Wall clock time and date at job start Fri Apr 10 2020 18:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34780 * 117.00076 * 2 1 4 4 O 1.21496 * 120.00238 * 359.97438 * 3 2 1 5 5 C 1.47368 * 119.99765 * 179.97438 * 3 2 1 6 6 C 1.36747 * 126.84096 * 180.02562 * 5 3 2 7 7 C 1.42137 * 103.78642 * 180.02562 * 6 5 3 8 8 C 1.48323 * 126.83952 * 179.97438 * 7 6 5 9 9 O 1.21496 * 119.99926 * 6.32358 * 8 7 6 10 10 N 1.34776 * 120.00211 * 186.32612 * 8 7 6 11 11 C 1.46972 * 120.59064 * 6.22800 * 10 8 7 12 12 C 1.53811 * 108.39357 * 124.76217 * 11 10 8 13 13 N 1.46964 * 108.58157 * 49.63982 * 12 11 10 14 14 C 1.36933 * 120.59417 * 124.67081 * 13 12 11 15 15 H 1.08008 * 119.99620 * 224.55151 * 14 13 12 16 16 C 1.38810 * 120.00273 * 44.54593 * 14 13 12 17 17 N 1.31619 * 120.00017 * 11.80329 * 16 14 13 18 18 Si 1.86800 * 119.99880 * 191.79626 * 16 14 13 19 19 H 1.48499 * 109.47186 * 90.00356 * 18 16 14 20 20 H 1.48500 * 109.47015 * 210.00479 * 18 16 14 21 21 H 1.48497 * 109.47198 * 329.99991 * 18 16 14 22 22 C 1.46968 * 118.80720 * 304.64095 * 13 12 11 23 23 C 1.46964 * 120.59766 * 186.51326 * 10 8 7 24 24 N 1.30955 * 106.32539 * 359.97438 * 7 6 5 25 25 O 1.20873 * 111.82808 * 0.02562 * 24 7 6 26 26 H 1.09005 * 109.46940 * 59.99944 * 1 2 3 27 27 H 1.08993 * 109.47605 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46920 * 300.00393 * 1 2 3 29 29 H 1.07998 * 128.10865 * 359.95281 * 6 5 3 30 30 H 1.09001 * 109.60438 * 244.54159 * 11 10 8 31 31 H 1.08996 * 109.60913 * 5.05425 * 11 10 8 32 32 H 1.09000 * 109.74225 * 289.84111 * 12 11 10 33 33 H 1.09001 * 109.52702 * 169.30354 * 12 11 10 34 34 H 0.96996 * 119.99713 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.60957 * 295.48214 * 22 13 12 36 36 H 1.09001 * 109.74738 * 175.06018 * 22 13 12 37 37 H 1.09002 * 109.60501 * 354.94003 * 23 10 8 38 38 H 1.08994 * 109.61056 * 115.45587 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4023 2.2199 -0.0005 5 6 3.5356 1.2779 0.0006 6 6 4.2972 2.4137 0.0011 7 6 5.6324 1.9262 0.0009 8 6 6.8748 2.7363 0.0008 9 8 6.8126 3.9441 0.1168 10 7 8.0729 2.1326 -0.1281 11 6 8.1585 0.6918 -0.4053 12 6 9.0046 0.4910 -1.6739 13 7 10.2489 1.2604 -1.5336 14 6 11.4661 0.6469 -1.6645 15 1 12.2570 0.8606 -0.9606 16 6 11.6836 -0.2495 -2.7018 17 7 10.8159 -0.3386 -3.6874 18 14 13.2079 -1.3293 -2.6988 19 1 12.9119 -2.6016 -1.9926 20 1 13.6101 -1.6218 -4.0981 21 1 14.3136 -0.6229 -2.0035 22 6 10.1633 2.7001 -1.2509 23 6 9.3172 2.9019 0.0123 24 7 5.5471 0.6194 0.0008 25 8 4.3982 0.2440 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.9626 3.4405 0.0006 30 1 8.6303 0.1848 0.4364 31 1 7.1579 0.2897 -0.5636 32 1 8.4522 0.8443 -2.5447 33 1 9.2399 -0.5668 -1.7914 34 1 10.9682 -0.9647 -4.4124 35 1 9.6934 3.2106 -2.0915 36 1 11.1629 3.1039 -1.0900 37 1 9.0819 3.9597 0.1297 38 1 9.8695 2.5486 0.8829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330693498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:53 Heat of formation + Delta-G solvation = -23.139879 kcal Electronic energy + Delta-G solvation = -25381.593395 eV Core-core repulsion = 21422.066905 eV Total energy + Delta-G solvation = -3959.526490 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.53490 -41.54953 -41.18735 -38.57069 -37.82578 -35.87511 -35.34894 -33.84609 -33.06946 -31.98678 -29.02901 -28.93447 -26.61487 -25.59501 -25.18859 -24.35178 -23.51092 -22.04376 -20.87556 -19.67435 -19.35581 -18.69666 -18.37219 -18.11261 -17.44436 -17.25390 -16.88791 -16.62728 -16.37571 -15.56123 -15.31445 -15.30625 -15.11071 -14.92966 -14.77299 -14.42457 -14.18663 -13.75206 -13.35667 -13.17049 -12.84235 -12.69474 -12.60340 -12.27038 -12.24970 -12.12250 -11.96433 -11.91502 -11.81828 -11.72472 -11.38411 -11.15970 -10.62506 -10.00360 -8.53039 -7.91304 -5.62309 -0.73791 -0.04525 0.90717 1.34513 1.45975 1.47536 1.48704 1.57593 1.81596 1.92181 2.43086 2.51156 3.18863 3.22360 3.38686 3.58641 3.66333 3.74515 4.13845 4.19982 4.28388 4.32768 4.39346 4.45790 4.52452 4.56355 4.69530 4.77525 4.82000 4.99739 5.01466 5.12409 5.35362 5.40475 5.63639 6.11862 6.23058 6.41620 6.55215 6.78614 7.08958 7.68216 8.33709 9.10071 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.003197 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.321806 B = 8757.081484 C = 9707.157008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.571 3.429 4 O -0.490 6.490 5 C -0.067 4.067 6 C -0.078 4.078 7 C -0.041 4.041 8 C 0.590 3.410 9 O -0.553 6.553 10 N -0.584 5.584 11 C 0.079 3.921 12 C 0.174 3.826 13 N -0.605 5.605 14 C -0.280 4.280 15 H 0.063 0.937 16 C -0.030 4.030 17 N -0.927 5.927 18 Si 0.970 3.030 19 H -0.280 1.280 20 H -0.295 1.295 21 H -0.266 1.266 22 C 0.131 3.869 23 C 0.105 3.895 24 N -0.303 5.303 25 O 0.170 5.830 26 H 0.072 0.928 27 H 0.138 0.862 28 H 0.074 0.926 29 H 0.212 0.788 30 H 0.075 0.925 31 H 0.117 0.883 32 H -0.002 1.002 33 H 0.056 0.944 34 H 0.254 0.746 35 H 0.007 0.993 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.098 -0.196 9.263 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.260 6.260 3 C 0.413 3.587 4 O -0.378 6.378 5 C -0.130 4.130 6 C -0.100 4.100 7 C -0.196 4.196 8 C 0.376 3.624 9 O -0.432 6.432 10 N -0.315 5.315 11 C -0.045 4.045 12 C 0.047 3.953 13 N -0.328 5.328 14 C -0.410 4.410 15 H 0.081 0.919 16 C -0.228 4.228 17 N -0.569 5.569 18 Si 0.797 3.203 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.190 1.190 22 C 0.005 3.995 23 C -0.018 4.018 24 N 0.003 4.997 25 O 0.083 5.917 26 H 0.091 0.909 27 H 0.156 0.844 28 H 0.093 0.907 29 H 0.229 0.771 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.016 0.984 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.341 -0.265 9.172 20.508 hybrid contribution 0.401 0.092 -0.596 0.725 sum -17.940 -0.173 8.576 19.885 Atomic orbital electron populations 1.23821 0.72438 1.06670 1.03600 1.86636 1.26525 1.29855 1.82963 1.18766 0.84108 0.82803 0.73072 1.90962 1.64177 1.36631 1.46066 1.22801 0.90929 0.87164 1.12138 1.23004 0.88196 1.01885 0.96872 1.23395 0.96577 0.90083 1.09564 1.17092 0.81778 0.86103 0.77410 1.90750 1.86343 1.13456 1.52605 1.48006 1.05465 1.10915 1.67117 1.23134 1.03050 0.78977 0.99344 1.20904 0.86228 0.96121 0.92027 1.44063 1.02033 1.02941 1.83798 1.19329 0.91522 1.22915 1.07274 0.91914 1.26282 1.00257 1.02218 0.94037 1.70144 1.38649 1.37676 1.10454 0.85262 0.79636 0.78922 0.76510 1.20591 1.22104 1.19033 1.21408 0.98570 0.85774 0.93713 1.22252 0.83348 0.96768 0.99396 1.74071 0.98545 1.14105 1.12943 1.85084 1.09990 1.32983 1.63682 0.90901 0.84411 0.90704 0.77133 0.90683 0.86548 0.98365 0.92528 0.93733 0.97493 0.90314 0.88481 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.57 113.37 1.20 1.41 16 2 O -0.34 -5.31 10.58 -56.15 -0.59 -5.91 16 3 C 0.57 10.82 7.96 70.23 0.56 11.38 16 4 O -0.49 -10.85 16.70 19.85 0.33 -10.52 16 5 C -0.07 -1.40 7.36 24.33 0.18 -1.22 16 6 C -0.08 -1.81 10.78 22.89 0.25 -1.57 16 7 C -0.04 -1.19 6.88 42.93 0.30 -0.89 16 8 C 0.59 20.64 7.71 86.93 0.67 21.31 16 9 O -0.55 -21.08 16.37 -3.70 -0.06 -21.14 16 10 N -0.58 -21.34 2.94 -820.02 -2.41 -23.75 16 11 C 0.08 2.94 6.37 86.56 0.55 3.50 16 12 C 0.17 8.19 5.50 86.56 0.48 8.66 16 13 N -0.60 -30.01 2.85 -697.34 -1.99 -32.00 16 14 C -0.28 -14.98 9.39 84.03 0.79 -14.19 16 15 H 0.06 3.27 7.86 -2.91 -0.02 3.24 16 16 C -0.03 -1.62 4.99 84.86 0.42 -1.20 16 17 N -0.93 -53.91 12.14 21.65 0.26 -53.64 16 18 Si 0.97 43.28 29.57 68.60 2.03 45.31 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 C 0.13 5.57 6.67 86.41 0.58 6.14 16 23 C 0.11 3.75 6.60 86.41 0.57 4.32 16 24 N -0.30 -8.42 8.58 -48.97 -0.42 -8.84 16 25 O 0.17 3.94 11.21 65.77 0.74 4.68 16 26 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.21 4.19 8.06 -2.91 -0.02 4.16 16 30 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.12 4.02 4.08 -20.80 -0.08 3.93 16 32 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.06 2.90 7.09 -2.39 -0.02 2.88 16 34 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.08 3.15 7.94 -2.39 -0.02 3.13 16 37 H 0.10 3.25 6.99 -2.39 -0.02 3.23 16 38 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -67.32 330.33 5.45 -61.87 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.03 Total: 6.30 kcal Atomic # 6 Polarization: 31.12 SS G_CDS: 6.53 Total: 37.66 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -4.56 Total: -118.24 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: 0.41 Total: -32.89 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -67.32 5.45 -61.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330693498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.726 kcal (2) G-P(sol) polarization free energy of solvation -67.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds