Wall clock time and date at job start Fri Apr 10 2020 18:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 119.99647 * 2 1 4 4 N 1.46502 * 109.47142 * 125.00388 * 3 2 1 5 5 C 1.35061 * 125.56586 * 90.02000 * 4 3 2 6 6 O 1.21298 * 127.29003 * 359.97438 * 5 4 3 7 7 C 1.49980 * 105.42898 * 180.02562 * 5 4 3 8 8 O 1.21308 * 127.28776 * 180.02562 * 7 5 4 9 9 N 1.35057 * 105.43555 * 359.97438 * 7 5 4 10 10 C 1.46502 * 125.57095 * 180.02562 * 9 7 5 11 11 C 1.50697 * 109.47217 * 90.02648 * 10 9 7 12 12 O 1.21280 * 119.99998 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99887 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00053 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47077 * 34.99783 * 14 13 11 16 16 C 1.53008 * 109.47016 * 275.00255 * 14 13 11 17 17 C 1.50695 * 109.47337 * 155.00261 * 14 13 11 18 18 H 1.07998 * 120.00418 * 5.62270 * 17 14 13 19 19 C 1.37879 * 120.00201 * 185.62926 * 17 14 13 20 20 N 1.31514 * 120.00393 * 197.18198 * 19 17 14 21 21 Si 1.86804 * 119.99786 * 17.45333 * 19 17 14 22 22 H 1.48502 * 109.47029 * 179.72709 * 21 19 17 23 23 H 1.48503 * 109.46948 * 299.72609 * 21 19 17 24 24 H 1.48492 * 109.47033 * 59.72641 * 21 19 17 25 25 C 1.34277 * 125.56663 * 270.33026 * 4 3 2 26 26 O 1.21483 * 124.30116 * 359.97438 * 25 4 3 27 27 H 1.08000 * 120.00432 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00174 * 180.02562 * 1 2 3 29 29 H 1.07993 * 120.00087 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47631 * 4.99995 * 3 2 1 31 31 H 1.09006 * 109.47424 * 244.99959 * 3 2 1 32 32 H 1.08996 * 109.47315 * 330.02389 * 10 9 7 33 33 H 1.09000 * 109.46974 * 210.02470 * 10 9 7 34 34 H 0.96996 * 120.00288 * 0.02562 * 13 11 10 35 35 H 1.09002 * 109.47065 * 186.34089 * 16 14 13 36 36 H 1.09000 * 109.46665 * 306.33574 * 16 14 13 37 37 H 1.08994 * 109.46957 * 66.33318 * 16 14 13 38 38 H 0.97001 * 119.99221 * 355.17115 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.2721 0.8968 1.1077 6 8 4.8673 0.4155 0.1667 7 6 4.7997 1.1332 2.4916 8 8 5.9124 0.8849 2.9062 9 7 3.7745 1.6822 3.1783 10 6 3.8125 2.0903 4.5848 11 6 4.2592 3.5264 4.6793 12 8 4.5197 4.1481 3.6711 13 7 4.3682 4.1203 5.8842 14 6 4.8019 5.5166 5.9761 15 1 4.4136 6.0745 5.1241 16 6 6.3308 5.5771 5.9714 17 6 4.2792 6.1220 7.2533 18 1 3.7615 5.5038 7.9717 19 6 4.4617 7.4654 7.5047 20 7 4.3221 7.9306 8.7269 21 14 4.8999 8.6259 6.1080 22 1 5.0339 10.0074 6.6359 23 1 6.1856 8.2023 5.4974 24 1 3.8285 8.5904 5.0805 25 6 2.7129 1.7878 2.3628 26 8 1.6364 2.2416 2.6958 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 4.5122 1.4556 5.1285 33 1 2.8178 1.9899 5.0192 34 1 4.1595 3.6233 6.6906 35 1 6.6544 6.6021 6.1526 36 1 6.7224 4.9286 6.7551 37 1 6.7045 5.2438 5.0034 38 1 4.0227 7.3429 9.4382 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263712637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:17 Heat of formation + Delta-G solvation = -64.342922 kcal Electronic energy + Delta-G solvation = -25549.696997 eV Core-core repulsion = 21588.383810 eV Total energy + Delta-G solvation = -3961.313188 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.59786 -39.64843 -39.43006 -38.72433 -36.71883 -36.22043 -35.09435 -33.91731 -32.57957 -30.62617 -29.13072 -26.75573 -25.85437 -24.87858 -22.56325 -22.34614 -20.99718 -20.48378 -19.80555 -18.44139 -18.08106 -17.62318 -17.37387 -16.80877 -16.47140 -16.31339 -15.68077 -15.28941 -15.03564 -14.77298 -14.70523 -14.58562 -13.88841 -13.78383 -13.17391 -13.00586 -12.75975 -12.73195 -12.60079 -12.16981 -11.95535 -11.78957 -11.45866 -11.29250 -10.74735 -10.53423 -10.45063 -10.35704 -10.09338 -10.00047 -9.84930 -9.35439 -9.15028 -8.39307 -8.35288 -6.63976 -4.28023 0.05955 1.26326 1.64155 2.04215 2.28770 2.33806 2.91414 3.35107 3.41701 3.54573 3.59331 3.75050 4.21648 4.35524 4.37326 4.60754 4.78402 4.81953 4.92767 4.98064 5.11653 5.13222 5.17072 5.32683 5.43418 6.07478 6.14214 6.31026 6.31894 6.41412 6.47544 6.59953 6.86706 6.90174 7.14655 7.26293 7.29188 7.54013 8.16303 8.26909 8.56547 8.78024 9.40936 10.77147 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.003439 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.296923 B = 8140.913986 C = 8587.691697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.190 4.190 3 C 0.149 3.851 4 N -0.569 5.569 5 C 0.514 3.486 6 O -0.414 6.414 7 C 0.513 3.487 8 O -0.407 6.407 9 N -0.555 5.555 10 C 0.099 3.901 11 C 0.488 3.512 12 O -0.547 6.547 13 N -0.692 5.692 14 C 0.242 3.758 15 H 0.042 0.958 16 C -0.161 4.161 17 C -0.619 4.619 18 H 0.063 0.937 19 C 0.040 3.960 20 N -0.896 5.896 21 Si 1.041 2.959 22 H -0.282 1.282 23 H -0.271 1.271 24 H -0.280 1.280 25 C 0.716 3.284 26 O -0.480 6.480 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.396 0.604 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.029 0.971 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 -17.290 -14.220 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.209 4.209 3 C 0.030 3.970 4 N -0.318 5.318 5 C 0.295 3.705 6 O -0.279 6.279 7 C 0.293 3.707 8 O -0.271 6.271 9 N -0.303 5.303 10 C -0.025 4.025 11 C 0.271 3.729 12 O -0.425 6.425 13 N -0.341 5.341 14 C 0.139 3.861 15 H 0.060 0.940 16 C -0.220 4.220 17 C -0.657 4.657 18 H 0.081 0.919 19 C -0.167 4.167 20 N -0.528 5.528 21 Si 0.869 3.131 22 H -0.208 1.208 23 H -0.198 1.198 24 H -0.206 1.206 25 C 0.419 3.581 26 O -0.348 6.348 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.230 0.770 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.783 -15.360 -15.343 22.231 hybrid contribution -0.569 -1.848 0.892 2.130 sum -5.353 -17.208 -14.451 23.100 Atomic orbital electron populations 1.24020 0.95549 1.02783 0.96459 1.23108 0.96456 0.98048 1.03324 1.20901 0.91564 0.97805 0.86720 1.46726 1.13987 1.58617 1.12497 1.20862 0.81902 0.77950 0.89782 1.90832 1.62275 1.36665 1.38100 1.20808 0.84944 0.77712 0.87233 1.90853 1.17463 1.45159 1.73625 1.46116 1.12977 1.57871 1.13341 1.21720 1.06762 0.96203 0.77840 1.20506 0.79132 0.88175 0.85133 1.90689 1.51020 1.65289 1.35548 1.46216 1.65903 1.15442 1.06496 1.19070 0.91200 0.77189 0.98597 0.94042 1.22506 0.98613 1.01982 0.98856 1.22054 1.43023 0.96578 1.04075 0.91884 1.25679 0.94030 0.96731 1.00252 1.70885 1.41226 1.40705 1.00026 0.84088 0.77668 0.76293 0.75083 1.20787 1.19752 1.20597 1.15799 0.84201 0.77838 0.80230 1.91032 1.22772 1.44511 1.76453 0.87720 0.87653 0.86645 0.87394 0.87187 0.85319 0.85112 0.77021 0.91762 0.93551 0.95183 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 14.32 29.02 0.42 -0.48 16 2 C -0.19 -1.32 9.85 -36.03 -0.35 -1.67 16 3 C 0.15 1.17 6.29 -5.19 -0.03 1.14 16 4 N -0.57 -6.17 2.64 -122.51 -0.32 -6.49 16 5 C 0.51 6.19 8.31 -11.21 -0.09 6.10 16 6 O -0.41 -5.50 17.88 5.54 0.10 -5.40 16 7 C 0.51 6.87 8.31 -11.21 -0.09 6.78 16 8 O -0.41 -6.29 17.88 5.53 0.10 -6.19 16 9 N -0.56 -7.23 2.15 -122.51 -0.26 -7.50 16 10 C 0.10 1.21 6.34 -5.19 -0.03 1.18 16 11 C 0.49 8.71 7.86 -10.99 -0.09 8.63 16 12 O -0.55 -11.93 16.09 5.56 0.09 -11.84 16 13 N -0.69 -13.08 5.07 -54.93 -0.28 -13.36 16 14 C 0.24 5.67 2.14 -69.08 -0.15 5.53 16 15 H 0.04 1.06 6.23 -51.93 -0.32 0.74 16 16 C -0.16 -3.59 9.16 37.16 0.34 -3.25 16 17 C -0.62 -16.33 9.00 -34.44 -0.31 -16.64 16 18 H 0.06 1.72 7.96 -52.49 -0.42 1.30 16 19 C 0.04 1.11 5.29 -17.82 -0.09 1.01 16 20 N -0.90 -26.25 13.70 55.43 0.76 -25.50 16 21 Si 1.04 24.85 26.29 -169.99 -4.47 20.38 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.08 5.76 56.52 0.33 -5.75 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.72 9.26 8.32 -87.81 -0.73 8.53 16 26 O -0.48 -7.15 17.27 5.38 0.09 -7.06 16 27 H 0.10 0.59 7.84 -52.49 -0.41 0.18 16 28 H 0.11 0.50 8.06 -52.49 -0.42 0.07 16 29 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.11 0.79 7.64 -51.93 -0.40 0.40 16 31 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.13 1.19 8.10 -51.93 -0.42 0.77 16 33 H 0.13 1.28 7.97 -51.93 -0.41 0.87 16 34 H 0.40 6.32 8.53 -40.82 -0.35 5.97 16 35 H 0.06 1.47 4.88 -51.93 -0.25 1.22 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.27 7.79 8.73 -40.82 -0.36 7.43 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -34.23 342.51 -4.58 -38.81 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -4.32 Total: 2.13 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: -1.22 Total: 16.85 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.11 Total: -52.84 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: 0.38 Total: -30.49 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -4.47 Total: 20.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.23 -4.58 -38.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263712637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.531 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds