Wall clock time and date at job start Fri Apr 10 2020 17:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 116.99970 * 2 1 4 4 C 1.38566 * 120.07420 * 0.02562 * 3 2 1 5 5 C 1.38243 * 120.00137 * 180.02562 * 4 3 2 6 6 C 1.38248 * 120.14270 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.15179 * 0.02562 * 6 5 4 8 8 C 1.38565 * 119.99655 * 359.72554 * 7 6 5 9 9 O 1.35993 * 120.07441 * 180.27555 * 8 7 6 10 10 C 1.42902 * 117.00106 * 0.27045 * 9 8 7 11 11 C 1.50697 * 109.47095 * 180.02562 * 10 9 8 12 12 O 1.20819 * 120.00049 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99714 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99736 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47008 * 180.02562 * 14 13 11 16 16 O 1.21295 * 120.00286 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00132 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00270 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00191 * 0.02562 * 18 17 15 20 20 C 1.38955 * 120.00217 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00135 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99802 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46998 * 90.00435 * 22 20 18 24 24 H 1.48503 * 109.47028 * 209.99966 * 22 20 18 25 25 H 1.48498 * 109.47468 * 330.00147 * 22 20 18 26 26 H 1.09002 * 109.47382 * 300.00030 * 1 2 3 27 27 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 60.00137 * 1 2 3 29 29 H 1.08004 * 119.99931 * 359.97063 * 4 3 2 30 30 H 1.07994 * 119.93014 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.92730 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.99934 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.46932 * 300.00289 * 10 9 8 34 34 H 1.08999 * 109.46597 * 59.99857 * 10 9 8 35 35 H 1.08999 * 109.47221 * 300.00180 * 14 13 11 36 36 H 1.09000 * 109.47372 * 60.00402 * 14 13 11 37 37 H 0.96999 * 120.00427 * 0.02562 * 17 15 14 38 38 H 0.96999 * 120.00374 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0000 6 6 3.3029 3.6798 -0.0005 7 6 4.0603 2.5233 -0.0011 8 6 3.4360 1.2863 0.0047 9 8 4.1795 0.1476 0.0098 10 6 5.6003 0.3006 0.0150 11 6 6.2518 -1.0583 0.0196 12 8 5.5695 -2.0553 0.0181 13 8 7.5902 -1.1608 0.0243 14 6 8.1486 -2.5012 0.0279 15 6 9.6533 -2.4185 0.0336 16 8 10.2012 -1.3364 0.0350 17 7 10.3902 -3.5469 0.0372 18 6 11.7591 -3.4717 0.0418 19 1 12.2470 -2.5082 0.0430 20 6 12.5188 -4.6351 0.0450 21 7 13.8309 -4.5630 0.0499 22 14 11.6750 -6.3016 0.0437 23 1 11.4557 -6.7443 -1.3568 24 1 12.5310 -7.2905 0.7470 25 1 10.3675 -6.1951 0.7396 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 0.2146 2.3197 0.0005 30 1 1.3343 4.5115 0.0000 31 1 3.7908 4.6433 -0.0014 32 1 5.1386 2.5840 -0.0019 33 1 5.9100 0.8486 -0.8749 34 1 5.9031 0.8522 0.9050 35 1 7.8109 -3.0330 0.9174 36 1 7.8171 -3.0353 -0.8625 37 1 9.9521 -4.4123 0.0358 38 1 14.3613 -5.3752 0.0525 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731234676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:12 Heat of formation + Delta-G solvation = -149.757974 kcal Electronic energy + Delta-G solvation = -24006.317141 eV Core-core repulsion = 20009.007328 eV Total energy + Delta-G solvation = -3997.309813 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00811 -40.35167 -38.82277 -38.25064 -37.16259 -36.15996 -34.08131 -31.82227 -30.97815 -30.68329 -29.43321 -27.86337 -27.52634 -24.50936 -22.84207 -22.63734 -20.95856 -19.67306 -19.15015 -18.62348 -17.76967 -17.46975 -17.07648 -16.82537 -16.17554 -16.13134 -15.51669 -15.50180 -15.14051 -15.03124 -14.89890 -14.19063 -14.11514 -13.59996 -13.11752 -13.04113 -12.82895 -12.49331 -12.42927 -12.27001 -12.18912 -11.66776 -11.49277 -11.48422 -11.39879 -11.26991 -10.65696 -10.58625 -10.47517 -10.05994 -9.68981 -9.12482 -8.69570 -8.30745 -8.16996 -6.40331 -3.93381 0.91231 1.08659 1.93522 2.11716 2.95653 2.98678 3.03302 3.11679 3.28819 3.37412 3.53323 4.03080 4.24427 4.44255 4.54677 4.58624 4.74197 4.75529 4.82991 4.83349 4.85718 5.00651 5.06716 5.09968 5.17965 5.27619 5.33821 5.52046 5.65137 5.79437 5.90484 6.13369 6.29035 6.39396 6.66618 7.21931 7.43187 7.71469 7.99230 8.46144 8.82240 9.28443 9.63484 10.71804 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.031846 B = 0.002254 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.032609 B =12416.909810 C =13270.188546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.103 3.897 4 C -0.175 4.175 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.173 4.173 8 C 0.102 3.898 9 O -0.284 6.284 10 C 0.069 3.931 11 C 0.462 3.538 12 O -0.488 6.488 13 O -0.321 6.321 14 C 0.060 3.940 15 C 0.447 3.553 16 O -0.558 6.558 17 N -0.578 5.578 18 C -0.309 4.309 19 H 0.123 0.877 20 C 0.045 3.955 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.268 1.268 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.135 0.865 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.140 0.860 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.373 0.627 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.931 12.309 -0.125 29.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.058 3.942 4 C -0.193 4.193 5 C -0.135 4.135 6 C -0.134 4.134 7 C -0.192 4.192 8 C 0.056 3.944 9 O -0.197 6.197 10 C -0.007 4.007 11 C 0.302 3.698 12 O -0.375 6.375 13 O -0.236 6.236 14 C -0.018 4.018 15 C 0.232 3.768 16 O -0.439 6.439 17 N -0.218 5.218 18 C -0.437 4.437 19 H 0.140 0.860 20 C -0.159 4.159 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.193 1.193 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.207 0.793 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.488 12.197 -0.122 29.162 hybrid contribution -0.631 -1.294 0.015 1.440 sum -27.119 10.903 -0.107 29.229 Atomic orbital electron populations 1.23083 0.78554 1.04169 1.01063 1.86252 1.21004 1.25645 1.88739 1.18269 0.88980 0.85478 1.01522 1.21080 0.99984 0.91483 1.06784 1.20883 0.94647 0.96994 1.01007 1.20894 0.93708 0.97971 1.00809 1.21202 1.00902 0.91003 1.06048 1.18244 0.88183 0.85665 1.02262 1.86179 1.16153 1.28262 1.89121 1.21873 0.80030 0.93121 1.05705 1.22843 0.81701 0.91289 0.73925 1.90711 1.64322 1.38599 1.43843 1.86492 1.20637 1.33174 1.83299 1.22807 0.94224 0.80820 1.03903 1.19145 0.86461 0.85527 0.85625 1.90606 1.72313 1.27388 1.53633 1.42028 1.07447 1.05911 1.66436 1.19423 0.78331 0.97184 1.48732 0.85976 1.25044 0.95382 0.98251 0.97225 1.69611 1.03978 1.29478 1.48248 0.86675 0.79608 0.84084 0.79125 1.19380 1.19930 1.19317 0.92730 0.88092 0.92722 0.84717 0.85508 0.85277 0.84222 0.87346 0.87341 0.89158 0.89142 0.79335 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.58 10.28 -34.22 -0.35 -3.93 16 3 C 0.10 1.15 6.70 -39.12 -0.26 0.89 16 4 C -0.17 -1.43 9.04 -39.46 -0.36 -1.79 16 5 C -0.12 -0.85 10.04 -39.58 -0.40 -1.24 16 6 C -0.12 -0.88 10.04 -39.57 -0.40 -1.27 16 7 C -0.17 -1.56 9.04 -39.46 -0.36 -1.91 16 8 C 0.10 1.19 6.70 -39.12 -0.26 0.93 16 9 O -0.28 -3.89 9.45 -47.36 -0.45 -4.33 16 10 C 0.07 0.79 5.33 36.00 0.19 0.98 16 11 C 0.46 7.12 8.03 36.00 0.29 7.41 16 12 O -0.49 -8.84 16.25 -25.47 -0.41 -9.25 16 13 O -0.32 -5.60 9.76 -45.91 -0.45 -6.04 16 14 C 0.06 1.07 5.94 36.00 0.21 1.28 16 15 C 0.45 10.26 7.86 -10.99 -0.09 10.18 16 16 O -0.56 -15.12 16.08 -14.11 -0.23 -15.35 16 17 N -0.58 -13.65 5.09 -10.96 -0.06 -13.70 16 18 C -0.31 -8.58 10.16 -14.93 -0.15 -8.74 16 19 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 20 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 21 N -0.87 -25.02 13.96 55.50 0.77 -24.24 16 22 Si 0.88 19.01 27.73 -169.99 -4.71 14.29 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 26 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 27 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.14 0.77 6.30 -52.48 -0.33 0.44 16 30 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.14 0.98 6.30 -52.49 -0.33 0.65 16 33 H 0.11 0.97 7.65 -51.93 -0.40 0.57 16 34 H 0.11 0.97 7.68 -51.93 -0.40 0.57 16 35 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 36 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 37 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 38 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -36.21 338.76 -5.61 -41.82 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.16 Total: 6.64 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -0.68 Total: 9.00 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.72 Total: -37.95 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.89 Total: -38.91 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.21 -5.61 -41.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.937 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds