Wall clock time and date at job start Fri Apr 10 2020 17:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 116.99817 * 2 1 4 4 C 1.38987 * 119.90205 * 359.97438 * 3 2 1 5 5 C 1.38024 * 120.34415 * 180.02562 * 4 3 2 6 6 C 1.38670 * 120.15926 * 0.02562 * 5 4 3 7 7 O 1.35721 * 120.10436 * 179.97438 * 6 5 4 8 8 C 1.42906 * 116.99463 * 0.02562 * 7 6 5 9 9 C 1.40149 * 119.80016 * 359.97139 * 6 5 4 10 10 C 1.47406 * 120.17145 * 180.02562 * 9 6 5 11 11 O 1.21516 * 119.99949 * 359.72768 * 10 9 6 12 12 O 1.34754 * 120.00035 * 179.97438 * 10 9 6 13 13 C 1.45198 * 116.99852 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46859 * 180.02562 * 13 12 10 15 15 O 1.21293 * 120.00025 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00189 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00219 * 179.97438 * 16 14 13 18 18 H 1.07995 * 119.99552 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99752 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00034 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99680 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46971 * 60.00187 * 21 19 17 23 23 H 1.48496 * 109.46712 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46920 * 300.00137 * 21 19 17 25 25 C 1.38214 * 119.90214 * 180.26161 * 3 2 1 26 26 H 1.08998 * 109.46898 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47115 * 299.99946 * 1 2 3 28 28 H 1.09001 * 109.47347 * 60.00050 * 1 2 3 29 29 H 1.07993 * 119.82277 * 0.02562 * 4 3 2 30 30 H 1.08012 * 119.91764 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46794 * 60.00225 * 8 7 6 32 32 H 1.08993 * 109.46727 * 179.97438 * 8 7 6 33 33 H 1.08995 * 109.47149 * 300.00495 * 8 7 6 34 34 H 1.09003 * 109.46918 * 299.99895 * 13 12 10 35 35 H 1.08998 * 109.47370 * 60.00386 * 13 12 10 36 36 H 0.97006 * 119.99875 * 359.97438 * 16 14 13 37 37 H 0.97004 * 119.99443 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.07587 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2874 2.3760 -0.0005 5 6 1.9044 3.6107 -0.0011 6 6 3.2884 3.6978 -0.0016 7 8 3.8940 4.9124 -0.0027 8 6 3.0439 6.0611 -0.0026 9 6 4.0600 2.5278 -0.0010 10 6 5.5317 2.6109 -0.0010 11 8 6.0790 3.6958 -0.0065 12 8 6.2702 1.4838 0.0001 13 6 7.7136 1.6414 0.0006 14 6 8.3672 0.2835 0.0012 15 8 7.6837 -0.7185 0.0017 16 7 9.7111 0.1825 0.0023 17 6 10.3057 -1.0529 0.0033 18 1 9.6971 -1.9450 0.0037 19 6 11.6914 -1.1569 0.0039 20 7 12.4318 -0.0713 0.0039 21 14 12.5015 -2.8402 0.0046 22 1 12.0859 -3.5900 -1.2079 23 1 13.9777 -2.6789 0.0058 24 1 12.0849 -3.5895 1.2172 25 6 3.4267 1.2817 -0.0055 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2092 2.3143 -0.0005 30 1 1.3079 4.5111 -0.0019 31 1 2.4155 6.0479 0.8879 32 1 3.6538 6.9644 -0.0030 33 1 2.4140 6.0470 -0.8920 34 1 8.0193 2.1910 -0.8897 35 1 8.0186 2.1922 0.8903 36 1 10.2578 0.9838 0.0023 37 1 13.3991 -0.1440 0.0046 38 1 4.0146 0.3758 -0.0102 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731238721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:28 Heat of formation + Delta-G solvation = -182.341404 kcal Electronic energy + Delta-G solvation = -24597.001469 eV Core-core repulsion = 20598.278733 eV Total energy + Delta-G solvation = -3998.722737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.00608 -41.04781 -40.09967 -39.84762 -37.44880 -37.29334 -36.03567 -33.43492 -32.81882 -30.88111 -30.05366 -28.31502 -27.78936 -26.69851 -25.12379 -23.25057 -22.04639 -21.43309 -20.08088 -19.73948 -18.81287 -18.41871 -17.93359 -17.74893 -17.36850 -17.04864 -16.81215 -16.44351 -16.40197 -15.82141 -15.67229 -15.67053 -15.36796 -14.65207 -14.43207 -14.06674 -13.78122 -13.60013 -13.54477 -13.49708 -13.27360 -12.93279 -12.53537 -12.49194 -12.46806 -12.12510 -12.03624 -11.86299 -11.57694 -11.53463 -11.39695 -10.52376 -10.33267 -10.12659 -8.88414 -8.52503 -6.03495 -0.49718 0.28204 1.31146 1.37119 1.40910 1.43952 1.55744 1.86176 2.21059 2.29090 2.39661 2.58130 3.03041 3.12692 3.55576 3.63342 3.87108 3.94914 4.07051 4.14206 4.18726 4.20671 4.36878 4.43154 4.43721 4.47731 4.59762 4.71622 4.77878 4.81968 5.00257 5.12063 5.24423 5.32870 5.36431 5.88220 6.27808 6.43428 6.45890 6.64118 7.01921 7.38583 7.92358 8.64494 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.002910 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.888101 B = 9620.648292 C =11095.784691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.338 6.338 3 C 0.073 3.927 4 C -0.111 4.111 5 C -0.170 4.170 6 C 0.150 3.850 7 O -0.316 6.316 8 C 0.010 3.990 9 C -0.148 4.148 10 C 0.504 3.496 11 O -0.512 6.512 12 O -0.341 6.341 13 C 0.072 3.928 14 C 0.437 3.563 15 O -0.617 6.617 16 N -0.556 5.556 17 C -0.340 4.340 18 H 0.085 0.915 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 1.000 3.000 22 H -0.269 1.269 23 H -0.268 1.268 24 H -0.269 1.269 25 C -0.074 4.074 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.180 0.820 30 H 0.182 0.818 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.400 0.600 37 H 0.281 0.719 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.037 11.255 -0.007 28.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.253 6.253 3 C 0.028 3.972 4 C -0.129 4.129 5 C -0.188 4.188 6 C 0.102 3.898 7 O -0.229 6.229 8 C -0.083 4.083 9 C -0.150 4.150 10 C 0.350 3.650 11 O -0.402 6.402 12 O -0.257 6.257 13 C -0.005 4.005 14 C 0.224 3.776 15 O -0.503 6.503 16 N -0.194 5.194 17 C -0.469 4.469 18 H 0.103 0.897 19 C -0.209 4.209 20 N -0.556 5.556 21 Si 0.822 3.178 22 H -0.194 1.194 23 H -0.192 1.192 24 H -0.194 1.194 25 C -0.093 4.093 26 H 0.131 0.869 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.197 0.803 30 H 0.199 0.801 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.235 0.765 37 H 0.091 0.909 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.789 10.816 -0.010 27.965 hybrid contribution 0.942 -0.139 0.002 0.953 sum -24.846 10.678 -0.008 27.043 Atomic orbital electron populations 1.23430 0.75946 1.05763 1.02801 1.86141 1.23874 1.26055 1.89234 1.18763 0.91165 0.85940 1.01285 1.21707 1.02193 0.90106 0.98883 1.21376 0.91022 1.00516 1.05895 1.19049 0.91677 0.84465 0.94589 1.86335 1.36893 1.12587 1.87070 1.23510 0.96140 0.85569 1.03130 1.18172 0.87836 0.92936 1.16101 1.21338 0.89015 0.81658 0.73019 1.90830 1.73657 1.29222 1.46463 1.86602 1.19755 1.35349 1.84004 1.22528 0.77019 0.95620 1.05318 1.20043 0.83043 0.90323 0.84198 1.90522 1.63570 1.39508 1.56724 1.41719 1.04263 1.09390 1.64019 1.19713 0.90709 0.85648 1.50853 0.89743 1.26155 0.95995 1.03231 0.95549 1.69675 1.06951 1.29882 1.49052 0.84899 0.77094 0.76630 0.79176 1.19437 1.19241 1.19445 1.20522 0.93262 0.96552 0.98983 0.86887 0.90879 0.90873 0.80277 0.80064 0.90461 0.87165 0.90452 0.87624 0.87608 0.76547 0.90905 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.26 16 2 O -0.34 -7.34 10.49 -93.45 -0.98 -8.33 16 3 C 0.07 1.67 6.68 22.44 0.15 1.82 16 4 C -0.11 -1.62 9.02 22.40 0.20 -1.42 16 5 C -0.17 -2.61 9.02 22.32 0.20 -2.41 16 6 C 0.15 3.73 6.70 22.84 0.15 3.89 16 7 O -0.32 -8.08 8.56 -69.47 -0.59 -8.67 16 8 C 0.01 0.13 9.81 113.37 1.11 1.24 16 9 C -0.15 -4.70 5.88 -20.03 -0.12 -4.82 16 10 C 0.50 19.34 7.89 70.24 0.55 19.90 16 11 O -0.51 -20.79 14.94 26.80 0.40 -20.39 16 12 O -0.34 -14.57 9.00 -50.26 -0.45 -15.02 16 13 C 0.07 3.03 5.95 71.24 0.42 3.45 16 14 C 0.44 22.72 7.86 87.66 0.69 23.41 16 15 O -0.62 -36.91 16.08 15.73 0.25 -36.65 16 16 N -0.56 -29.86 5.29 -306.98 -1.62 -31.48 16 17 C -0.34 -19.73 9.68 84.04 0.81 -18.91 16 18 H 0.08 5.16 7.16 -2.91 -0.02 5.14 16 19 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 20 N -0.92 -49.86 13.05 21.66 0.28 -49.57 16 21 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 C -0.07 -2.22 9.55 22.64 0.22 -2.00 16 26 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.45 7.65 -2.38 -0.02 0.44 16 28 H 0.07 0.45 7.65 -2.39 -0.02 0.44 16 29 H 0.18 1.06 6.27 -2.91 -0.02 1.04 16 30 H 0.18 1.24 6.29 -2.90 -0.02 1.22 16 31 H 0.08 0.62 7.66 -2.39 -0.02 0.60 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 0.62 7.66 -2.39 -0.02 0.60 16 34 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 35 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 36 H 0.40 20.22 7.90 -92.70 -0.73 19.49 16 37 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 38 H 0.13 4.55 7.61 -2.91 -0.02 4.53 16 Total: -1.00 -79.94 338.36 5.68 -74.26 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.39 Total: 25.39 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 5.98 Total: 25.40 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -1.34 Total: -81.05 kcal Atomic # 8 Polarization: -87.69 SS G_CDS: -1.37 Total: -89.06 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -79.94 5.68 -74.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.081 kcal (2) G-P(sol) polarization free energy of solvation -79.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds