Wall clock time and date at job start Fri Apr 10 2020 17:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 116.99970 * 2 1 4 4 C 1.38566 * 120.07420 * 0.02562 * 3 2 1 5 5 C 1.38243 * 120.00137 * 180.02562 * 4 3 2 6 6 C 1.38248 * 120.14270 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.15179 * 0.02562 * 6 5 4 8 8 C 1.38565 * 119.99655 * 359.72554 * 7 6 5 9 9 O 1.35993 * 120.07441 * 180.27555 * 8 7 6 10 10 C 1.42902 * 117.00106 * 0.27045 * 9 8 7 11 11 C 1.50697 * 109.47095 * 180.02562 * 10 9 8 12 12 O 1.20819 * 120.00049 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99714 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99736 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47008 * 180.02562 * 14 13 11 16 16 O 1.21295 * 120.00286 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00132 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00270 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00191 * 0.02562 * 18 17 15 20 20 C 1.38955 * 120.00217 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00135 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99802 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46998 * 90.00435 * 22 20 18 24 24 H 1.48503 * 109.47028 * 209.99966 * 22 20 18 25 25 H 1.48498 * 109.47468 * 330.00147 * 22 20 18 26 26 H 1.09002 * 109.47382 * 300.00030 * 1 2 3 27 27 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 60.00137 * 1 2 3 29 29 H 1.08004 * 119.99931 * 359.97063 * 4 3 2 30 30 H 1.07994 * 119.93014 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.92730 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.99934 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.46932 * 300.00289 * 10 9 8 34 34 H 1.08999 * 109.46597 * 59.99857 * 10 9 8 35 35 H 1.08999 * 109.47221 * 300.00180 * 14 13 11 36 36 H 1.09000 * 109.47372 * 60.00402 * 14 13 11 37 37 H 0.96999 * 120.00427 * 0.02562 * 17 15 14 38 38 H 0.96999 * 120.00374 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0000 6 6 3.3029 3.6798 -0.0005 7 6 4.0603 2.5233 -0.0011 8 6 3.4360 1.2863 0.0047 9 8 4.1795 0.1476 0.0098 10 6 5.6003 0.3006 0.0150 11 6 6.2518 -1.0583 0.0196 12 8 5.5695 -2.0553 0.0181 13 8 7.5902 -1.1608 0.0243 14 6 8.1486 -2.5012 0.0279 15 6 9.6533 -2.4185 0.0336 16 8 10.2012 -1.3364 0.0350 17 7 10.3902 -3.5469 0.0372 18 6 11.7591 -3.4717 0.0418 19 1 12.2470 -2.5082 0.0430 20 6 12.5188 -4.6351 0.0450 21 7 13.8309 -4.5630 0.0499 22 14 11.6750 -6.3016 0.0437 23 1 11.4557 -6.7443 -1.3568 24 1 12.5310 -7.2905 0.7470 25 1 10.3675 -6.1951 0.7396 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 0.2146 2.3197 0.0005 30 1 1.3343 4.5115 0.0000 31 1 3.7908 4.6433 -0.0014 32 1 5.1386 2.5840 -0.0019 33 1 5.9100 0.8486 -0.8749 34 1 5.9031 0.8522 0.9050 35 1 7.8109 -3.0330 0.9174 36 1 7.8171 -3.0353 -0.8625 37 1 9.9521 -4.4123 0.0358 38 1 14.3613 -5.3752 0.0525 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731234676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:12 Heat of formation + Delta-G solvation = -174.881068 kcal Electronic energy + Delta-G solvation = -24007.406560 eV Core-core repulsion = 20009.007328 eV Total energy + Delta-G solvation = -3998.399232 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97338 -41.37551 -40.24797 -39.46882 -37.91246 -37.45011 -36.10123 -33.88163 -31.81575 -31.29808 -30.58628 -29.09212 -28.07024 -26.40109 -23.67174 -23.28483 -22.03967 -21.56590 -20.55280 -19.91504 -18.79055 -18.45130 -18.20563 -17.84500 -17.48392 -17.06751 -17.06643 -16.54900 -16.40663 -15.72015 -15.66305 -15.61798 -15.43765 -14.87317 -14.57141 -14.23013 -14.14619 -13.93294 -13.53119 -13.48168 -13.01536 -13.00000 -12.46941 -12.35079 -12.22797 -12.03970 -12.01147 -11.99437 -11.95455 -11.67408 -11.60156 -10.63656 -10.35445 -9.74390 -8.86937 -8.46990 -6.10151 0.29617 0.44005 0.83412 0.92747 1.29926 1.32969 1.43562 1.73544 2.19131 2.29261 2.38153 2.75519 2.80511 3.07241 3.46715 3.82234 3.88035 3.92925 3.96089 4.04183 4.07946 4.11081 4.12273 4.32235 4.40043 4.44299 4.49879 4.73108 4.73914 5.11723 5.19900 5.34635 5.46011 5.54662 5.72787 5.84068 5.96910 6.41940 6.52314 6.57658 6.75711 7.24029 7.75075 8.69394 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.031846 B = 0.002254 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.032609 B =12416.909810 C =13270.188546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.077 3.923 4 C -0.174 4.174 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.175 4.175 8 C 0.068 3.932 9 O -0.314 6.314 10 C 0.072 3.928 11 C 0.466 3.534 12 O -0.518 6.518 13 O -0.336 6.336 14 C 0.068 3.932 15 C 0.450 3.550 16 O -0.607 6.607 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.063 0.937 20 C -0.007 4.007 21 N -0.924 5.924 22 Si 0.960 3.040 23 H -0.255 1.255 24 H -0.272 1.272 25 H -0.232 1.232 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.393 0.607 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.861 12.299 -0.102 32.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.032 3.968 4 C -0.193 4.193 5 C -0.132 4.132 6 C -0.137 4.137 7 C -0.193 4.193 8 C 0.023 3.977 9 O -0.229 6.229 10 C -0.003 4.003 11 C 0.309 3.691 12 O -0.406 6.406 13 O -0.251 6.251 14 C -0.009 4.009 15 C 0.237 3.763 16 O -0.491 6.491 17 N -0.217 5.217 18 C -0.462 4.462 19 H 0.081 0.919 20 C -0.208 4.208 21 N -0.563 5.563 22 Si 0.780 3.220 23 H -0.179 1.179 24 H -0.196 1.196 25 H -0.156 1.156 26 H 0.087 0.913 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.175 0.825 30 H 0.175 0.825 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.229 0.771 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.452 12.203 -0.098 31.880 hybrid contribution 0.249 -1.101 0.004 1.129 sum -29.203 11.102 -0.094 31.242 Atomic orbital electron populations 1.23331 0.76531 1.05263 1.02431 1.86187 1.23372 1.26717 1.89160 1.18668 0.89298 0.86161 1.02716 1.21400 1.01093 0.90946 1.05833 1.21318 0.94950 0.97683 0.99212 1.21292 0.94087 0.98562 0.99712 1.21471 1.01943 0.90536 1.05393 1.18628 0.88547 0.85913 1.04582 1.86105 1.16864 1.29993 1.89958 1.22048 0.79465 0.90709 1.08120 1.23558 0.80566 0.92560 0.72456 1.90692 1.64535 1.39946 1.45406 1.86491 1.22070 1.32883 1.83668 1.22657 0.89910 0.81818 1.06515 1.20084 0.88769 0.84438 0.83052 1.90582 1.74075 1.29295 1.55174 1.41811 1.05944 1.07230 1.66729 1.19006 0.80521 0.95512 1.51125 0.91936 1.26082 0.95931 1.03162 0.95591 1.69774 1.06204 1.31400 1.48959 0.85428 0.79721 0.76692 0.80161 1.17940 1.19649 1.15566 0.91301 0.87292 0.91286 0.82493 0.82548 0.82708 0.82627 0.84761 0.84763 0.86491 0.86384 0.77083 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.08 10.28 -79.61 -0.82 -8.90 16 3 C 0.08 1.67 6.70 22.57 0.15 1.83 16 4 C -0.17 -2.53 9.04 22.35 0.20 -2.32 16 5 C -0.11 -1.31 10.04 22.27 0.22 -1.08 16 6 C -0.12 -1.46 10.04 22.27 0.22 -1.24 16 7 C -0.17 -2.84 9.04 22.35 0.20 -2.64 16 8 C 0.07 1.55 6.70 22.57 0.15 1.70 16 9 O -0.31 -8.56 9.45 -67.03 -0.63 -9.19 16 10 C 0.07 1.56 5.33 71.23 0.38 1.94 16 11 C 0.47 13.87 8.03 71.23 0.57 14.44 16 12 O -0.52 -18.29 16.25 28.42 0.46 -17.82 16 13 O -0.34 -11.34 9.76 -45.09 -0.44 -11.78 16 14 C 0.07 2.30 5.94 71.23 0.42 2.72 16 15 C 0.45 20.64 7.86 87.66 0.69 21.33 16 16 O -0.61 -33.97 16.08 15.72 0.25 -33.72 16 17 N -0.58 -26.98 5.09 -306.99 -1.56 -28.55 16 18 C -0.33 -19.18 10.16 84.04 0.85 -18.32 16 19 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 20 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 21 N -0.92 -54.43 13.96 21.66 0.30 -54.13 16 22 Si 0.96 38.00 27.73 68.60 1.90 39.90 16 23 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 24 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 25 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 26 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 27 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 0.62 7.66 -2.38 -0.02 0.60 16 29 H 0.16 1.40 6.30 -2.91 -0.02 1.38 16 30 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 31 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 32 H 0.16 1.83 6.30 -2.91 -0.02 1.81 16 33 H 0.13 2.16 7.65 -2.39 -0.02 2.14 16 34 H 0.13 2.16 7.68 -2.39 -0.02 2.15 16 35 H 0.12 3.38 8.13 -2.39 -0.02 3.37 16 36 H 0.12 3.39 8.13 -2.39 -0.02 3.37 16 37 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 38 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -84.42 338.76 5.64 -78.78 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.52 Total: 25.64 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 5.65 Total: 19.76 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -1.26 Total: -82.68 kcal Atomic # 8 Polarization: -80.23 SS G_CDS: -1.18 Total: -81.41 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.90 Total: 39.90 kcal Total: -84.42 5.64 -78.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.098 kcal (2) G-P(sol) polarization free energy of solvation -84.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds