Wall clock time and date at job start Fri Apr 10 2020 18:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46963 * 120.59560 * 151.29561 * 9 7 2 11 11 C 1.53811 * 108.39782 * 124.76136 * 10 9 7 12 12 N 1.46965 * 108.58248 * 49.63604 * 11 10 9 13 13 C 1.34779 * 120.59500 * 124.62133 * 12 11 10 14 14 O 1.21275 * 119.99814 * 180.02562 * 13 12 11 15 15 C 1.50696 * 119.99660 * 0.02806 * 13 12 11 16 16 N 1.46507 * 109.47086 * 179.97438 * 15 13 12 17 17 C 1.34944 * 126.04318 * 124.71627 * 16 15 13 18 18 C 1.35312 * 107.74940 * 179.84385 * 17 16 15 19 19 N 1.48016 * 126.04266 * 180.16391 * 18 17 16 20 20 O 1.21799 * 120.00397 * 180.27673 * 19 18 17 21 21 O 1.21805 * 119.99930 * 0.27658 * 19 18 17 22 22 C 1.39876 * 107.91718 * 0.41630 * 18 17 16 23 23 N 1.30837 * 108.20369 * 359.74119 * 22 18 17 24 24 C 1.46959 * 118.80874 * 304.64996 * 12 11 10 25 25 C 1.46965 * 120.59269 * 331.57485 * 9 7 2 26 26 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.61152 * 244.53986 * 10 9 7 28 28 H 1.08995 * 109.61009 * 5.05482 * 10 9 7 29 29 H 1.08993 * 109.74227 * 289.84390 * 11 10 9 30 30 H 1.09000 * 109.67222 * 169.38489 * 11 10 9 31 31 H 1.09001 * 109.47755 * 299.99323 * 15 13 12 32 32 H 1.08997 * 109.47578 * 59.99996 * 15 13 12 33 33 H 1.08000 * 126.12211 * 359.97438 * 17 16 15 34 34 H 1.07998 * 125.89545 * 179.72206 * 22 18 17 35 35 H 1.09005 * 109.61247 * 295.47597 * 24 12 11 36 36 H 1.09011 * 109.60878 * 174.97188 * 24 12 11 37 37 H 1.08999 * 109.61248 * 354.94868 * 25 9 7 38 38 H 1.09006 * 109.61199 * 115.45384 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8067 -3.6518 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 6 0.3440 -5.7194 2.2440 14 8 -0.5934 -5.6865 3.0128 15 6 0.8052 -7.0359 1.6739 16 7 -0.0337 -8.1162 2.1989 17 6 -0.7241 -9.0137 1.4648 18 6 -1.3652 -9.8417 2.3217 19 7 -2.2365 -10.9780 1.9470 20 8 -2.7654 -11.6514 2.8132 21 8 -2.4247 -11.2397 0.7724 22 6 -1.0638 -9.4303 3.6242 23 7 -0.2657 -8.3961 3.5518 24 6 0.5347 -3.2874 2.4476 25 6 0.2345 -2.3368 1.2822 26 1 -0.4851 0.8400 -0.0004 27 1 1.0135 -4.0709 -0.8205 28 1 2.7054 -3.5085 -0.8010 29 1 3.0128 -4.2757 1.4847 30 1 2.2520 -5.6157 0.5909 31 1 0.7256 -7.0092 0.5871 32 1 1.8428 -7.2115 1.9580 33 1 -0.7570 -9.0636 0.3864 34 1 -1.4274 -9.8873 4.5326 35 1 1.3249 -2.8662 3.0691 36 1 -0.3663 -3.4305 3.0444 37 1 0.0947 -1.3248 1.6622 38 1 -0.6681 -2.6642 0.7661 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330931750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:56 Heat of formation + Delta-G solvation = 85.696771 kcal Electronic energy + Delta-G solvation = -25132.081356 eV Core-core repulsion = 21209.567129 eV Total energy + Delta-G solvation = -3922.514227 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.59914 -41.54365 -39.86665 -37.10127 -36.57549 -34.30011 -33.98922 -31.52116 -31.40570 -30.79096 -28.78124 -27.03132 -25.79878 -23.92281 -23.18660 -22.20495 -21.83127 -20.83144 -19.51247 -18.70046 -18.53928 -17.85068 -17.56554 -16.90645 -16.56251 -15.83833 -15.53481 -15.11872 -14.88584 -14.67033 -13.91132 -13.86076 -13.73611 -13.49705 -13.35846 -13.19110 -12.45083 -12.01610 -11.93385 -11.63045 -11.40463 -11.21741 -11.13010 -11.02128 -10.93957 -10.74694 -10.53104 -10.44737 -10.14364 -10.04197 -9.94150 -9.56138 -8.78914 -8.53889 -6.91072 -6.00489 -3.47047 0.09586 0.97193 1.20771 1.89367 2.08513 2.46528 2.95016 3.24138 3.32814 3.34264 3.76019 3.95765 4.15725 4.25883 4.31017 4.50825 4.63121 4.75744 4.91897 5.17341 5.43142 5.47298 5.51006 5.59159 5.79378 5.92179 6.08806 6.13509 6.25256 6.28437 6.43442 6.55982 6.75526 7.02415 7.34630 7.48778 7.58738 7.60310 8.09404 8.19538 8.95254 9.57795 10.12946 11.07114 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.037130 B = 0.002626 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.916623 B =10660.976074 C =10736.107190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.263 4.263 8 H 0.069 0.931 9 N -0.590 5.590 10 C 0.130 3.870 11 C 0.084 3.916 12 N -0.590 5.590 13 C 0.495 3.505 14 O -0.526 6.526 15 C 0.108 3.892 16 N -0.331 5.331 17 C 0.156 3.844 18 C -0.194 4.194 19 N 0.072 4.928 20 O -0.167 6.167 21 O -0.178 6.178 22 C 0.106 3.894 23 N -0.235 5.235 24 C 0.089 3.911 25 C 0.158 3.842 26 H 0.257 0.743 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.206 0.794 34 H 0.209 0.791 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.508 -16.009 2.389 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.392 4.392 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.003 3.997 11 C -0.041 4.041 12 N -0.323 5.323 13 C 0.280 3.720 14 O -0.402 6.402 15 C -0.016 4.016 16 N -0.109 5.109 17 C 0.002 3.998 18 C -0.292 4.292 19 N 0.588 4.412 20 O -0.381 6.381 21 O -0.389 6.389 22 C -0.085 4.085 23 N -0.054 5.054 24 C -0.034 4.034 25 C 0.032 3.968 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.223 0.777 34 H 0.226 0.774 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.096 -14.250 3.558 15.247 hybrid contribution -0.240 0.088 -0.715 0.760 sum 3.855 -14.162 2.842 14.950 Atomic orbital electron populations 1.70013 1.05392 1.25916 1.52936 1.25112 0.95306 0.98741 1.00194 0.86195 0.79345 0.83570 0.77456 1.20131 1.21555 1.21360 1.19210 0.92788 0.84523 1.42645 0.91285 1.44023 1.36514 1.01623 1.49134 1.21362 0.98693 0.87524 0.92166 1.22602 0.88643 1.00151 0.92726 1.48058 1.32384 1.06669 1.45150 1.20091 0.84109 0.84953 0.82871 1.90777 1.28106 1.86015 1.35325 1.21988 0.94984 0.83928 1.00709 1.48297 1.35213 1.22657 1.04724 1.22340 0.89929 0.87888 0.99651 1.21005 1.12511 1.00204 0.95450 1.42443 0.98560 0.99795 1.00405 1.94543 1.50080 1.48338 1.45098 1.94545 1.67025 1.74724 1.02607 1.24020 0.94829 0.92738 0.96895 1.77941 1.18646 1.14630 0.94151 1.22604 1.00104 0.82048 0.98659 1.21213 0.89031 0.98699 0.87881 0.93320 0.95782 0.91103 0.90782 0.91313 0.84584 0.85458 0.77724 0.77425 0.91684 0.89981 0.87987 0.95789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 11.20 55.49 0.62 -23.88 16 2 C 0.01 0.15 4.91 -17.44 -0.09 0.07 16 3 Si 0.91 20.23 29.59 -169.99 -5.03 15.20 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.50 9.57 -15.06 -0.14 -6.65 16 8 H 0.07 1.67 7.89 -52.48 -0.41 1.25 16 9 N -0.59 -13.06 2.96 -171.77 -0.51 -13.57 16 10 C 0.13 2.18 6.70 -3.37 -0.02 2.15 16 11 C 0.08 1.05 6.52 -3.37 -0.02 1.02 16 12 N -0.59 -8.86 2.95 -172.22 -0.51 -9.36 16 13 C 0.50 7.08 7.73 -10.99 -0.08 7.00 16 14 O -0.53 -9.77 15.11 5.56 0.08 -9.68 16 15 C 0.11 0.95 5.33 -5.19 -0.03 0.93 16 16 N -0.33 -3.52 3.40 -62.55 -0.21 -3.73 16 17 C 0.16 1.43 11.13 -17.23 -0.19 1.24 16 18 C -0.19 -2.16 7.11 -80.38 -0.57 -2.73 16 19 N 0.07 0.93 4.45 33.75 0.15 1.08 16 20 O -0.17 -2.25 19.05 -29.46 -0.56 -2.81 16 21 O -0.18 -2.35 19.02 -29.46 -0.56 -2.92 16 22 C 0.11 1.16 11.75 -17.36 -0.20 0.95 16 23 N -0.24 -3.00 11.64 30.63 0.36 -2.65 16 24 C 0.09 1.60 6.59 -3.60 -0.02 1.58 16 25 C 0.16 3.45 5.51 -3.60 -0.02 3.43 16 26 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.54 5.91 -51.93 -0.31 0.23 16 31 H 0.14 0.72 7.65 -51.93 -0.40 0.32 16 32 H 0.13 0.80 7.91 -51.93 -0.41 0.39 16 33 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.21 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.52 6.99 -51.92 -0.36 1.16 16 37 H 0.10 2.52 6.00 -51.93 -0.31 2.20 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -33.32 330.82 -6.87 -40.19 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.29 Total: -1.85 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -1.40 Total: 8.99 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.10 Total: -52.12 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -1.04 Total: -15.41 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.32 -6.87 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330931750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.887 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds