Wall clock time and date at job start Fri Apr 10 2020 17:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35982 * 117.00233 * 2 1 4 4 C 1.38984 * 119.90020 * 359.97438 * 3 2 1 5 5 C 1.38062 * 120.34338 * 180.02562 * 4 3 2 6 6 C 1.38653 * 120.15502 * 0.02562 * 5 4 3 7 7 O 1.35732 * 120.09630 * 179.97438 * 6 5 4 8 8 C 1.42898 * 116.99994 * 0.02562 * 7 6 5 9 9 C 1.40158 * 119.80404 * 359.97311 * 6 5 4 10 10 C 1.47425 * 120.17137 * 179.97438 * 9 6 5 11 11 O 1.21630 * 120.00376 * 306.50363 * 10 9 6 12 12 N 1.34782 * 119.99971 * 126.49791 * 10 9 6 13 13 C 1.36896 * 120.00014 * 4.01431 * 12 10 9 14 14 H 1.07994 * 120.00020 * 15.50654 * 13 12 10 15 15 C 1.39028 * 120.00112 * 195.51469 * 13 12 10 16 16 N 1.31384 * 119.99429 * 13.39524 * 15 13 12 17 17 Si 1.86792 * 120.00149 * 193.39651 * 15 13 12 18 18 H 1.48502 * 109.47208 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47286 * 119.99480 * 17 15 13 20 20 H 1.48497 * 109.47431 * 239.99872 * 17 15 13 21 21 C 1.46502 * 119.99771 * 184.01208 * 12 10 9 22 22 C 1.50693 * 109.47420 * 85.57176 * 21 12 10 23 23 O 1.20830 * 120.00077 * 0.02562 * 22 21 12 24 24 O 1.34231 * 120.00226 * 179.97438 * 22 21 12 25 25 C 1.38226 * 119.90759 * 180.23067 * 3 2 1 26 26 H 1.09000 * 109.47223 * 300.00135 * 1 2 3 27 27 H 1.08996 * 109.47022 * 59.99848 * 1 2 3 28 28 H 1.09000 * 109.46963 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.83132 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.91720 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.47432 * 59.99704 * 8 7 6 32 32 H 1.08999 * 109.47163 * 179.97438 * 8 7 6 33 33 H 1.08993 * 109.47119 * 299.99533 * 8 7 6 34 34 H 0.97004 * 119.99423 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.46896 * 205.57466 * 21 12 10 36 36 H 1.09002 * 109.47038 * 325.56979 * 21 12 10 37 37 H 0.96703 * 117.00210 * 180.02562 * 24 22 21 38 38 H 1.07996 * 120.07607 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2874 2.3759 -0.0005 5 6 1.9048 3.6108 -0.0011 6 6 3.2885 3.6978 -0.0016 7 8 3.8942 4.9125 -0.0027 8 6 3.0442 6.0612 -0.0026 9 6 4.0601 2.5277 -0.0010 10 6 5.5320 2.6107 -0.0022 11 8 6.1034 3.2698 -0.8499 12 7 6.2446 1.9564 0.9363 13 6 5.6078 1.1491 1.8400 14 1 4.5904 0.8347 1.6602 15 6 6.2708 0.7340 2.9894 16 7 7.3949 1.3139 3.3448 17 14 5.5633 -0.6478 4.0282 18 1 4.2991 -1.1299 3.4161 19 1 6.5382 -1.7660 4.0947 20 1 5.2905 -0.1467 5.3992 21 6 7.7007 2.1092 0.9891 22 6 8.0486 3.3303 1.8006 23 8 7.1704 4.0038 2.2856 24 8 9.3341 3.6694 1.9856 25 6 3.4269 1.2817 -0.0048 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.2092 2.3144 -0.0005 30 1 1.3083 4.5112 -0.0019 31 1 2.4156 6.0481 0.8878 32 1 3.6542 6.9645 -0.0030 33 1 2.4145 6.0472 -0.8921 34 1 7.8576 1.0240 4.1466 35 1 8.1420 1.2269 1.4527 36 1 8.0911 2.2217 -0.0224 37 1 9.5079 4.4607 2.5137 38 1 4.0148 0.3757 -0.0082 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738043619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:51 Heat of formation + Delta-G solvation = -143.829599 kcal Electronic energy + Delta-G solvation = -26628.921800 eV Core-core repulsion = 22631.869060 eV Total energy + Delta-G solvation = -3997.052740 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.23771 -39.14878 -38.62462 -37.83913 -35.74986 -35.07538 -34.46797 -31.61510 -31.03066 -29.42570 -27.90467 -26.98611 -26.59586 -24.94154 -22.87782 -21.74979 -20.74106 -19.40001 -18.37603 -17.35692 -16.92348 -16.62399 -16.27114 -15.99289 -15.50363 -15.38871 -15.18282 -14.50830 -14.43511 -14.32684 -14.22462 -13.73319 -13.43588 -12.91094 -12.56644 -12.52899 -12.31729 -12.07881 -11.71184 -11.53221 -11.41804 -11.32083 -11.29376 -10.93681 -10.69518 -10.42334 -10.34550 -10.18952 -10.03502 -9.57452 -9.01244 -8.74556 -8.38602 -7.95096 -7.32587 -6.47468 -3.97548 1.48474 1.87176 3.09219 3.20462 3.25847 3.46746 3.62294 3.77295 3.78815 3.94359 4.17092 4.45098 4.73964 4.96399 5.07688 5.12372 5.21775 5.23032 5.32715 5.41263 5.50331 5.58257 5.72303 5.81505 5.95277 6.18778 6.36903 6.39269 6.59199 6.64920 6.69821 6.84192 6.95563 7.37312 7.55053 7.62751 7.70434 7.89632 8.27093 8.98696 9.25322 9.36485 9.76004 10.58206 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.006945 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.266231 B = 4030.629876 C = 5735.390644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.078 3.922 4 C -0.165 4.165 5 C -0.183 4.183 6 C 0.132 3.868 7 O -0.292 6.292 8 C 0.029 3.971 9 C -0.070 4.070 10 C 0.514 3.486 11 O -0.585 6.585 12 N -0.420 5.420 13 C -0.329 4.329 14 H 0.116 0.884 15 C 0.034 3.966 16 N -0.880 5.880 17 Si 0.928 3.072 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.282 1.282 21 C 0.155 3.845 22 C 0.500 3.500 23 O -0.513 6.513 24 O -0.534 6.534 25 C -0.077 4.077 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.272 0.728 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.389 0.611 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.480 0.567 -3.588 10.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.033 3.967 4 C -0.184 4.184 5 C -0.202 4.202 6 C 0.086 3.914 7 O -0.204 6.204 8 C -0.067 4.067 9 C -0.074 4.074 10 C 0.303 3.697 11 O -0.470 6.470 12 N -0.138 5.138 13 C -0.457 4.457 14 H 0.133 0.867 15 C -0.169 4.169 16 N -0.519 5.519 17 Si 0.754 3.246 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.208 1.208 21 C 0.030 3.970 22 C 0.341 3.659 23 O -0.399 6.399 24 O -0.345 6.345 25 C -0.096 4.096 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.153 0.847 36 H 0.099 0.901 37 H 0.245 0.755 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.079 0.547 -3.935 9.910 hybrid contribution -0.819 0.259 1.402 1.644 sum -9.897 0.807 -2.534 10.248 Atomic orbital electron populations 1.22952 0.79349 1.03357 1.00874 1.86088 1.20509 1.26793 1.89724 1.18679 0.91988 0.84004 1.01985 1.20927 0.99386 0.91684 1.06408 1.20812 0.92783 0.98185 1.08416 1.18821 0.90271 0.85118 0.97229 1.86280 1.34382 1.11641 1.88080 1.22996 0.95595 0.87610 1.00492 1.19017 0.94436 0.90183 1.03768 1.17653 0.85755 0.81402 0.84857 1.90654 1.71102 1.44327 1.40952 1.43343 1.04073 1.39070 1.27310 1.20184 1.00584 1.24048 1.00845 0.86682 1.25279 0.96354 0.98623 0.96661 1.69746 1.17517 1.39493 1.25169 0.85822 0.79253 0.80131 0.79384 1.18826 1.20365 1.20776 1.20605 0.83115 0.95865 0.97411 1.23705 0.78847 0.85103 0.78211 1.90575 1.49085 1.52711 1.47509 1.84528 1.31476 1.48558 1.69939 1.20476 0.91109 0.97618 1.00380 0.93040 0.93124 0.88707 0.85647 0.85345 0.93133 0.88631 0.93179 0.91678 0.84659 0.90126 0.75534 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -5.00 10.49 -19.69 -0.21 -5.20 16 3 C 0.08 1.36 6.68 -39.31 -0.26 1.10 16 4 C -0.16 -2.54 9.03 -39.37 -0.36 -2.90 16 5 C -0.18 -3.02 9.02 -39.49 -0.36 -3.38 16 6 C 0.13 2.76 6.68 -38.71 -0.26 2.51 16 7 O -0.29 -6.22 9.67 -23.09 -0.22 -6.44 16 8 C 0.03 0.41 9.81 101.05 0.99 1.40 16 9 C -0.07 -1.61 5.09 -104.86 -0.53 -2.15 16 10 C 0.51 13.45 6.67 -12.52 -0.08 13.36 16 11 O -0.59 -16.45 16.35 1.06 0.02 -16.43 16 12 N -0.42 -10.95 2.15 -117.32 -0.25 -11.21 16 13 C -0.33 -8.45 8.80 -15.00 -0.13 -8.59 16 14 H 0.12 2.83 4.42 -52.49 -0.23 2.60 16 15 C 0.03 0.86 5.10 -17.45 -0.09 0.77 16 16 N -0.88 -22.82 8.83 55.50 0.49 -22.33 16 17 Si 0.93 19.74 29.57 -169.99 -5.03 14.71 16 18 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 21 C 0.16 3.83 5.19 -5.20 -0.03 3.81 16 22 C 0.50 12.60 6.47 36.00 0.23 12.83 16 23 O -0.51 -14.68 16.97 -18.75 -0.32 -14.99 16 24 O -0.53 -11.06 13.42 -39.26 -0.53 -11.59 16 25 C -0.08 -1.55 7.44 -39.01 -0.29 -1.84 16 26 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 27 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.13 1.48 6.27 -52.49 -0.33 1.15 16 30 H 0.13 1.68 6.29 -52.48 -0.33 1.35 16 31 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 34 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.14 3.30 6.11 -51.93 -0.32 2.98 16 36 H 0.08 1.87 7.50 -51.93 -0.39 1.48 16 37 H 0.39 6.29 9.10 45.56 0.41 6.70 16 38 H 0.15 2.99 7.05 -52.49 -0.37 2.62 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -35.07 326.55 -4.42 -39.50 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -3.12 Total: 10.83 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: -0.17 Total: 18.24 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.24 Total: -33.53 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -1.26 Total: -54.66 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.07 -4.42 -39.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738043619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.334 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds