Wall clock time and date at job start Fri Apr 10 2020 18:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34780 * 117.00076 * 2 1 4 4 O 1.21496 * 120.00238 * 359.97438 * 3 2 1 5 5 C 1.47368 * 119.99765 * 179.97438 * 3 2 1 6 6 C 1.36747 * 126.84096 * 180.02562 * 5 3 2 7 7 C 1.42137 * 103.78642 * 180.02562 * 6 5 3 8 8 C 1.48323 * 126.83952 * 179.97438 * 7 6 5 9 9 O 1.21496 * 119.99926 * 6.32358 * 8 7 6 10 10 N 1.34776 * 120.00211 * 186.32612 * 8 7 6 11 11 C 1.46972 * 120.59064 * 6.22800 * 10 8 7 12 12 C 1.53811 * 108.39357 * 124.76217 * 11 10 8 13 13 N 1.46964 * 108.58157 * 49.63982 * 12 11 10 14 14 C 1.36933 * 120.59417 * 124.67081 * 13 12 11 15 15 H 1.08008 * 119.99620 * 224.55151 * 14 13 12 16 16 C 1.38810 * 120.00273 * 44.54593 * 14 13 12 17 17 N 1.31619 * 120.00017 * 11.80329 * 16 14 13 18 18 Si 1.86800 * 119.99880 * 191.79626 * 16 14 13 19 19 H 1.48499 * 109.47186 * 90.00356 * 18 16 14 20 20 H 1.48500 * 109.47015 * 210.00479 * 18 16 14 21 21 H 1.48497 * 109.47198 * 329.99991 * 18 16 14 22 22 C 1.46968 * 118.80720 * 304.64095 * 13 12 11 23 23 C 1.46964 * 120.59766 * 186.51326 * 10 8 7 24 24 N 1.30955 * 106.32539 * 359.97438 * 7 6 5 25 25 O 1.20873 * 111.82808 * 0.02562 * 24 7 6 26 26 H 1.09005 * 109.46940 * 59.99944 * 1 2 3 27 27 H 1.08993 * 109.47605 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46920 * 300.00393 * 1 2 3 29 29 H 1.07998 * 128.10865 * 359.95281 * 6 5 3 30 30 H 1.09001 * 109.60438 * 244.54159 * 11 10 8 31 31 H 1.08996 * 109.60913 * 5.05425 * 11 10 8 32 32 H 1.09000 * 109.74225 * 289.84111 * 12 11 10 33 33 H 1.09001 * 109.52702 * 169.30354 * 12 11 10 34 34 H 0.96996 * 119.99713 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.60957 * 295.48214 * 22 13 12 36 36 H 1.09001 * 109.74738 * 175.06018 * 22 13 12 37 37 H 1.09002 * 109.60501 * 354.94003 * 23 10 8 38 38 H 1.08994 * 109.61056 * 115.45587 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4023 2.2199 -0.0005 5 6 3.5356 1.2779 0.0006 6 6 4.2972 2.4137 0.0011 7 6 5.6324 1.9262 0.0009 8 6 6.8748 2.7363 0.0008 9 8 6.8126 3.9441 0.1168 10 7 8.0729 2.1326 -0.1281 11 6 8.1585 0.6918 -0.4053 12 6 9.0046 0.4910 -1.6739 13 7 10.2489 1.2604 -1.5336 14 6 11.4661 0.6469 -1.6645 15 1 12.2570 0.8606 -0.9606 16 6 11.6836 -0.2495 -2.7018 17 7 10.8159 -0.3386 -3.6874 18 14 13.2079 -1.3293 -2.6988 19 1 12.9119 -2.6016 -1.9926 20 1 13.6101 -1.6218 -4.0981 21 1 14.3136 -0.6229 -2.0035 22 6 10.1633 2.7001 -1.2509 23 6 9.3172 2.9019 0.0123 24 7 5.5471 0.6194 0.0008 25 8 4.3982 0.2440 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.9626 3.4405 0.0006 30 1 8.6303 0.1848 0.4364 31 1 7.1579 0.2897 -0.5636 32 1 8.4522 0.8443 -2.5447 33 1 9.2399 -0.5668 -1.7914 34 1 10.9682 -0.9647 -4.4124 35 1 9.6934 3.2106 -2.0915 36 1 11.1629 3.1039 -1.0900 37 1 9.0819 3.9597 0.1297 38 1 9.8695 2.5486 0.8829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330693498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:53 Heat of formation + Delta-G solvation = -3.423596 kcal Electronic energy + Delta-G solvation = -25380.738432 eV Core-core repulsion = 21422.066905 eV Total energy + Delta-G solvation = -3958.671527 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.43182 -40.76511 -39.71337 -37.08318 -36.89324 -34.45340 -33.89172 -32.68959 -31.26659 -30.31469 -28.39872 -27.28017 -25.17224 -24.64465 -23.53368 -22.80680 -22.28509 -20.65328 -19.63364 -18.31007 -18.21971 -17.59211 -17.38667 -16.70393 -16.47872 -15.79302 -15.57535 -14.91418 -14.76305 -14.35570 -13.99577 -13.79023 -13.75318 -13.59997 -13.45127 -13.34618 -12.73623 -12.56709 -12.30426 -11.59668 -11.44942 -11.31534 -11.10917 -10.88493 -10.82074 -10.72283 -10.54132 -10.36106 -10.28014 -10.17437 -10.01613 -9.66397 -8.60407 -8.41952 -6.54550 -5.89463 -3.54524 0.21778 1.12565 1.74349 2.21566 2.59278 3.04403 3.16360 3.30508 3.37845 3.39102 3.69511 4.24230 4.40069 4.47644 4.58117 4.67697 4.77019 4.80037 5.11447 5.27295 5.33668 5.42713 5.67741 5.76749 5.80663 5.87821 6.07874 6.14927 6.31535 6.38009 6.74884 6.84376 7.00909 7.06972 7.25257 7.54248 7.69350 7.74234 8.19114 8.44223 9.08776 9.65258 10.33758 11.15274 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.003197 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.321806 B = 8757.081484 C = 9707.157008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.342 6.342 3 C 0.562 3.438 4 O -0.476 6.476 5 C -0.080 4.080 6 C -0.082 4.082 7 C -0.020 4.020 8 C 0.587 3.413 9 O -0.536 6.536 10 N -0.575 5.575 11 C 0.060 3.940 12 C 0.165 3.835 13 N -0.587 5.587 14 C -0.272 4.272 15 H 0.060 0.940 16 C 0.021 3.979 17 N -0.891 5.891 18 Si 0.903 3.097 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.276 1.276 22 C 0.132 3.868 23 C 0.095 3.905 24 N -0.289 5.289 25 O 0.152 5.848 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.197 0.803 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.026 0.974 33 H 0.080 0.920 34 H 0.257 0.743 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.993 0.259 7.993 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.257 6.257 3 C 0.404 3.596 4 O -0.362 6.362 5 C -0.144 4.144 6 C -0.104 4.104 7 C -0.177 4.177 8 C 0.372 3.628 9 O -0.414 6.414 10 N -0.305 5.305 11 C -0.064 4.064 12 C 0.039 3.961 13 N -0.310 5.310 14 C -0.402 4.402 15 H 0.078 0.922 16 C -0.180 4.180 17 N -0.532 5.532 18 Si 0.732 3.268 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.201 1.201 22 C 0.005 3.995 23 C -0.028 4.028 24 N 0.013 4.987 25 O 0.069 5.931 26 H 0.088 0.912 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.214 0.786 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.246 0.175 7.876 18.960 hybrid contribution 0.207 -0.052 -0.197 0.290 sum -17.039 0.123 7.679 18.690 Atomic orbital electron populations 1.23445 0.74626 1.04545 1.03101 1.86639 1.24450 1.31025 1.83625 1.18989 0.84760 0.82466 0.73411 1.90960 1.64106 1.35964 1.45193 1.22658 0.90430 0.87945 1.13324 1.22873 0.89393 1.00869 0.97255 1.23684 0.96718 0.89810 1.07506 1.16873 0.81379 0.86121 0.78448 1.90768 1.85937 1.12639 1.52007 1.47965 1.04911 1.11131 1.66537 1.23427 1.03026 0.78414 1.01574 1.21124 0.86261 0.97863 0.90893 1.43805 1.02146 1.01472 1.83537 1.19015 0.90723 1.22994 1.07471 0.92207 1.25527 0.97408 1.00750 0.94352 1.69999 1.36724 1.36759 1.09703 0.86306 0.82870 0.80657 0.76948 1.21071 1.21556 1.20106 1.21347 0.97537 0.87730 0.92900 1.22404 0.83672 0.95992 1.00772 1.74201 0.97485 1.14268 1.12697 1.85112 1.10469 1.32941 1.64604 0.91246 0.87277 0.91304 0.78607 0.91357 0.88087 0.95549 0.90132 0.93341 0.95725 0.91116 0.89634 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.57 101.05 1.07 1.26 16 2 O -0.34 -3.04 10.58 -41.51 -0.44 -3.48 16 3 C 0.56 5.92 7.96 34.45 0.27 6.19 16 4 O -0.48 -5.73 16.70 -19.26 -0.32 -6.05 16 5 C -0.08 -0.92 7.36 -36.41 -0.27 -1.19 16 6 C -0.08 -1.02 10.78 -38.63 -0.42 -1.44 16 7 C -0.02 -0.31 6.88 -82.60 -0.57 -0.87 16 8 C 0.59 10.52 7.71 -12.11 -0.09 10.42 16 9 O -0.54 -10.47 16.37 5.37 0.09 -10.38 16 10 N -0.57 -10.68 2.94 -173.15 -0.51 -11.19 16 11 C 0.06 1.12 6.37 -3.36 -0.02 1.10 16 12 C 0.17 3.80 5.50 -3.37 -0.02 3.78 16 13 N -0.59 -14.37 2.85 -171.76 -0.49 -14.86 16 14 C -0.27 -7.24 9.39 -15.06 -0.14 -7.38 16 15 H 0.06 1.57 7.86 -52.48 -0.41 1.16 16 16 C 0.02 0.58 4.99 -17.43 -0.09 0.49 16 17 N -0.89 -25.32 12.14 55.49 0.67 -24.65 16 18 Si 0.90 20.96 29.57 -169.99 -5.03 15.93 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.13 2.78 6.67 -3.60 -0.02 2.75 16 23 C 0.09 1.73 6.60 -3.60 -0.02 1.70 16 24 N -0.29 -4.22 8.58 33.36 0.29 -3.93 16 25 O 0.15 1.90 11.21 15.53 0.17 2.07 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.20 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.10 1.77 4.08 -61.26 -0.25 1.52 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 2.00 7.09 -51.93 -0.37 1.63 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.42 7.94 -51.93 -0.41 1.01 16 37 H 0.09 1.48 6.99 -51.93 -0.36 1.12 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -31.43 330.33 -5.23 -36.66 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.32 Total: -1.92 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: -0.32 Total: 16.82 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.04 Total: -54.63 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.50 Total: -17.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.43 -5.23 -36.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330693498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.233 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds