Wall clock time and date at job start Fri Apr 10 2020 17:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35999 * 117.00000 * 2 1 4 4 C 1.38493 * 120.00290 * 359.97438 * 3 2 1 5 5 C 1.38512 * 120.34636 * 180.02562 * 4 3 2 6 6 C 1.37777 * 120.34879 * 359.73037 * 5 4 3 7 7 C 1.39822 * 119.99540 * 0.52282 * 6 5 4 8 8 C 1.47437 * 120.16912 * 179.76318 * 7 6 5 9 9 O 1.21627 * 119.99831 * 125.31684 * 8 7 6 10 10 N 1.34779 * 120.00151 * 305.58352 * 8 7 6 11 11 C 1.36905 * 119.99956 * 184.61851 * 10 8 7 12 12 H 1.08002 * 119.99715 * 337.86616 * 11 10 8 13 13 C 1.39019 * 120.00088 * 157.86366 * 11 10 8 14 14 N 1.31389 * 119.99615 * 355.91113 * 13 11 10 15 15 Si 1.86800 * 120.00308 * 175.90853 * 13 11 10 16 16 H 1.48503 * 109.46841 * 60.00362 * 15 13 11 17 17 H 1.48493 * 109.47033 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47146 * 300.00224 * 15 13 11 19 19 C 1.46493 * 119.99745 * 4.62336 * 10 8 7 20 20 C 1.50705 * 109.47273 * 276.47492 * 19 10 8 21 21 O 1.20820 * 119.99423 * 0.02562 * 20 19 10 22 22 O 1.34224 * 120.00134 * 180.02562 * 20 19 10 23 23 C 1.39110 * 119.99992 * 179.97438 * 3 2 1 24 24 O 1.35749 * 120.17410 * 0.02562 * 23 3 2 25 25 C 1.42900 * 116.99721 * 269.97213 * 24 23 3 26 26 H 1.09001 * 109.47431 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47479 * 299.99902 * 1 2 3 28 28 H 1.08997 * 109.46900 * 60.00082 * 1 2 3 29 29 H 1.07995 * 119.82545 * 0.04148 * 4 3 2 30 30 H 1.07998 * 119.82082 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.00446 * 180.25626 * 6 5 4 32 32 H 0.97001 * 119.99619 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47623 * 36.47431 * 19 10 8 34 34 H 1.09008 * 109.47102 * 156.47680 * 19 10 8 35 35 H 0.96695 * 117.00130 * 180.02562 * 22 20 19 36 36 H 1.08994 * 109.47482 * 299.99794 * 25 24 23 37 37 H 1.09000 * 109.47037 * 60.00343 * 25 24 23 38 38 H 1.09007 * 109.46898 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2922 2.3733 -0.0005 5 6 1.9136 3.6112 -0.0011 6 6 3.2885 3.6999 0.0045 7 6 4.0641 2.5365 -0.0003 8 6 5.5356 2.6271 0.0004 9 8 6.1798 2.0530 0.8576 10 7 6.1668 3.3504 -0.9457 11 6 7.5346 3.3581 -1.0024 12 1 8.1129 3.1045 -0.1262 13 6 8.1793 3.6922 -2.1879 14 7 7.4778 3.9222 -3.2748 15 14 10.0427 3.8143 -2.2356 16 1 10.6342 2.5042 -1.8626 17 1 10.4796 4.1830 -3.6061 18 1 10.4954 4.8531 -1.2759 19 6 5.3891 4.1284 -1.9131 20 6 4.9567 3.2334 -3.0459 21 8 5.2661 2.0655 -3.0449 22 8 4.2280 3.7339 -4.0559 23 6 3.4356 1.2846 0.0005 24 8 4.1784 0.1483 0.0005 25 6 4.5334 -0.3946 1.2738 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2139 2.3135 -0.0003 30 1 1.3171 4.5115 -0.0019 31 1 3.7672 4.6680 0.0082 32 1 7.9276 4.1558 -4.1019 33 1 4.5091 4.5437 -1.4220 34 1 6.0032 4.9393 -2.3048 35 1 3.9739 3.1212 -4.7596 36 1 5.1180 0.3375 1.8308 37 1 3.6282 -0.6365 1.8308 38 1 5.1243 -1.2994 1.1310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738082934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:55 Heat of formation + Delta-G solvation = -165.696242 kcal Electronic energy + Delta-G solvation = -27138.144860 eV Core-core repulsion = 23140.143912 eV Total energy + Delta-G solvation = -3998.000948 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.87496 -40.93525 -39.95016 -38.91707 -37.77067 -36.99716 -36.34844 -33.81519 -31.69069 -31.15048 -29.48479 -28.26183 -27.82082 -26.93792 -24.25824 -23.34698 -22.73152 -21.23424 -19.39874 -18.99812 -18.72528 -18.43199 -17.76659 -17.60643 -17.17806 -16.94645 -16.47252 -16.27145 -16.10802 -15.92358 -15.67405 -15.58311 -15.01386 -14.79912 -14.17042 -13.80333 -13.65534 -13.39765 -13.34386 -13.24939 -12.89011 -12.71615 -12.64538 -12.39882 -12.19050 -12.13331 -12.07631 -11.95252 -11.50544 -10.97674 -10.92374 -10.58257 -9.92968 -9.76758 -9.17622 -8.41506 -6.04778 -0.06968 0.26289 1.38178 1.39845 1.50933 1.70676 1.85847 2.18774 2.30477 2.44139 2.59772 2.91533 3.00776 3.12061 3.71557 3.90694 4.07494 4.15427 4.34396 4.36109 4.38207 4.43887 4.45116 4.53277 4.56976 4.74704 4.77589 4.83189 4.97815 5.15556 5.21849 5.35166 5.38594 5.61401 5.95520 5.98696 6.20417 6.36450 6.65571 7.03226 7.23519 7.45428 7.84083 8.60924 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.005522 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.263249 B = 5068.954432 C = 5673.943698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.098 3.902 4 C -0.179 4.179 5 C -0.068 4.068 6 C -0.141 4.141 7 C -0.111 4.111 8 C 0.497 3.503 9 O -0.609 6.609 10 N -0.432 5.432 11 C -0.333 4.333 12 H 0.083 0.917 13 C -0.002 4.002 14 N -0.901 5.901 15 Si 1.000 3.000 16 H -0.285 1.285 17 H -0.270 1.270 18 H -0.258 1.258 19 C 0.133 3.867 20 C 0.499 3.501 21 O -0.554 6.554 22 O -0.517 6.517 23 C 0.070 3.930 24 O -0.351 6.351 25 C 0.043 3.957 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.178 0.822 30 H 0.184 0.816 31 H 0.151 0.849 32 H 0.276 0.724 33 H 0.121 0.879 34 H 0.134 0.866 35 H 0.410 0.590 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.029 2.443 2.514 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.052 3.948 4 C -0.198 4.198 5 C -0.086 4.086 6 C -0.160 4.160 7 C -0.115 4.115 8 C 0.287 3.713 9 O -0.495 6.495 10 N -0.150 5.150 11 C -0.460 4.460 12 H 0.100 0.900 13 C -0.202 4.202 14 N -0.540 5.540 15 Si 0.823 3.177 16 H -0.212 1.212 17 H -0.194 1.194 18 H -0.182 1.182 19 C 0.008 3.992 20 C 0.341 3.659 21 O -0.444 6.444 22 O -0.329 6.329 23 C 0.024 3.976 24 O -0.268 6.268 25 C -0.050 4.050 26 H 0.134 0.866 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.195 0.805 30 H 0.201 0.799 31 H 0.168 0.832 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.269 0.731 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.298 1.893 2.877 16.658 hybrid contribution 1.112 -0.770 -0.619 1.487 sum -15.186 1.123 2.258 15.394 Atomic orbital electron populations 1.23455 0.75879 1.05751 1.02874 1.86146 1.23943 1.25995 1.88607 1.19335 0.90122 0.86723 0.98652 1.21676 1.01773 0.90505 1.05814 1.21367 0.92832 0.98900 0.95494 1.21486 0.95173 0.96477 1.02822 1.20334 0.93397 0.94505 1.03271 1.18375 0.87523 0.80480 0.84887 1.90525 1.68553 1.49548 1.40866 1.43375 1.05944 1.40105 1.25548 1.19689 0.81211 1.47022 0.98114 0.89959 1.26101 1.05090 0.95553 0.93450 1.69715 1.37447 1.46063 1.00820 0.84893 0.76231 0.78542 0.78004 1.21150 1.19432 1.18194 1.21321 0.97447 0.93707 0.86732 1.23845 0.71970 0.87173 0.82873 1.90628 1.53980 1.21116 1.78638 1.84436 1.66728 1.47650 1.34047 1.18255 0.87770 0.85568 1.05996 1.85934 1.71196 1.38880 1.30820 1.23028 0.99646 0.98604 0.83768 0.86564 0.90640 0.91147 0.80520 0.79881 0.83173 0.91359 0.86224 0.84873 0.73083 0.94018 0.92421 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -10.02 10.28 -79.62 -0.82 -10.84 16 3 C 0.10 3.25 6.69 22.54 0.15 3.40 16 4 C -0.18 -4.19 9.03 22.40 0.20 -3.99 16 5 C -0.07 -1.55 10.02 22.23 0.22 -1.33 16 6 C -0.14 -4.52 7.83 22.54 0.18 -4.34 16 7 C -0.11 -4.89 4.87 -20.02 -0.10 -4.99 16 8 C 0.50 26.89 6.54 86.67 0.57 27.46 16 9 O -0.61 -36.70 14.36 -1.29 -0.02 -36.71 16 10 N -0.43 -23.34 2.18 -643.30 -1.40 -24.74 16 11 C -0.33 -19.31 9.35 84.09 0.79 -18.52 16 12 H 0.08 5.03 7.34 -2.91 -0.02 5.01 16 13 C 0.00 -0.08 5.24 84.95 0.44 0.36 16 14 N -0.90 -47.61 8.75 21.68 0.19 -47.42 16 15 Si 1.00 43.39 29.56 68.60 2.03 45.42 16 16 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 19 C 0.13 6.03 4.91 85.64 0.42 6.45 16 20 C 0.50 23.43 6.18 71.24 0.44 23.87 16 21 O -0.55 -31.53 16.89 21.98 0.37 -31.16 16 22 O -0.52 -18.89 13.42 -51.36 -0.69 -19.58 16 23 C 0.07 3.02 5.74 22.93 0.13 3.15 16 24 O -0.35 -17.12 9.54 -71.59 -0.68 -17.81 16 25 C 0.04 1.76 10.77 113.37 1.22 2.99 16 26 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 0.89 7.66 -2.39 -0.02 0.87 16 28 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 29 H 0.18 2.45 6.27 -2.91 -0.02 2.43 16 30 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.15 4.25 6.56 -2.91 -0.02 4.23 16 32 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 33 H 0.12 4.39 4.07 -2.39 -0.01 4.38 16 34 H 0.13 6.22 6.17 -2.38 -0.01 6.20 16 35 H 0.41 11.61 9.10 -74.06 -0.67 10.94 16 36 H 0.04 1.88 6.30 -2.39 -0.02 1.87 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.10 3.50 8.14 -2.38 -0.02 3.48 16 Total: -1.00 -85.55 325.20 5.21 -80.33 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.46 Total: 26.66 kcal Atomic # 6 Polarization: 30.07 SS G_CDS: 5.78 Total: 35.85 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.21 Total: -72.16 kcal Atomic # 8 Polarization: -114.26 SS G_CDS: -1.84 Total: -116.10 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -85.55 5.21 -80.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738082934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.363 kcal (2) G-P(sol) polarization free energy of solvation -85.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds