Wall clock time and date at job start Fri Apr 10 2020 17:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35642 * 116.99755 * 2 1 4 4 C 1.38539 * 120.12951 * 359.97320 * 3 2 1 5 5 C 1.38244 * 120.24694 * 180.02562 * 4 3 2 6 6 C 1.38253 * 120.49602 * 359.95431 * 5 4 3 7 7 C 1.38529 * 120.24765 * 0.04564 * 6 5 4 8 8 O 1.35651 * 120.12864 * 179.97438 * 7 6 5 9 9 C 1.42894 * 116.99663 * 359.97438 * 8 7 6 10 10 C 1.40322 * 120.12118 * 180.02562 * 3 2 1 11 11 C 1.47083 * 120.24658 * 0.24689 * 10 3 2 12 12 O 1.21543 * 119.99951 * 269.72766 * 11 10 3 13 13 O 1.34784 * 119.99613 * 89.72339 * 11 10 3 14 14 C 1.45202 * 116.99414 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47001 * 180.02562 * 14 13 11 16 16 O 1.21291 * 119.99997 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00041 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99771 * 180.02562 * 17 15 14 19 19 H 1.08007 * 120.00210 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99844 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99702 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99885 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47433 * 89.99856 * 22 20 18 24 24 H 1.48504 * 109.46879 * 210.00083 * 22 20 18 25 25 H 1.48505 * 109.47137 * 329.99423 * 22 20 18 26 26 H 1.09003 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47264 * 300.00248 * 1 2 3 28 28 H 1.08997 * 109.47236 * 60.00507 * 1 2 3 29 29 H 1.07998 * 119.87553 * 0.02675 * 4 3 2 30 30 H 1.07995 * 119.75350 * 179.97438 * 5 4 3 31 31 H 1.08005 * 119.87504 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47143 * 299.99833 * 9 8 7 33 33 H 1.09008 * 109.47355 * 60.00032 * 9 8 7 34 34 H 1.09001 * 109.47014 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.47520 * 300.00103 * 14 13 11 36 36 H 1.09005 * 109.47366 * 60.00617 * 14 13 11 37 37 H 0.96994 * 120.00077 * 359.97438 * 17 15 14 38 38 H 0.96997 * 119.99429 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2928 2.3722 -0.0006 5 6 1.9178 3.6052 -0.0011 6 6 3.2976 3.6924 -0.0001 7 6 4.0695 2.5421 0.0004 8 8 5.4231 2.6305 0.0009 9 6 5.9875 3.9433 0.0001 10 6 3.4459 1.2851 -0.0005 11 6 4.2549 0.0567 -0.0066 12 8 4.5940 -0.4528 1.0435 13 8 4.6201 -0.5038 -1.1767 14 6 5.4176 -1.7153 -1.1066 15 6 5.7285 -2.1933 -2.5015 16 8 5.3188 -1.5738 -3.4603 17 7 6.4619 -3.3094 -2.6836 18 6 6.7452 -3.7440 -3.9526 19 1 6.3803 -3.1923 -4.8064 20 6 7.5008 -4.8949 -4.1403 21 7 7.9443 -5.5664 -3.1014 22 14 7.8875 -5.4866 -5.8694 23 1 9.1601 -4.8749 -6.3291 24 1 8.0212 -6.9656 -5.8681 25 1 6.7882 -5.0900 -6.7858 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.2143 2.3157 -0.0006 30 1 1.3239 4.5072 -0.0020 31 1 3.7755 4.6610 -0.0001 32 1 5.6593 4.4793 -0.8904 33 1 5.6586 4.4807 0.8897 34 1 7.0751 3.8712 0.0010 35 1 6.3481 -1.5077 -0.5781 36 1 4.8611 -2.4863 -0.5735 37 1 6.7899 -3.8047 -1.9168 38 1 8.4715 -6.3700 -3.2325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731235547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:17 Heat of formation + Delta-G solvation = -158.394682 kcal Electronic energy + Delta-G solvation = -25056.875192 eV Core-core repulsion = 21059.190863 eV Total energy + Delta-G solvation = -3997.684329 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01459 -39.58732 -39.33719 -37.96620 -36.65240 -35.79207 -33.90629 -31.82059 -31.27785 -29.89130 -28.29534 -28.10485 -27.03915 -24.87003 -23.93977 -22.05603 -21.03343 -19.45723 -18.96462 -17.97592 -17.67248 -17.20205 -16.71482 -16.58389 -16.05968 -15.77378 -15.71584 -15.63996 -15.08912 -14.94108 -14.39608 -13.90017 -13.86871 -13.26945 -13.16665 -12.93471 -12.74900 -12.40345 -12.04297 -11.92194 -11.78886 -11.76672 -11.55779 -11.38988 -11.07630 -11.01216 -10.38810 -10.30549 -10.21503 -10.20474 -9.52861 -8.81698 -8.43456 -8.40404 -8.00013 -6.42563 -3.84165 0.84462 1.13518 2.41442 2.56702 2.87419 3.18468 3.27552 3.33875 3.36052 3.40451 3.83971 4.17325 4.42856 4.66523 4.67769 4.74995 4.84334 4.93013 4.93753 4.95985 4.99658 5.18191 5.23121 5.28033 5.28509 5.39605 5.68457 5.81275 5.81410 5.86259 6.07158 6.08857 6.17114 6.74301 6.98993 7.07479 7.54784 7.97186 8.08519 8.57897 9.14967 9.48303 9.99140 10.74961 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.003185 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.929956 B = 8789.439485 C = 9494.711150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.305 6.305 3 C 0.209 3.791 4 C -0.249 4.249 5 C -0.019 4.019 6 C -0.249 4.249 7 C 0.209 3.791 8 O -0.305 6.305 9 C 0.027 3.973 10 C -0.172 4.172 11 C 0.533 3.467 12 O -0.502 6.502 13 O -0.315 6.315 14 C 0.059 3.941 15 C 0.442 3.558 16 O -0.574 6.574 17 N -0.555 5.555 18 C -0.301 4.301 19 H 0.105 0.895 20 C 0.024 3.976 21 N -0.898 5.898 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.269 1.269 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.395 0.605 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 18.334 9.617 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.217 6.217 3 C 0.161 3.839 4 C -0.268 4.268 5 C -0.038 4.038 6 C -0.268 4.268 7 C 0.161 3.839 8 O -0.217 6.217 9 C -0.067 4.067 10 C -0.174 4.174 11 C 0.375 3.625 12 O -0.390 6.390 13 O -0.229 6.229 14 C -0.019 4.019 15 C 0.227 3.773 16 O -0.458 6.458 17 N -0.193 5.193 18 C -0.430 4.430 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.539 5.539 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.193 1.193 26 H 0.124 0.876 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.228 0.772 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.860 18.027 9.263 23.483 hybrid contribution 0.266 -0.385 -0.199 0.509 sum -11.594 17.642 9.064 22.974 Atomic orbital electron populations 1.23190 0.77208 1.04715 1.01637 1.86104 1.22326 1.26083 1.87153 1.18458 0.89340 0.85163 0.90901 1.21036 1.00372 0.91545 1.13804 1.20811 0.93638 0.97205 0.92107 1.21037 0.94724 0.97192 1.13808 1.18457 0.82930 0.91568 0.90908 1.86105 1.16831 1.31576 1.87159 1.23189 0.99846 0.82078 1.01636 1.17368 0.90166 0.90189 1.19709 1.20492 0.76763 0.83066 0.82186 1.90826 1.52627 1.62373 1.33213 1.86718 1.64100 1.39705 1.32390 1.22757 0.95453 0.84938 0.98708 1.19339 0.84990 0.84183 0.88803 1.90556 1.55982 1.57516 1.41744 1.41694 1.45998 1.22124 1.09449 1.19727 1.30723 1.07979 0.84543 0.87672 1.25298 0.96715 0.96220 0.99598 1.69621 1.36199 1.18159 1.29956 0.85807 0.79010 0.77584 0.81583 1.20318 1.20865 1.19316 0.87642 0.92213 0.91976 0.84380 0.84793 0.84380 0.91978 0.92213 0.87644 0.89525 0.89520 0.77157 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.35 9.95 -18.63 -0.19 -4.54 16 3 C 0.21 2.96 6.70 -38.69 -0.26 2.70 16 4 C -0.25 -2.52 9.02 -39.47 -0.36 -2.88 16 5 C -0.02 -0.17 10.02 -39.57 -0.40 -0.57 16 6 C -0.25 -2.52 9.02 -39.47 -0.36 -2.88 16 7 C 0.21 2.96 6.70 -38.69 -0.26 2.70 16 8 O -0.30 -4.35 9.95 -18.65 -0.19 -4.54 16 9 C 0.03 0.23 9.81 101.05 0.99 1.22 16 10 C -0.17 -2.88 5.77 -104.74 -0.60 -3.49 16 11 C 0.53 10.74 6.46 34.32 0.22 10.96 16 12 O -0.50 -10.75 16.90 -19.30 -0.33 -11.08 16 13 O -0.32 -7.01 9.77 -47.40 -0.46 -7.47 16 14 C 0.06 1.27 5.95 36.00 0.21 1.49 16 15 C 0.44 11.43 7.86 -10.98 -0.09 11.34 16 16 O -0.57 -16.93 16.08 -14.11 -0.23 -17.16 16 17 N -0.55 -14.72 5.29 -10.96 -0.06 -14.78 16 18 C -0.30 -8.57 9.68 -14.93 -0.14 -8.72 16 19 H 0.11 3.12 7.16 -52.48 -0.38 2.75 16 20 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 21 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 22 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.14 0.97 6.28 -52.49 -0.33 0.64 16 30 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.14 0.97 6.28 -52.48 -0.33 0.64 16 32 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 33 H 0.06 0.38 7.66 -51.92 -0.40 -0.02 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 36 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.39 9.93 7.90 -40.82 -0.32 9.61 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 341.34 15.07 5.14 5.14 Total: -1.00 -37.16 341.34 -4.94 -42.09 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.20 Total: 6.52 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -0.14 Total: 13.65 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.67 Total: -38.81 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.39 Total: -44.79 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.16 -4.94 -42.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.302 kcal (2) G-P(sol) polarization free energy of solvation -37.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds