Wall clock time and date at job start Fri Apr 10 2020 18:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35994 * 117.00143 * 2 1 4 4 C 1.38566 * 120.07139 * 0.02562 * 3 2 1 5 5 C 1.38242 * 119.99880 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.14666 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.14487 * 359.97438 * 6 5 4 8 8 C 1.38563 * 120.00037 * 359.72690 * 7 6 5 9 9 O 1.36000 * 120.07442 * 180.27165 * 8 7 6 10 10 C 1.42899 * 116.99840 * 0.27893 * 9 8 7 11 11 C 1.50694 * 109.47218 * 179.97438 * 10 9 8 12 12 O 1.21295 * 119.99891 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00183 * 180.02562 * 11 10 9 14 14 C 1.37099 * 120.00094 * 180.02562 * 13 11 10 15 15 H 1.08007 * 120.00047 * 322.20420 * 14 13 11 16 16 C 1.38952 * 120.00398 * 142.19852 * 14 13 11 17 17 N 1.31411 * 120.00165 * 158.59979 * 16 14 13 18 18 Si 1.86794 * 119.99875 * 338.60799 * 16 14 13 19 19 H 1.48507 * 109.47340 * 95.98725 * 18 16 14 20 20 H 1.48502 * 109.47197 * 215.98829 * 18 16 14 21 21 H 1.48497 * 109.47117 * 335.98799 * 18 16 14 22 22 C 1.46501 * 120.00117 * 359.97438 * 13 11 10 23 23 C 1.50700 * 109.46759 * 83.24282 * 22 13 11 24 24 O 1.20825 * 120.00249 * 359.97438 * 23 22 13 25 25 O 1.34232 * 119.99542 * 180.02562 * 23 22 13 26 26 H 1.08994 * 109.47202 * 59.99858 * 1 2 3 27 27 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46916 * 299.99487 * 1 2 3 29 29 H 1.08006 * 120.00053 * 359.97410 * 4 3 2 30 30 H 1.08001 * 119.92453 * 179.97438 * 5 4 3 31 31 H 1.08005 * 119.93011 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.99790 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.47317 * 300.00099 * 10 9 8 34 34 H 1.09001 * 109.47100 * 59.99944 * 10 9 8 35 35 H 0.96997 * 119.99779 * 180.02562 * 17 16 14 36 36 H 1.09005 * 109.47124 * 203.24090 * 22 13 11 37 37 H 1.08997 * 109.47094 * 323.24144 * 22 13 11 38 38 H 0.96701 * 116.99775 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3029 3.6798 0.0005 7 6 4.0603 2.5232 0.0000 8 6 3.4359 1.2863 0.0057 9 8 4.1795 0.1475 0.0108 10 6 5.6003 0.3005 0.0161 11 6 6.2518 -1.0583 0.0218 12 8 5.5669 -2.0593 0.0210 13 7 7.5956 -1.1613 0.0279 14 6 8.1884 -2.3975 0.0326 15 1 7.7529 -3.2030 0.6053 16 6 9.3494 -2.6142 -0.6994 17 7 10.1442 -3.6139 -0.3902 18 14 9.7803 -1.4843 -2.1231 19 1 10.7195 -0.4337 -1.6545 20 1 10.4210 -2.2739 -3.2054 21 1 8.5432 -0.8469 -2.6412 22 6 8.4230 0.0478 0.0284 23 6 8.5625 0.5603 1.4387 24 8 8.0256 -0.0240 2.3498 25 8 9.2825 1.6666 1.6824 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2146 2.3196 0.0005 30 1 1.3342 4.5115 0.0011 31 1 3.7909 4.6434 0.0005 32 1 5.1386 2.5839 0.0000 33 1 5.9100 0.8487 -0.8737 34 1 5.9030 0.8520 0.9062 35 1 10.9548 -3.7649 -0.9010 36 1 9.4092 -0.1867 -0.3723 37 1 7.9514 0.8110 -0.5906 38 1 9.3430 1.9571 2.6028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738135306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:00 Heat of formation + Delta-G solvation = -168.714010 kcal Electronic energy + Delta-G solvation = -25756.581762 eV Core-core repulsion = 21758.449953 eV Total energy + Delta-G solvation = -3998.131809 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.84643 -41.37057 -40.37022 -39.26158 -37.77241 -37.23136 -36.66987 -34.31403 -31.47949 -31.27920 -29.93260 -29.53451 -28.06674 -26.51573 -23.41490 -23.24747 -23.13191 -20.94254 -19.83775 -19.27465 -19.24481 -18.44345 -17.98328 -17.73923 -17.50679 -17.19225 -16.94969 -16.62684 -16.47037 -15.87580 -15.63977 -15.48834 -15.32323 -14.77850 -14.53592 -14.26634 -14.16875 -13.77326 -13.53103 -13.47045 -12.99064 -12.89690 -12.60041 -12.39720 -12.27054 -12.13656 -12.01005 -11.98373 -11.96708 -11.73719 -11.14515 -10.61262 -10.01207 -9.72284 -8.82969 -8.56558 -6.26891 0.31493 0.46891 1.11613 1.18026 1.31982 1.47161 1.51178 1.73338 2.08974 2.16632 2.41547 2.71860 2.77637 2.92169 3.44604 3.70835 3.88695 3.91858 3.95885 4.05856 4.11641 4.14545 4.31246 4.38782 4.40238 4.44582 4.51328 4.70335 4.76164 5.23290 5.35478 5.37246 5.54184 5.59237 5.78974 5.93804 6.05443 6.35986 6.63742 6.76830 6.96315 7.08494 7.59095 8.60690 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.004235 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.368411 B = 6610.650308 C = 7352.809774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.346 6.346 3 C 0.070 3.930 4 C -0.171 4.171 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.179 4.179 8 C 0.059 3.941 9 O -0.316 6.316 10 C 0.056 3.944 11 C 0.469 3.531 12 O -0.589 6.589 13 N -0.454 5.454 14 C -0.342 4.342 15 H 0.037 0.963 16 C 0.012 3.988 17 N -0.904 5.904 18 Si 0.936 3.064 19 H -0.220 1.220 20 H -0.280 1.280 21 H -0.240 1.240 22 C 0.083 3.917 23 C 0.467 3.533 24 O -0.540 6.540 25 O -0.499 6.499 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.159 0.841 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.285 0.715 36 H 0.120 0.880 37 H 0.161 0.839 38 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 23.655 -2.291 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.260 6.260 3 C 0.025 3.975 4 C -0.190 4.190 5 C -0.132 4.132 6 C -0.131 4.131 7 C -0.197 4.197 8 C 0.014 3.986 9 O -0.230 6.230 10 C -0.022 4.022 11 C 0.259 3.741 12 O -0.470 6.470 13 N -0.177 5.177 14 C -0.469 4.469 15 H 0.055 0.945 16 C -0.191 4.191 17 N -0.541 5.541 18 Si 0.756 3.244 19 H -0.144 1.144 20 H -0.207 1.207 21 H -0.163 1.163 22 C -0.041 4.041 23 C 0.308 3.692 24 O -0.429 6.429 25 O -0.312 6.312 26 H 0.090 0.910 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.177 0.823 30 H 0.180 0.820 31 H 0.180 0.820 32 H 0.169 0.831 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.138 0.862 37 H 0.178 0.822 38 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -10.917 22.335 -2.445 24.980 hybrid contribution 0.420 -0.634 0.556 0.943 sum -10.497 21.701 -1.889 24.180 Atomic orbital electron populations 1.23327 0.76526 1.05125 1.02536 1.86224 1.23490 1.27093 1.89230 1.18764 0.89330 0.86287 1.03166 1.21405 1.01026 0.90810 1.05724 1.21333 0.94919 0.97542 0.99433 1.21302 0.94056 0.98268 0.99444 1.21433 1.01732 0.90547 1.06031 1.18970 0.89134 0.86555 1.03951 1.86243 1.17438 1.29903 1.89390 1.22546 0.80005 0.94947 1.04737 1.20729 0.82646 0.90936 0.79832 1.90584 1.63048 1.40738 1.52643 1.43202 1.03284 1.04996 1.66231 1.18551 1.09313 0.88353 1.30683 0.94517 1.26319 0.94365 0.99128 0.99313 1.69867 1.11962 1.32975 1.39248 0.86022 0.80651 0.79524 0.78249 1.14424 1.20663 1.16270 1.21942 1.00576 0.89640 0.91964 1.24173 0.74496 0.77714 0.92774 1.90762 1.46682 1.57848 1.47581 1.84474 1.66643 1.41315 1.38759 0.90967 0.87643 0.91172 0.82309 0.81964 0.82024 0.83132 0.85702 0.88621 0.90517 0.86242 0.82162 0.71023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.35 -11.52 10.28 -79.62 -0.82 -12.33 16 3 C 0.07 2.12 6.70 22.57 0.15 2.27 16 4 C -0.17 -3.49 9.04 22.35 0.20 -3.29 16 5 C -0.11 -1.82 10.04 22.27 0.22 -1.59 16 6 C -0.11 -1.91 10.04 22.27 0.22 -1.68 16 7 C -0.18 -4.20 9.04 22.35 0.20 -4.00 16 8 C 0.06 1.94 6.70 22.57 0.15 2.09 16 9 O -0.32 -13.28 9.45 -67.14 -0.63 -13.92 16 10 C 0.06 2.06 3.84 71.23 0.27 2.34 16 11 C 0.47 23.81 7.45 87.66 0.65 24.46 16 12 O -0.59 -36.92 16.37 15.96 0.26 -36.66 16 13 N -0.45 -22.41 1.74 -639.59 -1.11 -23.52 16 14 C -0.34 -20.58 9.36 84.04 0.79 -19.79 16 15 H 0.04 2.67 7.92 -2.91 -0.02 2.65 16 16 C 0.01 0.65 5.28 84.93 0.45 1.10 16 17 N -0.90 -53.44 13.96 21.66 0.30 -53.14 16 18 Si 0.94 37.66 24.97 68.60 1.71 39.37 16 19 H -0.22 -7.19 6.72 99.48 0.67 -6.53 16 20 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.24 -8.94 7.11 99.48 0.71 -8.23 16 22 C 0.08 2.94 4.33 85.63 0.37 3.31 16 23 C 0.47 15.82 7.63 71.24 0.54 16.37 16 24 O -0.54 -23.69 16.99 21.97 0.37 -23.32 16 25 O -0.50 -11.08 13.42 -51.43 -0.69 -11.77 16 26 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 27 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 29 H 0.16 2.23 6.30 -2.91 -0.02 2.21 16 30 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 31 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.15 2.83 6.30 -2.91 -0.02 2.81 16 33 H 0.13 3.37 6.93 -2.39 -0.02 3.36 16 34 H 0.10 3.10 6.96 -2.39 -0.02 3.08 16 35 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.12 4.23 3.61 -2.38 -0.01 4.22 16 37 H 0.16 3.78 6.73 -2.39 -0.02 3.77 16 38 H 0.43 5.69 9.10 -74.06 -0.67 5.02 16 Total: -1.00 -94.45 329.11 5.15 -89.30 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.42 Total: 22.91 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 5.34 Total: 23.07 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -0.81 Total: -76.66 kcal Atomic # 8 Polarization: -96.49 SS G_CDS: -1.51 Total: -98.00 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.71 Total: 39.37 kcal Total: -94.45 5.15 -89.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738135306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.410 kcal (2) G-P(sol) polarization free energy of solvation -94.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds