Wall clock time and date at job start Fri Apr 10 2020 17:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35642 * 116.99755 * 2 1 4 4 C 1.38539 * 120.12951 * 359.97320 * 3 2 1 5 5 C 1.38244 * 120.24694 * 180.02562 * 4 3 2 6 6 C 1.38253 * 120.49602 * 359.95431 * 5 4 3 7 7 C 1.38529 * 120.24765 * 0.04564 * 6 5 4 8 8 O 1.35651 * 120.12864 * 179.97438 * 7 6 5 9 9 C 1.42894 * 116.99663 * 359.97438 * 8 7 6 10 10 C 1.40322 * 120.12118 * 180.02562 * 3 2 1 11 11 C 1.47083 * 120.24658 * 0.24689 * 10 3 2 12 12 O 1.21543 * 119.99951 * 269.72766 * 11 10 3 13 13 O 1.34784 * 119.99613 * 89.72339 * 11 10 3 14 14 C 1.45202 * 116.99414 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47001 * 180.02562 * 14 13 11 16 16 O 1.21291 * 119.99997 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00041 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99771 * 180.02562 * 17 15 14 19 19 H 1.08007 * 120.00210 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99844 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99702 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99885 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47433 * 89.99856 * 22 20 18 24 24 H 1.48504 * 109.46879 * 210.00083 * 22 20 18 25 25 H 1.48505 * 109.47137 * 329.99423 * 22 20 18 26 26 H 1.09003 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47264 * 300.00248 * 1 2 3 28 28 H 1.08997 * 109.47236 * 60.00507 * 1 2 3 29 29 H 1.07998 * 119.87553 * 0.02675 * 4 3 2 30 30 H 1.07995 * 119.75350 * 179.97438 * 5 4 3 31 31 H 1.08005 * 119.87504 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47143 * 299.99833 * 9 8 7 33 33 H 1.09008 * 109.47355 * 60.00032 * 9 8 7 34 34 H 1.09001 * 109.47014 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.47520 * 300.00103 * 14 13 11 36 36 H 1.09005 * 109.47366 * 60.00617 * 14 13 11 37 37 H 0.96994 * 120.00077 * 359.97438 * 17 15 14 38 38 H 0.96997 * 119.99429 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2928 2.3722 -0.0006 5 6 1.9178 3.6052 -0.0011 6 6 3.2976 3.6924 -0.0001 7 6 4.0695 2.5421 0.0004 8 8 5.4231 2.6305 0.0009 9 6 5.9875 3.9433 0.0001 10 6 3.4459 1.2851 -0.0005 11 6 4.2549 0.0567 -0.0066 12 8 4.5940 -0.4528 1.0435 13 8 4.6201 -0.5038 -1.1767 14 6 5.4176 -1.7153 -1.1066 15 6 5.7285 -2.1933 -2.5015 16 8 5.3188 -1.5738 -3.4603 17 7 6.4619 -3.3094 -2.6836 18 6 6.7452 -3.7440 -3.9526 19 1 6.3803 -3.1923 -4.8064 20 6 7.5008 -4.8949 -4.1403 21 7 7.9443 -5.5664 -3.1014 22 14 7.8875 -5.4866 -5.8694 23 1 9.1601 -4.8749 -6.3291 24 1 8.0212 -6.9656 -5.8681 25 1 6.7882 -5.0900 -6.7858 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.2143 2.3157 -0.0006 30 1 1.3239 4.5072 -0.0020 31 1 3.7755 4.6610 -0.0001 32 1 5.6593 4.4793 -0.8904 33 1 5.6586 4.4807 0.8897 34 1 7.0751 3.8712 0.0010 35 1 6.3481 -1.5077 -0.5781 36 1 4.8611 -2.4863 -0.5735 37 1 6.7899 -3.8047 -1.9168 38 1 8.4715 -6.3700 -3.2325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731235547.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:16 Heat of formation + Delta-G solvation = -185.298124 kcal Electronic energy + Delta-G solvation = -25058.041813 eV Core-core repulsion = 21059.190863 eV Total energy + Delta-G solvation = -3998.850950 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.11333 -41.03634 -40.21788 -39.97934 -37.58557 -37.38948 -36.06313 -33.45875 -32.77185 -30.70829 -30.07971 -28.79095 -27.79246 -26.73971 -25.25188 -22.88082 -22.33205 -21.48698 -20.10721 -19.97547 -18.96908 -18.25490 -18.14344 -17.59947 -17.47320 -17.20343 -16.96508 -16.61906 -16.56631 -15.94933 -15.86841 -15.62276 -15.60251 -14.71338 -14.31139 -13.89946 -13.82713 -13.65929 -13.57696 -13.50744 -13.06756 -12.94627 -12.49981 -12.47665 -12.45046 -12.38488 -12.12003 -11.93198 -11.73378 -11.64027 -11.60531 -10.56834 -10.14763 -9.78144 -9.25081 -8.53951 -6.05334 -0.06657 0.29001 0.91568 1.34527 1.36155 1.44729 1.57602 1.78022 1.82677 2.28799 2.53177 2.58068 2.98091 3.10696 3.56052 3.82988 3.91562 3.95857 3.97627 4.08215 4.16132 4.18568 4.33854 4.35906 4.38550 4.38892 4.40121 4.70491 4.72293 5.00942 5.05194 5.18536 5.30293 5.34800 5.41741 5.85866 6.18662 6.25281 6.40778 6.53000 6.99715 7.35529 7.89316 8.63332 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.003185 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.929956 B = 8789.439485 C = 9494.711150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.344 6.344 3 C 0.191 3.809 4 C -0.242 4.242 5 C -0.003 4.003 6 C -0.242 4.242 7 C 0.191 3.809 8 O -0.344 6.344 9 C 0.016 3.984 10 C -0.227 4.227 11 C 0.535 3.465 12 O -0.528 6.528 13 O -0.338 6.338 14 C 0.068 3.932 15 C 0.438 3.562 16 O -0.617 6.617 17 N -0.555 5.555 18 C -0.341 4.341 19 H 0.085 0.915 20 C -0.009 4.009 21 N -0.915 5.915 22 Si 1.002 2.998 23 H -0.268 1.268 24 H -0.267 1.267 25 H -0.270 1.270 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.173 0.827 30 H 0.184 0.816 31 H 0.173 0.827 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.400 0.600 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.277 20.222 9.649 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.144 3.856 4 C -0.260 4.260 5 C -0.020 4.020 6 C -0.260 4.260 7 C 0.144 3.856 8 O -0.257 6.257 9 C -0.077 4.077 10 C -0.229 4.229 11 C 0.379 3.621 12 O -0.417 6.417 13 O -0.253 6.253 14 C -0.009 4.009 15 C 0.225 3.775 16 O -0.504 6.504 17 N -0.192 5.192 18 C -0.470 4.470 19 H 0.103 0.897 20 C -0.209 4.209 21 N -0.555 5.555 22 Si 0.824 3.176 23 H -0.193 1.193 24 H -0.192 1.192 25 H -0.195 1.195 26 H 0.130 0.870 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.191 0.809 30 H 0.201 0.799 31 H 0.191 0.809 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.234 0.766 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.078 19.912 9.334 25.586 hybrid contribution 0.614 -0.923 -0.161 1.120 sum -12.463 18.989 9.173 24.496 Atomic orbital electron populations 1.23527 0.74653 1.05971 1.03548 1.86045 1.25178 1.27099 1.87393 1.18763 0.88730 0.86474 0.91670 1.21483 1.01870 0.90549 1.12120 1.21447 0.93391 0.98393 0.88796 1.21484 0.95347 0.97072 1.12120 1.18762 0.83320 0.91879 0.91677 1.86046 1.17433 1.34839 1.87398 1.23526 1.00233 0.80393 1.03546 1.17697 0.91356 0.89488 1.24391 1.21259 0.76148 0.83664 0.81025 1.90771 1.53863 1.63465 1.33618 1.86730 1.64430 1.39799 1.34304 1.22571 0.96714 0.85782 0.95851 1.19957 0.84003 0.83507 0.90066 1.90512 1.57541 1.58690 1.43626 1.41717 1.45912 1.22329 1.09236 1.19759 1.33003 1.09399 0.84798 0.89750 1.26188 0.95432 0.95401 1.03912 1.69683 1.35643 1.18311 1.31844 0.84811 0.78815 0.77672 0.76301 1.19296 1.19201 1.19494 0.86956 0.89812 0.90368 0.80937 0.79856 0.80934 0.90369 0.89815 0.86955 0.87841 0.87834 0.76558 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -10.02 9.95 -89.56 -0.89 -10.91 16 3 C 0.19 5.39 6.70 22.85 0.15 5.54 16 4 C -0.24 -4.20 9.02 22.34 0.20 -4.00 16 5 C 0.00 -0.04 10.02 22.27 0.22 0.19 16 6 C -0.24 -4.20 9.02 22.34 0.20 -4.00 16 7 C 0.19 5.39 6.70 22.85 0.15 5.54 16 8 O -0.34 -10.01 9.95 -89.66 -0.89 -10.91 16 9 C 0.02 0.26 9.81 113.37 1.11 1.37 16 10 C -0.23 -7.88 5.77 -19.94 -0.12 -8.00 16 11 C 0.53 22.80 6.46 70.14 0.45 23.26 16 12 O -0.53 -23.84 16.90 19.70 0.33 -23.51 16 13 O -0.34 -15.90 9.77 -50.57 -0.49 -16.40 16 14 C 0.07 3.07 5.95 71.24 0.42 3.49 16 15 C 0.44 23.68 7.86 87.66 0.69 24.36 16 16 O -0.62 -38.18 16.08 15.74 0.25 -37.93 16 17 N -0.55 -30.46 5.29 -306.97 -1.62 -32.08 16 18 C -0.34 -20.00 9.68 84.04 0.81 -19.18 16 19 H 0.08 5.23 7.16 -2.91 -0.02 5.21 16 20 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 21 N -0.92 -50.11 13.05 21.66 0.28 -49.83 16 22 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 0.87 7.66 -2.38 -0.02 0.85 16 28 H 0.08 0.94 7.66 -2.39 -0.02 0.92 16 29 H 0.17 1.68 6.28 -2.91 -0.02 1.66 16 30 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 31 H 0.17 1.67 6.28 -2.91 -0.02 1.66 16 32 H 0.08 0.94 7.66 -2.39 -0.02 0.92 16 33 H 0.08 0.87 7.66 -2.38 -0.02 0.85 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 4.25 8.14 -2.38 -0.02 4.23 16 36 H 0.10 4.26 8.14 -2.38 -0.02 4.24 16 37 H 0.40 20.72 7.90 -92.71 -0.73 19.99 16 38 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -85.51 341.34 5.27 -80.24 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.39 Total: 26.19 kcal Atomic # 6 Polarization: 24.06 SS G_CDS: 5.89 Total: 29.95 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -1.34 Total: -81.91 kcal Atomic # 8 Polarization: -97.96 SS G_CDS: -1.69 Total: -99.65 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -85.51 5.27 -80.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235547.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.058 kcal (2) G-P(sol) polarization free energy of solvation -85.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds