Wall clock time and date at job start Fri Apr 10 2020 17:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35716 * 117.00197 * 2 1 4 4 C 1.39175 * 119.85834 * 0.02562 * 3 2 1 5 5 C 1.36548 * 120.37515 * 180.02562 * 4 3 2 6 6 C 1.39890 * 120.08335 * 359.97438 * 5 4 3 7 7 C 1.47201 * 120.14166 * 179.97438 * 6 5 4 8 8 O 1.21656 * 120.00019 * 149.54328 * 7 6 5 9 9 N 1.34770 * 120.00109 * 329.53542 * 7 6 5 10 10 C 1.36930 * 120.00422 * 186.86619 * 9 7 6 11 11 H 1.08003 * 119.99822 * 352.73534 * 10 9 7 12 12 C 1.38994 * 120.00356 * 172.73998 * 10 9 7 13 13 N 1.31400 * 120.00454 * 31.42030 * 12 10 9 14 14 Si 1.86806 * 119.99948 * 211.41905 * 12 10 9 15 15 H 1.48504 * 109.46833 * 94.96550 * 14 12 10 16 16 H 1.48497 * 109.47279 * 214.96475 * 14 12 10 17 17 H 1.48499 * 109.47151 * 334.96473 * 14 12 10 18 18 C 1.46503 * 119.99981 * 6.86807 * 9 7 6 19 19 C 1.50701 * 109.47427 * 99.48226 * 18 9 7 20 20 O 1.20829 * 119.99594 * 0.02562 * 19 18 9 21 21 O 1.34222 * 120.00207 * 180.02562 * 19 18 9 22 22 C 1.40387 * 119.71807 * 0.02562 * 6 5 4 23 23 O 1.35653 * 120.18451 * 179.97438 * 22 6 5 24 24 C 1.42906 * 116.99765 * 179.97438 * 23 22 6 25 25 C 1.38463 * 119.62772 * 0.24475 * 22 6 5 26 26 H 1.08994 * 109.47136 * 59.99377 * 1 2 3 27 27 H 1.08997 * 109.47546 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46540 * 300.00332 * 1 2 3 29 29 H 1.07995 * 119.81119 * 359.97438 * 4 3 2 30 30 H 1.07997 * 119.95989 * 179.97438 * 5 4 3 31 31 H 0.96998 * 120.00275 * 180.02562 * 13 12 10 32 32 H 1.09005 * 109.47183 * 219.48452 * 18 9 7 33 33 H 1.08998 * 109.47158 * 339.48334 * 18 9 7 34 34 H 0.96698 * 117.00290 * 179.97438 * 21 19 18 35 35 H 1.08997 * 109.47065 * 180.02562 * 24 23 22 36 36 H 1.08992 * 109.47113 * 59.99630 * 24 23 22 37 37 H 1.09004 * 109.46759 * 299.99685 * 24 23 22 38 38 H 1.07994 * 120.04297 * 179.72832 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2843 2.3746 0.0005 5 6 1.8933 3.5968 0.0000 6 6 3.2894 3.6846 -0.0005 7 6 3.9473 5.0014 -0.0017 8 8 5.0317 5.1401 0.5319 9 7 3.3482 6.0534 -0.5939 10 6 4.0178 7.2412 -0.7193 11 1 4.9777 7.3730 -0.2423 12 6 3.4620 8.2774 -1.4606 13 7 2.1567 8.4163 -1.5200 14 14 4.5708 9.4728 -2.3723 15 1 4.7307 9.0249 -3.7791 16 1 3.9627 10.8274 -2.3501 17 1 5.9005 9.5163 -1.7125 18 6 1.9806 5.9261 -1.1035 19 6 1.0164 6.5189 -0.1085 20 8 1.4294 6.9988 0.9207 21 8 -0.3009 6.5136 -0.3653 22 6 4.0605 2.5114 -0.0011 23 8 5.4150 2.5855 -0.0021 24 6 6.1324 1.3495 -0.0021 25 6 3.4307 1.2783 -0.0062 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 0.2062 2.3119 0.0005 30 1 1.2964 4.4968 0.0000 31 1 1.7689 9.1392 -2.0375 32 1 1.8955 6.4564 -2.0521 33 1 1.7455 4.8725 -1.2539 34 1 -0.8801 6.9048 0.3029 35 1 7.2035 1.5511 -0.0025 36 1 5.8696 0.7770 -0.8915 37 1 5.8710 0.7779 0.8885 38 1 4.0173 0.3716 -0.0111 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737921219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:46 Heat of formation + Delta-G solvation = -115.982434 kcal Electronic energy + Delta-G solvation = -26597.773664 eV Core-core repulsion = 22601.928468 eV Total energy + Delta-G solvation = -3995.845196 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63455 -39.46271 -38.85592 -37.92170 -36.10597 -35.23398 -34.47043 -32.07847 -30.63350 -29.81943 -28.00158 -27.26513 -27.03866 -25.00246 -22.69006 -21.89417 -21.09145 -19.70770 -18.43359 -17.15477 -17.08732 -16.78526 -16.38464 -15.98225 -15.89271 -15.57824 -15.32147 -15.20131 -14.74840 -14.54325 -14.11466 -13.69287 -13.34041 -13.21930 -12.82547 -12.46991 -12.37070 -12.22978 -11.90323 -11.68426 -11.51319 -11.40593 -11.28631 -10.99242 -10.67151 -10.51407 -10.45576 -10.30418 -10.00801 -9.58241 -8.89844 -8.53660 -8.38513 -8.03089 -7.77301 -6.55433 -3.76569 1.32933 1.58767 3.15178 3.15962 3.25855 3.32987 3.37011 3.51466 3.60108 3.96010 4.12427 4.37423 4.69149 4.83985 5.04858 5.06793 5.08294 5.16679 5.19166 5.31352 5.34877 5.38688 5.53360 5.63699 5.68816 5.73865 5.85069 6.22833 6.36835 6.49555 6.53821 6.67499 6.70901 7.33193 7.46696 7.52229 7.65312 8.00677 8.38201 9.00668 9.09780 9.29962 9.89256 10.53338 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.005517 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.918368 B = 5073.638960 C = 6476.677595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.167 3.833 4 C -0.246 4.246 5 C -0.047 4.047 6 C -0.169 4.169 7 C 0.498 3.502 8 O -0.560 6.560 9 N -0.424 5.424 10 C -0.295 4.295 11 H 0.114 0.886 12 C 0.033 3.967 13 N -0.873 5.873 14 Si 0.923 3.077 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.267 1.267 18 C 0.107 3.893 19 C 0.489 3.511 20 O -0.501 6.501 21 O -0.533 6.533 22 C 0.207 3.793 23 O -0.276 6.276 24 C 0.022 3.978 25 C -0.252 4.252 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.131 0.869 30 H 0.147 0.853 31 H 0.273 0.727 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.392 0.608 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.916 -14.393 -1.466 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.121 3.879 4 C -0.265 4.265 5 C -0.066 4.066 6 C -0.173 4.173 7 C 0.288 3.712 8 O -0.443 6.443 9 N -0.143 5.143 10 C -0.422 4.422 11 H 0.132 0.868 12 C -0.170 4.170 13 N -0.513 5.513 14 Si 0.749 3.251 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.191 1.191 18 C -0.019 4.019 19 C 0.329 3.671 20 O -0.386 6.386 21 O -0.345 6.345 22 C 0.159 3.841 23 O -0.187 6.187 24 C -0.073 4.073 25 C -0.271 4.271 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.149 0.851 30 H 0.164 0.836 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.248 0.752 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.859 -14.216 -1.281 15.078 hybrid contribution -0.553 0.954 0.006 1.103 sum -5.412 -13.262 -1.276 14.380 Atomic orbital electron populations 1.23070 0.78307 1.03666 1.01792 1.85979 1.21497 1.27196 1.88408 1.18756 0.91420 0.83941 0.93741 1.20776 1.00093 0.91872 1.13767 1.21404 0.93266 0.98215 0.93675 1.19554 0.92538 0.93416 1.11803 1.17353 0.87049 0.83214 0.83548 1.90654 1.22523 1.84384 1.46690 1.43441 1.09626 1.10682 1.50515 1.19769 1.03198 0.90082 1.29132 0.86789 1.25200 0.95827 0.98101 0.97848 1.69871 1.10410 1.32533 1.38439 0.85958 0.80707 0.78475 0.79987 1.20212 1.21205 1.19105 1.21889 0.81545 1.00713 0.97732 1.23706 0.80530 0.76459 0.86372 1.90633 1.77906 1.42220 1.27841 1.84533 1.20109 1.76953 1.52876 1.18601 0.82955 0.91583 0.90991 1.86395 1.14378 1.31154 1.86756 1.23117 0.97274 0.85950 1.00977 1.20247 0.92512 0.97165 1.17201 0.92333 0.88444 0.92457 0.85121 0.83606 0.91649 0.85079 0.87921 0.75171 0.88210 0.92804 0.92771 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.80 101.05 0.99 1.22 16 2 O -0.32 -4.03 10.48 -18.85 -0.20 -4.23 16 3 C 0.17 2.49 6.69 -39.05 -0.26 2.23 16 4 C -0.25 -3.69 8.96 -39.84 -0.36 -4.04 16 5 C -0.05 -0.86 7.42 -39.57 -0.29 -1.15 16 6 C -0.17 -3.62 5.60 -104.83 -0.59 -4.20 16 7 C 0.50 13.03 7.29 -12.62 -0.09 12.94 16 8 O -0.56 -16.42 15.36 -13.88 -0.21 -16.64 16 9 N -0.42 -11.13 2.22 -117.39 -0.26 -11.39 16 10 C -0.30 -8.33 9.06 -14.99 -0.14 -8.47 16 11 H 0.11 3.42 7.34 -52.48 -0.39 3.04 16 12 C 0.03 0.87 5.01 -17.46 -0.09 0.78 16 13 N -0.87 -22.56 8.97 55.50 0.50 -22.06 16 14 Si 0.92 20.63 29.65 -169.99 -5.04 15.59 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 C 0.11 2.41 4.80 -5.19 -0.02 2.38 16 19 C 0.49 11.02 4.55 36.01 0.16 11.19 16 20 O -0.50 -13.34 16.84 -18.75 -0.32 -13.65 16 21 O -0.53 -9.51 13.42 -39.24 -0.53 -10.04 16 22 C 0.21 3.96 6.67 -38.69 -0.26 3.70 16 23 O -0.28 -5.32 9.01 -37.77 -0.34 -5.66 16 24 C 0.02 0.28 9.81 101.05 0.99 1.27 16 25 C -0.25 -3.94 8.97 -39.32 -0.35 -4.30 16 26 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 29 H 0.13 1.55 6.26 -52.49 -0.33 1.22 16 30 H 0.15 2.73 3.25 -52.49 -0.17 2.56 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.13 3.05 6.12 -51.93 -0.32 2.73 16 33 H 0.10 2.00 3.93 -52.62 -0.21 1.79 16 34 H 0.39 5.33 9.10 45.56 0.41 5.75 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 37 H 0.05 0.60 7.68 -51.93 -0.40 0.20 16 38 H 0.14 1.79 6.31 -52.49 -0.33 1.46 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -35.97 319.43 -4.78 -40.75 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -2.90 Total: 8.97 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: -0.30 Total: 13.54 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.24 Total: -33.45 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -1.59 Total: -50.22 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.04 Total: 15.59 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.97 -4.78 -40.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737921219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.230 kcal (2) G-P(sol) polarization free energy of solvation -35.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds