Wall clock time and date at job start Fri Apr 10 2020 17:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35982 * 117.00233 * 2 1 4 4 C 1.38984 * 119.90020 * 359.97438 * 3 2 1 5 5 C 1.38062 * 120.34338 * 180.02562 * 4 3 2 6 6 C 1.38653 * 120.15502 * 0.02562 * 5 4 3 7 7 O 1.35732 * 120.09630 * 179.97438 * 6 5 4 8 8 C 1.42898 * 116.99994 * 0.02562 * 7 6 5 9 9 C 1.40158 * 119.80404 * 359.97311 * 6 5 4 10 10 C 1.47425 * 120.17137 * 179.97438 * 9 6 5 11 11 O 1.21630 * 120.00376 * 306.50363 * 10 9 6 12 12 N 1.34782 * 119.99971 * 126.49791 * 10 9 6 13 13 C 1.36896 * 120.00014 * 4.01431 * 12 10 9 14 14 H 1.07994 * 120.00020 * 15.50654 * 13 12 10 15 15 C 1.39028 * 120.00112 * 195.51469 * 13 12 10 16 16 N 1.31384 * 119.99429 * 13.39524 * 15 13 12 17 17 Si 1.86792 * 120.00149 * 193.39651 * 15 13 12 18 18 H 1.48502 * 109.47208 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47286 * 119.99480 * 17 15 13 20 20 H 1.48497 * 109.47431 * 239.99872 * 17 15 13 21 21 C 1.46502 * 119.99771 * 184.01208 * 12 10 9 22 22 C 1.50693 * 109.47420 * 85.57176 * 21 12 10 23 23 O 1.20830 * 120.00077 * 0.02562 * 22 21 12 24 24 O 1.34231 * 120.00226 * 179.97438 * 22 21 12 25 25 C 1.38226 * 119.90759 * 180.23067 * 3 2 1 26 26 H 1.09000 * 109.47223 * 300.00135 * 1 2 3 27 27 H 1.08996 * 109.47022 * 59.99848 * 1 2 3 28 28 H 1.09000 * 109.46963 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.83132 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.91720 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.47432 * 59.99704 * 8 7 6 32 32 H 1.08999 * 109.47163 * 179.97438 * 8 7 6 33 33 H 1.08993 * 109.47119 * 299.99533 * 8 7 6 34 34 H 0.97004 * 119.99423 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.46896 * 205.57466 * 21 12 10 36 36 H 1.09002 * 109.47038 * 325.56979 * 21 12 10 37 37 H 0.96703 * 117.00210 * 180.02562 * 24 22 21 38 38 H 1.07996 * 120.07607 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2874 2.3759 -0.0005 5 6 1.9048 3.6108 -0.0011 6 6 3.2885 3.6978 -0.0016 7 8 3.8942 4.9125 -0.0027 8 6 3.0442 6.0612 -0.0026 9 6 4.0601 2.5277 -0.0010 10 6 5.5320 2.6107 -0.0022 11 8 6.1034 3.2698 -0.8499 12 7 6.2446 1.9564 0.9363 13 6 5.6078 1.1491 1.8400 14 1 4.5904 0.8347 1.6602 15 6 6.2708 0.7340 2.9894 16 7 7.3949 1.3139 3.3448 17 14 5.5633 -0.6478 4.0282 18 1 4.2991 -1.1299 3.4161 19 1 6.5382 -1.7660 4.0947 20 1 5.2905 -0.1467 5.3992 21 6 7.7007 2.1092 0.9891 22 6 8.0486 3.3303 1.8006 23 8 7.1704 4.0038 2.2856 24 8 9.3341 3.6694 1.9856 25 6 3.4269 1.2817 -0.0048 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.2092 2.3144 -0.0005 30 1 1.3083 4.5112 -0.0019 31 1 2.4156 6.0481 0.8878 32 1 3.6542 6.9645 -0.0030 33 1 2.4145 6.0472 -0.8921 34 1 7.8576 1.0240 4.1466 35 1 8.1420 1.2269 1.4527 36 1 8.0911 2.2217 -0.0224 37 1 9.5079 4.4607 2.5137 38 1 4.0148 0.3757 -0.0082 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738043619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:51 Heat of formation + Delta-G solvation = -169.568224 kcal Electronic energy + Delta-G solvation = -26630.037910 eV Core-core repulsion = 22631.869060 eV Total energy + Delta-G solvation = -3998.168850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.74064 -40.96345 -39.97757 -39.62781 -37.12516 -36.99727 -36.43928 -33.52527 -32.53895 -30.71196 -29.66764 -28.15110 -27.70600 -26.84575 -24.45258 -23.19441 -22.44424 -21.21352 -19.98742 -18.84722 -18.68214 -18.27572 -17.76236 -17.62267 -17.26949 -16.71176 -16.37054 -16.24974 -16.16845 -16.10372 -15.62051 -15.23637 -15.12789 -14.59477 -14.12624 -13.79714 -13.66095 -13.41438 -13.37439 -13.33381 -13.15657 -12.66504 -12.51052 -12.41791 -12.30689 -12.17408 -12.04855 -11.77540 -11.56762 -11.27248 -10.99431 -10.62372 -10.03432 -9.80135 -8.68389 -8.38712 -5.95344 0.05579 0.47943 1.38756 1.46019 1.60244 1.72492 1.83600 2.22085 2.37797 2.47161 2.57022 2.71714 3.01021 3.18638 3.76012 3.87388 4.19975 4.21232 4.31457 4.39914 4.40842 4.49223 4.51193 4.53939 4.67353 4.79486 4.81214 4.86462 4.92644 4.97206 5.21901 5.28005 5.43573 5.57504 5.63779 5.90449 6.33395 6.43441 6.60928 7.03867 7.35670 7.43853 7.82292 8.67378 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.006945 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.266231 B = 4030.629876 C = 5735.390644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.082 3.918 4 C -0.145 4.145 5 C -0.168 4.168 6 C 0.109 3.891 7 O -0.338 6.338 8 C 0.018 3.982 9 C -0.114 4.114 10 C 0.503 3.497 11 O -0.622 6.622 12 N -0.430 5.430 13 C -0.347 4.347 14 H 0.121 0.879 15 C -0.007 4.007 16 N -0.903 5.903 17 Si 0.995 3.005 18 H -0.256 1.256 19 H -0.268 1.268 20 H -0.286 1.286 21 C 0.150 3.850 22 C 0.505 3.495 23 O -0.553 6.553 24 O -0.519 6.519 25 C -0.093 4.093 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.174 0.826 30 H 0.170 0.830 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.274 0.726 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.411 0.589 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.637 0.142 -3.111 13.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.037 3.963 4 C -0.164 4.164 5 C -0.186 4.186 6 C 0.062 3.938 7 O -0.252 6.252 8 C -0.076 4.076 9 C -0.118 4.118 10 C 0.294 3.706 11 O -0.510 6.510 12 N -0.147 5.147 13 C -0.474 4.474 14 H 0.139 0.861 15 C -0.208 4.208 16 N -0.543 5.543 17 Si 0.818 3.182 18 H -0.180 1.180 19 H -0.193 1.193 20 H -0.213 1.213 21 C 0.025 3.975 22 C 0.348 3.652 23 O -0.443 6.443 24 O -0.331 6.331 25 C -0.113 4.113 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.136 0.864 29 H 0.191 0.809 30 H 0.187 0.813 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.104 0.896 37 H 0.271 0.729 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.224 0.119 -3.458 12.704 hybrid contribution 0.110 0.436 1.221 1.301 sum -12.113 0.555 -2.237 12.331 Atomic orbital electron populations 1.23383 0.76328 1.05621 1.02467 1.86078 1.23582 1.25933 1.89373 1.18680 0.91134 0.85612 1.00898 1.21438 1.01556 0.90202 1.03184 1.21238 0.91036 1.00326 1.06043 1.19110 0.91909 0.84472 0.98271 1.86205 1.37413 1.13161 1.88421 1.23348 0.95884 0.85787 1.02594 1.18973 0.92696 0.92398 1.07727 1.18298 0.87540 0.80589 0.84149 1.90579 1.72375 1.45869 1.42206 1.43538 1.04471 1.39274 1.27388 1.20505 1.01199 1.24421 1.01265 0.86145 1.26162 0.96688 1.00453 0.97476 1.69834 1.18477 1.40425 1.25545 0.84830 0.79005 0.77317 0.77067 1.17982 1.19311 1.21263 1.20665 0.83273 0.95902 0.97654 1.23720 0.79446 0.84650 0.77426 1.90547 1.50485 1.54011 1.49253 1.84452 1.28953 1.49718 1.70013 1.20329 0.92796 0.96210 1.01940 0.91596 0.91133 0.86439 0.80854 0.81294 0.91312 0.87730 0.90490 0.91597 0.84646 0.89650 0.72948 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -9.70 10.49 -93.35 -0.98 -10.68 16 3 C 0.08 2.71 6.68 22.45 0.15 2.86 16 4 C -0.15 -3.90 9.03 22.41 0.20 -3.70 16 5 C -0.17 -5.03 9.02 22.33 0.20 -4.83 16 6 C 0.11 4.55 6.68 22.84 0.15 4.70 16 7 O -0.34 -14.65 9.67 -86.54 -0.84 -15.48 16 8 C 0.02 0.49 9.81 113.37 1.11 1.60 16 9 C -0.11 -5.43 5.09 -20.02 -0.10 -5.53 16 10 C 0.50 27.77 6.67 86.66 0.58 28.35 16 11 O -0.62 -37.09 16.35 -0.12 0.00 -37.09 16 12 N -0.43 -23.46 2.15 -643.32 -1.38 -24.85 16 13 C -0.35 -18.39 8.80 84.09 0.74 -17.65 16 14 H 0.12 6.12 4.42 -2.91 -0.01 6.10 16 15 C -0.01 -0.37 5.10 84.95 0.43 0.06 16 16 N -0.90 -47.64 8.83 21.68 0.19 -47.45 16 17 Si 0.99 40.54 29.57 68.60 2.03 42.57 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 19 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.29 -11.83 7.11 99.48 0.71 -11.13 16 21 C 0.15 7.75 5.19 85.63 0.44 8.20 16 22 C 0.50 26.19 6.47 71.23 0.46 26.65 16 23 O -0.55 -32.78 16.97 21.95 0.37 -32.40 16 24 O -0.52 -21.60 13.42 -51.43 -0.69 -22.29 16 25 C -0.09 -3.87 7.44 22.64 0.17 -3.70 16 26 H 0.07 0.93 7.65 -2.39 -0.02 0.91 16 27 H 0.07 0.92 7.65 -2.39 -0.02 0.90 16 28 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.17 2.97 6.27 -2.91 -0.02 2.95 16 30 H 0.17 3.58 6.29 -2.91 -0.02 3.56 16 31 H 0.07 1.58 7.66 -2.39 -0.02 1.57 16 32 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.08 1.64 7.66 -2.39 -0.02 1.62 16 34 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 35 H 0.14 6.88 6.11 -2.39 -0.01 6.87 16 36 H 0.09 4.20 7.50 -2.39 -0.02 4.19 16 37 H 0.41 13.11 9.10 -74.05 -0.67 12.44 16 38 H 0.13 5.71 7.05 -2.91 -0.02 5.69 16 Total: -1.00 -80.58 326.55 4.82 -75.77 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.46 Total: 33.52 kcal Atomic # 6 Polarization: 32.73 SS G_CDS: 5.65 Total: 38.39 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -1.19 Total: -72.29 kcal Atomic # 8 Polarization: -115.81 SS G_CDS: -2.14 Total: -117.95 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -80.58 4.82 -75.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738043619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.799 kcal (2) G-P(sol) polarization free energy of solvation -80.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds