886 -4.5374 33 1 4.4567 0.7780 1.8665 34 1 6.0402 2.6034 1.6954 35 1 5.7565 5.0219 0.4755 36 1 4.9386 7.3158 0.8207 37 1 3.7283 8.6706 3.3447 38 1 3.1536 8.7226 1.6609 39 1 2.0716 8.1507 2.9533 40 1 2.3458 5.9452 3.9190 41 1 3.1429 3.6427 3.5825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096190019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:49 Heat of formation + Delta-G solvation = -42.989048 kcal Electronic energy + Delta-G solvation = -24309.100168 eV Core-core repulsion = 20895.006169 eV Total energy + Delta-G solvation = -3414.094000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.39173 -38.11440 -37.67420 -36.81782 -35.74936 -34.69016 -32.26891 -31.84057 -31.50669 -28.49846 -27.56908 -24.95777 -23.96520 -23.45258 -23.05482 -21.53855 -19.50235 -18.68336 -18.46748 -17.85303 -17.20757 -16.60952 -16.37288 -16.24830 -15.69779 -15.59396 -15.09685 -14.76008 -14.64123 -14.49388 -14.33106 -13.80928 -13.79366 -13.59518 -13.40937 -13.31348 -13.05189 -12.89573 -12.73779 -12.70710 -12.40943 -12.30604 -12.20235 -12.14516 -12.05342 -11.81901 -11.66757 -11.49011 -11.04593 -10.57237 -9.77102 -9.71558 -9.16909 -8.16533 -6.30346 -0.53561 -0.07120 0.57577 0.91803 1.41470 1.42049 1.52024 2.15184 2.42714 2.83847 2.93859 3.15016 3.50942 3.60692 3.87745 3.98792 4.02446 4.07770 4.31427 4.42407 4.47889 4.50683 4.53727 4.69784 4.76402 4.82883 4.88073 4.96072 4.99896 5.05531 5.15245 5.21829 5.26970 5.29423 5.40065 5.48571 5.53978 5.56779 5.70630 5.76043 5.95617 6.11136 6.14258 6.81044 7.39481 8.91404 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.011283 B = 0.006745 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.958874 B = 4149.994803 C = 5585.866680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 N -0.988 5.988 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.067 0.933 7 C 0.015 3.985 8 N -0.925 5.925 9 Si 0.954 3.046 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.262 1.262 13 S 2.675 3.325 14 O -1.000 7.000 15 O -0.968 6.968 16 C -0.757 4.757 17 C 0.065 3.935 18 C -0.116 4.116 19 C -0.093 4.093 20 C -0.136 4.136 21 C -0.078 4.078 22 C -0.111 4.111 23 C -0.132 4.132 24 C -0.080 4.080 25 H 0.048 0.952 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.021 0.979 31 H 0.023 0.977 32 H 0.265 0.735 33 H 0.177 0.823 34 H 0.161 0.839 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.142 0.858 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 2.253 11.577 12.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.827 5.827 4 C 0.139 3.861 5 C -0.585 4.585 6 H 0.085 0.915 7 C -0.185 4.185 8 N -0.565 5.565 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.186 1.186 13 S 2.769 3.231 14 O -0.990 6.990 15 O -0.958 6.958 16 C -0.865 4.865 17 C 0.045 3.955 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.154 4.154 21 C -0.078 4.078 22 C -0.168 4.168 23 C -0.150 4.150 24 C -0.099 4.099 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.195 0.805 34 H 0.178 0.822 35 H 0.149 0.851 36 H 0.160 0.840 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.159 0.841 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.456 2.804 11.930 12.499 hybrid contribution 1.293 -0.741 -1.103 1.854 sum 3.749 2.063 10.828 11.643 Atomic orbital electron populations 1.22195 0.95609 1.03416 1.01428 1.21351 0.95011 0.81394 1.03396 1.57315 1.78914 1.24142 1.22294 1.18731 0.96304 0.91143 0.79904 1.21848 1.02773 1.27686 1.06193 0.91473 1.25758 1.00677 0.94624 0.97453 1.70063 1.37947 1.31002 1.17492 0.85613 0.79918 0.77840 0.78727 1.19815 1.20986 1.18625 1.02030 0.75340 0.73288 0.72403 1.93481 1.72153 1.76173 1.57189 1.93676 1.86729 1.30154 1.85272 1.33619 1.25994 1.08353 1.18570 1.22085 1.01352 0.89892 0.82123 1.19264 0.99511 0.93552 0.99311 1.21323 0.99511 0.92658 0.97617 1.21206 0.98464 0.96775 0.98977 1.20368 0.95454 0.97266 0.94673 1.20864 1.01844 0.90752 1.03306 1.21071 1.00802 0.92001 1.01109 1.21147 0.94170 0.97815 0.96782 0.93239 0.88816 0.93382 0.89893 0.89609 0.96051 0.95853 0.92568 0.80500 0.82165 0.85109 0.83999 0.89191 0.90845 0.90830 0.84052 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.30 10.24 71.98 0.74 -4.56 16 2 C 0.11 3.98 6.06 86.38 0.52 4.51 16 3 N -0.99 -41.89 2.77 -519.85 -1.44 -43.33 16 4 C 0.26 13.42 5.43 85.63 0.47 13.88 16 5 C -0.55 -28.82 9.38 25.60 0.24 -28.58 16 6 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 7 C 0.01 0.79 5.46 84.66 0.46 1.25 16 8 N -0.93 -53.47 13.29 21.45 0.28 -53.18 16 9 Si 0.95 41.82 29.54 68.60 2.03 43.85 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 S 2.68 108.96 4.78 -56.49 -0.27 108.69 16 14 O -1.00 -41.61 16.99 -128.00 -2.17 -43.79 16 15 O -0.97 -43.96 11.62 -128.00 -1.49 -45.45 16 16 C -0.76 -26.32 10.10 66.67 0.67 -25.65 16 17 C 0.07 2.14 9.72 23.65 0.23 2.37 16 18 C -0.12 -4.05 3.92 -20.12 -0.08 -4.13 16 19 C -0.09 -3.12 9.79 22.52 0.22 -2.90 16 20 C -0.14 -4.10 9.68 22.23 0.22 -3.88 16 21 C -0.08 -2.20 5.89 -19.81 -0.12 -2.32 16 22 C -0.11 -2.22 10.01 71.24 0.71 -1.51 16 23 C -0.13 -4.03 9.68 22.23 0.22 -3.81 16 24 C -0.08 -2.75 6.51 22.52 0.15 -2.61 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 29 H 0.09 2.61 7.61 -2.39 -0.02 2.59 16 30 H 0.02 1.15 8.11 -2.39 -0.02 1.13 16 31 H 0.02 1.33 6.91 -2.39 -0.02 1.32 16 32 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.18 5.18 8.06 -2.91 -0.02 5.16 16 34 H 0.16 4.07 8.06 -2.91 -0.02 4.04 16 35 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 39 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 40 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 41 H 0.11 3.55 7.41 -2.91 -0.02 3.53 16 Total: -1.00 -68.31 355.46 2.59 -65.73 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 1.00 Total: 25.43 kcal Atomic # 6 Polarization: -62.59 SS G_CDS: 4.65 Total: -57.95 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -1.15 Total: -96.51 kcal Atomic # 8 Polarization: -85.57 SS G_CDS: -3.66 Total: -89.24 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 108.96 SS G_CDS: -0.27 Total: 108.69 kcal Total: -68.31 2.59 -65.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096190019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.738 kcal (2) G-P(sol) polarization free energy of solvation -68.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds