Wall clock time and date at job start Fri Apr 10 2020 17:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86803 * 120.00509 * 2 1 4 4 H 1.48499 * 109.47268 * 270.00354 * 3 2 1 5 5 H 1.48500 * 109.46536 * 30.00214 * 3 2 1 6 6 H 1.48498 * 109.47121 * 149.99723 * 3 2 1 7 7 C 1.38956 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99650 * 180.02562 * 7 2 1 9 9 N 1.37087 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00454 * 180.02562 * 9 7 2 11 11 O 1.21302 * 119.99682 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00692 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47452 * 179.97438 * 12 10 9 14 14 C 1.34770 * 119.99889 * 180.02562 * 13 12 10 15 15 O 1.21590 * 120.00417 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00186 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00241 * 174.35214 * 16 14 13 18 18 C 1.52999 * 112.84944 * 293.95612 * 17 16 14 19 19 F 1.39894 * 109.47222 * 65.12396 * 18 17 16 20 20 F 1.39905 * 109.46794 * 185.12003 * 18 17 16 21 21 F 1.39895 * 109.47028 * 305.11511 * 18 17 16 22 22 C 1.53782 * 113.61239 * 162.75935 * 17 16 14 23 23 C 1.54058 * 86.98423 * 270.84003 * 22 17 16 24 24 C 1.53779 * 113.61202 * 65.15191 * 17 16 14 25 25 H 0.97004 * 119.99989 * 0.02562 * 1 2 3 26 26 H 0.97009 * 120.00103 * 0.02562 * 9 7 2 27 27 H 1.09007 * 109.46525 * 59.99965 * 12 10 9 28 28 H 1.09000 * 109.47326 * 300.00807 * 12 10 9 29 29 H 0.96995 * 120.00145 * 0.02562 * 13 12 10 30 30 H 0.96999 * 119.99493 * 354.35430 * 16 14 13 31 31 H 1.08994 * 113.61568 * 25.43257 * 22 17 16 32 32 H 1.08997 * 113.61711 * 156.33981 * 22 17 16 33 33 H 1.09003 * 113.61755 * 220.02476 * 23 22 17 34 34 H 1.08997 * 113.68542 * 89.12809 * 23 22 17 35 35 H 1.09005 * 113.61512 * 203.65896 * 24 17 16 36 36 H 1.08999 * 113.61437 * 334.56745 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4400 0.7001 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2435 -4.8630 0.0000 13 7 2.1955 -5.9765 -0.0007 14 6 1.7462 -7.2471 -0.0009 15 8 0.5507 -7.4693 -0.0009 16 7 2.6219 -8.2716 -0.0010 17 6 2.1382 -9.6488 0.1236 18 6 1.4998 -9.9334 1.4846 19 9 0.3412 -9.1623 1.6266 20 9 1.1703 -11.2904 1.5705 21 9 2.4041 -9.6079 2.5011 22 6 3.1699 -10.7053 -0.3058 23 6 2.5913 -10.5743 -1.7276 24 6 1.2820 -10.1111 -1.0672 25 1 -0.4850 0.8401 -0.0004 26 1 0.3532 -2.3906 -0.0005 27 1 0.6165 -4.9208 -0.8898 28 1 0.6171 -4.9205 0.8902 29 1 3.1491 -5.7993 -0.0011 30 1 3.5725 -8.0970 -0.0837 31 1 4.2025 -10.3673 -0.2203 32 1 3.0053 -11.6844 0.1439 33 1 2.5029 -11.5255 -2.2525 34 1 3.0744 -9.8031 -2.3276 35 1 0.6023 -10.9282 -0.8252 36 1 0.7917 -9.2937 -1.5958 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602992265.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:05 Heat of formation + Delta-G solvation = -193.427211 kcal Electronic energy + Delta-G solvation = -26129.579350 eV Core-core repulsion = 21620.811907 eV Total energy + Delta-G solvation = -4508.767443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.06975 -47.66655 -47.40917 -40.63244 -38.86622 -37.93182 -34.45363 -33.75819 -33.24186 -31.38494 -28.47333 -27.21627 -26.30208 -24.55073 -23.31021 -21.23554 -19.97509 -19.58393 -18.64442 -18.43879 -18.28447 -17.97322 -17.94272 -16.17224 -15.62802 -15.50228 -15.27616 -14.66618 -14.57011 -14.46368 -14.34181 -14.07040 -14.04603 -13.96540 -13.63293 -13.57050 -13.51668 -13.13630 -12.81460 -12.53145 -12.21220 -12.01321 -11.64294 -11.37162 -11.26827 -11.13146 -10.96916 -10.46916 -10.33236 -10.06592 -9.64905 -9.41409 -8.76859 -8.64896 -8.11495 -6.52605 -3.94688 2.32552 2.66083 3.10708 3.21442 3.21596 3.26739 3.50351 3.71961 3.75871 3.86499 4.01560 4.17105 4.29228 4.44578 4.58968 4.77351 4.87020 5.16104 5.18652 5.21814 5.43116 5.51127 5.74809 5.76826 5.87114 5.97093 6.05194 6.21258 6.65574 6.84260 7.44863 7.90797 8.05557 8.43447 8.63305 9.03323 9.37915 9.85627 10.64238 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.032175 B = 0.002809 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.044023 B = 9963.871431 C =10155.671496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.718 5.718 14 C 0.701 3.299 15 O -0.572 6.572 16 N -0.723 5.723 17 C 0.125 3.875 18 C 0.445 3.555 19 F -0.158 7.158 20 F -0.184 7.184 21 F -0.185 7.185 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.130 4.130 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.408 0.592 30 H 0.407 0.593 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -21.638 -1.526 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.485 6.485 12 C 0.001 3.999 13 N -0.376 5.376 14 C 0.401 3.599 15 O -0.448 6.448 16 N -0.381 5.381 17 C 0.034 3.966 18 C 0.389 3.611 19 F -0.139 7.139 20 F -0.166 7.166 21 F -0.167 7.167 22 C -0.168 4.168 23 C -0.169 4.169 24 C -0.168 4.168 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.245 0.755 30 H 0.244 0.756 31 H 0.107 0.893 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.437 -21.582 -1.471 21.904 hybrid contribution 0.524 1.087 0.389 1.268 sum 3.962 -20.495 -1.082 20.903 Atomic orbital electron populations 1.69612 1.06021 1.28558 1.49202 1.25328 0.95663 0.99941 0.96754 0.85811 0.79237 0.80485 0.78484 1.20261 1.20789 1.19310 1.19727 0.93458 0.81991 1.48339 0.87677 1.41780 1.09507 1.04436 1.62530 1.19738 0.88291 0.84991 0.85653 1.90494 1.13725 1.86847 1.57459 1.20816 0.91109 0.84693 1.03309 1.44733 1.11433 1.03059 1.78343 1.15875 0.85245 0.80577 0.78245 1.90984 1.13382 1.83828 1.56655 1.44537 1.10083 1.02655 1.80778 1.22195 0.99453 0.84574 0.90411 1.20934 0.77939 0.74064 0.88210 1.93324 1.49811 1.74491 1.96271 1.93135 1.93007 1.33693 1.96724 1.93169 1.67553 1.92425 1.63513 1.23350 0.98281 0.97754 0.97409 1.22855 0.96148 1.02537 0.95408 1.23274 0.97072 1.02259 0.94199 0.91559 0.76995 0.89854 0.89848 0.75492 0.75640 0.89287 0.87348 0.90014 0.89232 0.88318 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 13.05 55.50 0.72 -23.06 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.43 29.55 -169.99 -5.02 15.40 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.31 -8.26 9.68 -14.94 -0.14 -8.40 16 8 H 0.11 2.95 7.16 -52.48 -0.38 2.58 16 9 N -0.55 -13.48 5.29 -10.96 -0.06 -13.53 16 10 C 0.43 9.68 7.85 -10.99 -0.09 9.60 16 11 O -0.60 -15.07 15.24 5.54 0.08 -14.98 16 12 C 0.13 2.35 6.15 -5.20 -0.03 2.32 16 13 N -0.72 -11.64 5.53 -66.41 -0.37 -12.01 16 14 C 0.70 10.81 8.00 -86.92 -0.70 10.12 16 15 O -0.57 -10.45 12.80 5.29 0.07 -10.39 16 16 N -0.72 -8.19 5.08 -51.66 -0.26 -8.45 16 17 C 0.13 1.30 0.68 -131.01 -0.09 1.21 16 18 C 0.44 5.63 2.68 37.16 0.10 5.73 16 19 F -0.16 -2.54 14.49 2.25 0.03 -2.51 16 20 F -0.18 -2.07 15.71 2.25 0.04 -2.03 16 21 F -0.19 -2.45 17.24 2.25 0.04 -2.41 16 22 C -0.13 -0.86 7.28 -25.77 -0.19 -1.05 16 23 C -0.13 -0.87 8.00 -25.77 -0.21 -1.07 16 24 C -0.13 -1.23 6.81 -25.92 -0.18 -1.41 16 25 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.41 6.38 7.46 -40.82 -0.30 6.08 16 30 H 0.41 3.52 8.68 -40.82 -0.35 3.16 16 31 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.11 0.63 7.32 -51.93 -0.38 0.25 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.86 7.67 -51.93 -0.40 0.46 16 36 H 0.10 1.14 7.16 -51.93 -0.37 0.77 16 LS Contribution 320.26 15.07 4.83 4.83 Total: -1.00 -31.75 320.26 -5.27 -37.02 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -3.75 Total: 14.51 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: -1.61 Total: 17.62 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.04 Total: -57.05 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: 0.15 Total: -25.37 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.11 Total: -6.95 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.75 -5.27 -37.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602992265.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.405 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds