Wall clock time and date at job start Fri Apr 10 2020 18:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 119.99647 * 2 1 4 4 N 1.46502 * 109.47142 * 125.00388 * 3 2 1 5 5 C 1.35061 * 125.56586 * 90.02000 * 4 3 2 6 6 O 1.21298 * 127.29003 * 359.97438 * 5 4 3 7 7 C 1.49980 * 105.42898 * 180.02562 * 5 4 3 8 8 O 1.21308 * 127.28776 * 180.02562 * 7 5 4 9 9 N 1.35057 * 105.43555 * 359.97438 * 7 5 4 10 10 C 1.46502 * 125.57095 * 180.02562 * 9 7 5 11 11 C 1.50697 * 109.47217 * 90.02648 * 10 9 7 12 12 O 1.21280 * 119.99998 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99887 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00053 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47077 * 34.99783 * 14 13 11 16 16 C 1.53008 * 109.47016 * 275.00255 * 14 13 11 17 17 C 1.50695 * 109.47337 * 155.00261 * 14 13 11 18 18 H 1.07998 * 120.00418 * 5.62270 * 17 14 13 19 19 C 1.37879 * 120.00201 * 185.62926 * 17 14 13 20 20 N 1.31514 * 120.00393 * 197.18198 * 19 17 14 21 21 Si 1.86804 * 119.99786 * 17.45333 * 19 17 14 22 22 H 1.48502 * 109.47029 * 179.72709 * 21 19 17 23 23 H 1.48503 * 109.46948 * 299.72609 * 21 19 17 24 24 H 1.48492 * 109.47033 * 59.72641 * 21 19 17 25 25 C 1.34277 * 125.56663 * 270.33026 * 4 3 2 26 26 O 1.21483 * 124.30116 * 359.97438 * 25 4 3 27 27 H 1.08000 * 120.00432 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00174 * 180.02562 * 1 2 3 29 29 H 1.07993 * 120.00087 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47631 * 4.99995 * 3 2 1 31 31 H 1.09006 * 109.47424 * 244.99959 * 3 2 1 32 32 H 1.08996 * 109.47315 * 330.02389 * 10 9 7 33 33 H 1.09000 * 109.46974 * 210.02470 * 10 9 7 34 34 H 0.96996 * 120.00288 * 0.02562 * 13 11 10 35 35 H 1.09002 * 109.47065 * 186.34089 * 16 14 13 36 36 H 1.09000 * 109.46665 * 306.33574 * 16 14 13 37 37 H 1.08994 * 109.46957 * 66.33318 * 16 14 13 38 38 H 0.97001 * 119.99221 * 355.17115 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.2721 0.8968 1.1077 6 8 4.8673 0.4155 0.1667 7 6 4.7997 1.1332 2.4916 8 8 5.9124 0.8849 2.9062 9 7 3.7745 1.6822 3.1783 10 6 3.8125 2.0903 4.5848 11 6 4.2592 3.5264 4.6793 12 8 4.5197 4.1481 3.6711 13 7 4.3682 4.1203 5.8842 14 6 4.8019 5.5166 5.9761 15 1 4.4136 6.0745 5.1241 16 6 6.3308 5.5771 5.9714 17 6 4.2792 6.1220 7.2533 18 1 3.7615 5.5038 7.9717 19 6 4.4617 7.4654 7.5047 20 7 4.3221 7.9306 8.7269 21 14 4.8999 8.6259 6.1080 22 1 5.0339 10.0074 6.6359 23 1 6.1856 8.2023 5.4974 24 1 3.8285 8.5904 5.0805 25 6 2.7129 1.7878 2.3628 26 8 1.6364 2.2416 2.6958 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 4.5122 1.4556 5.1285 33 1 2.8178 1.9899 5.0192 34 1 4.1595 3.6233 6.6906 35 1 6.6544 6.6021 6.1526 36 1 6.7224 4.9286 6.7551 37 1 6.7045 5.2438 5.0034 38 1 4.0227 7.3429 9.4382 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263712637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:16 Heat of formation + Delta-G solvation = -89.552340 kcal Electronic energy + Delta-G solvation = -25550.790160 eV Core-core repulsion = 21588.383810 eV Total energy + Delta-G solvation = -3962.406350 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.59920 -40.93342 -40.50934 -39.93630 -37.75268 -37.22290 -36.72127 -34.71269 -34.49407 -32.12355 -30.33392 -27.66877 -26.87410 -26.82389 -23.77612 -23.33718 -22.43542 -21.41484 -21.05889 -20.02054 -19.09922 -19.02219 -18.39982 -17.87280 -17.81790 -17.39522 -16.79264 -16.49224 -16.18949 -16.03104 -15.82666 -15.50922 -15.43381 -14.77536 -14.63044 -14.54155 -14.33962 -14.04109 -13.74454 -13.51050 -13.32681 -13.18033 -12.51948 -12.44610 -12.35910 -12.01483 -11.92198 -11.69365 -11.45047 -11.20403 -11.17071 -10.76539 -10.52327 -10.48117 -10.02200 -8.80888 -6.45384 -0.96906 0.42576 0.68818 1.25649 1.29032 1.44331 1.47737 1.49332 1.53460 1.68253 2.33560 2.40392 2.62770 3.00248 3.37951 3.62698 3.79434 3.90200 3.95090 4.09699 4.14596 4.20846 4.47212 4.48539 4.62567 4.69454 4.75909 4.97187 5.05237 5.29394 5.40601 5.41547 5.53473 5.60395 5.61685 5.68914 5.90165 6.00440 6.28347 6.51543 6.68737 7.21846 7.32275 8.59562 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.003439 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.296923 B = 8140.913986 C = 8587.691697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.203 4.203 3 C 0.142 3.858 4 N -0.560 5.560 5 C 0.525 3.475 6 O -0.425 6.425 7 C 0.515 3.485 8 O -0.429 6.429 9 N -0.557 5.557 10 C 0.106 3.894 11 C 0.484 3.516 12 O -0.588 6.588 13 N -0.692 5.692 14 C 0.245 3.755 15 H 0.021 0.979 16 C -0.154 4.154 17 C -0.613 4.613 18 H 0.047 0.953 19 C -0.004 4.004 20 N -0.927 5.927 21 Si 1.070 2.930 22 H -0.282 1.282 23 H -0.249 1.249 24 H -0.275 1.275 25 C 0.719 3.281 26 O -0.499 6.499 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.411 0.589 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.035 0.965 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -18.709 -15.406 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.222 4.222 3 C 0.024 3.976 4 N -0.308 5.308 5 C 0.305 3.695 6 O -0.291 6.291 7 C 0.296 3.704 8 O -0.295 6.295 9 N -0.304 5.304 10 C -0.017 4.017 11 C 0.270 3.730 12 O -0.470 6.470 13 N -0.342 5.342 14 C 0.140 3.860 15 H 0.039 0.961 16 C -0.212 4.212 17 C -0.651 4.651 18 H 0.065 0.935 19 C -0.205 4.205 20 N -0.562 5.562 21 Si 0.893 3.107 22 H -0.207 1.207 23 H -0.174 1.174 24 H -0.201 1.201 25 C 0.422 3.578 26 O -0.368 6.368 27 H 0.126 0.874 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.142 0.858 32 H 0.182 0.818 33 H 0.179 0.821 34 H 0.247 0.753 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.168 -16.828 -16.535 24.152 hybrid contribution -0.544 -1.471 1.248 2.004 sum -5.712 -18.299 -15.287 24.519 Atomic orbital electron populations 1.24213 0.95316 1.03666 0.94719 1.23062 0.96753 0.97536 1.04834 1.21222 0.91517 0.98729 0.86148 1.46797 1.13829 1.57679 1.12473 1.20580 0.82112 0.77723 0.89050 1.90834 1.62587 1.37353 1.38313 1.20998 0.84586 0.77075 0.87717 1.90841 1.18283 1.46159 1.74208 1.46179 1.12947 1.57568 1.13737 1.21862 1.09237 0.92494 0.78100 1.21380 0.77725 0.90141 0.83777 1.90669 1.52616 1.66915 1.36762 1.45989 1.66214 1.14005 1.07981 1.18739 0.91826 0.79464 0.95959 0.96088 1.22381 0.97561 1.01745 0.99542 1.22240 1.41716 0.96398 1.04708 0.93489 1.26738 0.94000 0.98684 1.01096 1.70980 1.43669 1.40819 1.00706 0.83707 0.78744 0.74966 0.73264 1.20749 1.17383 1.20083 1.15881 0.83845 0.77425 0.80635 1.91023 1.23475 1.45439 1.76892 0.87395 0.86256 0.86477 0.86878 0.85791 0.81752 0.82098 0.75274 0.92637 0.92523 0.94574 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 14.32 67.78 0.97 -0.41 16 2 C -0.20 -2.42 9.85 25.65 0.25 -2.17 16 3 C 0.14 1.98 6.29 85.63 0.54 2.52 16 4 N -0.56 -11.18 2.64 -778.31 -2.06 -13.24 16 5 C 0.52 11.86 8.31 87.39 0.73 12.59 16 6 O -0.43 -10.73 17.88 -3.09 -0.06 -10.78 16 7 C 0.52 12.97 8.31 87.39 0.73 13.69 16 8 O -0.43 -12.65 17.88 -3.12 -0.06 -12.71 16 9 N -0.56 -13.33 2.15 -778.32 -1.67 -15.01 16 10 C 0.11 2.30 6.34 85.63 0.54 2.84 16 11 C 0.48 16.41 7.86 87.66 0.69 17.10 16 12 O -0.59 -25.03 16.09 -3.03 -0.05 -25.07 16 13 N -0.69 -25.06 5.07 -446.10 -2.26 -27.32 16 14 C 0.24 11.23 2.14 44.25 0.09 11.32 16 15 H 0.02 1.07 6.23 -2.39 -0.01 1.06 16 16 C -0.15 -6.62 9.16 71.98 0.66 -5.96 16 17 C -0.61 -32.19 9.00 25.60 0.23 -31.95 16 18 H 0.05 2.57 7.96 -2.91 -0.02 2.55 16 19 C 0.00 -0.22 5.29 84.66 0.45 0.23 16 20 N -0.93 -54.95 13.70 21.45 0.29 -54.66 16 21 Si 1.07 49.72 26.29 68.60 1.80 51.52 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.25 -10.61 5.76 99.48 0.57 -10.03 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C 0.72 17.25 8.32 179.37 1.49 18.75 16 26 O -0.50 -13.96 17.27 -3.66 -0.06 -14.02 16 27 H 0.11 0.98 7.84 -2.91 -0.02 0.96 16 28 H 0.12 0.83 8.06 -2.91 -0.02 0.81 16 29 H 0.12 1.36 8.06 -2.91 -0.02 1.33 16 30 H 0.11 1.48 7.64 -2.39 -0.02 1.46 16 31 H 0.12 1.37 8.10 -2.38 -0.02 1.35 16 32 H 0.17 2.43 8.10 -2.39 -0.02 2.41 16 33 H 0.16 2.58 7.97 -2.39 -0.02 2.56 16 34 H 0.41 12.31 8.53 -92.71 -0.79 11.52 16 35 H 0.05 2.46 4.88 -2.39 -0.01 2.45 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.26 15.35 8.73 -92.71 -0.81 14.54 16 Total: -1.00 -73.53 342.51 3.41 -70.12 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.15 Total: 12.63 kcal Atomic # 6 Polarization: 31.16 SS G_CDS: 7.37 Total: 38.53 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -5.70 Total: -110.22 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -0.22 Total: -62.59 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 1.80 Total: 51.52 kcal Total: -73.53 3.41 -70.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263712637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.430 kcal (2) G-P(sol) polarization free energy of solvation -73.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds