Wall clock time and date at job start Fri Apr 10 2020 18:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30376 * 125.99302 * 2 1 4 4 N 1.39906 * 109.01552 * 179.97438 * 3 2 1 5 5 C 1.46512 * 125.71407 * 179.97438 * 4 3 2 6 6 C 1.34210 * 108.57240 * 359.72797 * 4 3 2 7 7 C 1.50694 * 126.32905 * 180.26765 * 6 4 3 8 8 C 1.38503 * 107.34407 * 0.42434 * 6 4 3 9 9 C 1.47067 * 126.47110 * 179.83565 * 8 6 4 10 10 O 1.21553 * 120.00289 * 262.17348 * 9 8 6 11 11 C 1.48564 * 120.00089 * 82.17756 * 9 8 6 12 12 O 1.21540 * 120.00460 * 276.79529 * 11 9 8 13 13 N 1.34784 * 119.99841 * 96.78470 * 11 9 8 14 14 C 1.35904 * 120.00124 * 354.64659 * 13 11 9 15 15 H 1.07997 * 120.00366 * 22.93136 * 14 13 11 16 16 C 1.39774 * 119.99961 * 202.93472 * 14 13 11 17 17 N 1.30895 * 120.00016 * 17.71921 * 16 14 13 18 18 Si 1.86806 * 119.99810 * 197.72743 * 16 14 13 19 19 H 1.48494 * 109.47255 * 90.00014 * 18 16 14 20 20 H 1.48504 * 109.46677 * 209.99938 * 18 16 14 21 21 H 1.48502 * 109.47011 * 329.99480 * 18 16 14 22 22 C 1.46500 * 119.99789 * 174.91712 * 13 11 9 23 23 C 1.50707 * 109.47187 * 84.23263 * 22 13 11 24 24 O 1.20818 * 119.99582 * 0.02562 * 23 22 13 25 25 O 1.34229 * 119.99847 * 179.97438 * 23 22 13 26 26 H 1.08998 * 109.47831 * 265.21363 * 1 2 3 27 27 H 1.09002 * 109.47422 * 25.22219 * 1 2 3 28 28 H 1.09007 * 109.46997 * 145.21644 * 1 2 3 29 29 H 1.08997 * 109.46820 * 89.97840 * 5 4 3 30 30 H 1.08997 * 109.46949 * 209.97371 * 5 4 3 31 31 H 1.09000 * 109.46877 * 329.97881 * 5 4 3 32 32 H 1.09000 * 109.46956 * 270.18792 * 7 6 4 33 33 H 1.09006 * 109.47121 * 30.18926 * 7 6 4 34 34 H 1.08999 * 109.46897 * 150.18672 * 7 6 4 35 35 H 0.97007 * 119.99879 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.47246 * 204.23539 * 22 13 11 37 37 H 1.09001 * 109.46996 * 324.23690 * 22 13 11 38 38 H 0.96694 * 116.99474 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0549 0.0000 4 7 3.6113 0.6463 0.0006 5 6 4.7766 1.5344 0.0002 6 6 3.6486 -0.6952 0.0070 7 6 4.8870 -1.5538 0.0155 8 6 2.3386 -1.1448 0.0007 9 6 1.8956 -2.5472 0.0009 10 8 1.5815 -3.0855 -1.0426 11 6 1.8319 -3.3058 1.2767 12 8 2.8341 -3.8280 1.7240 13 7 0.6626 -3.4150 1.9381 14 6 -0.4328 -2.7420 1.4975 15 1 -0.4973 -2.4326 0.4648 16 6 -1.4760 -2.4502 2.3808 17 7 -1.2731 -2.5015 3.6729 18 14 -3.1597 -1.9873 1.7174 19 1 -3.9790 -3.2140 1.5467 20 1 -3.8333 -1.0711 2.6725 21 1 -3.0054 -1.3085 0.4056 22 6 0.5740 -4.2544 3.1355 23 6 1.0327 -3.4671 4.3360 24 8 1.3957 -2.3222 4.2048 25 8 1.0368 -4.0375 5.5510 26 1 -0.3635 -0.0857 1.0240 27 1 -0.3634 0.9297 -0.4379 28 1 -0.3633 -0.8441 -0.5863 29 1 5.0651 1.7556 1.0278 30 1 5.6052 1.0461 -0.5126 31 1 4.5264 2.4619 -0.5146 32 1 5.1913 -1.7628 -1.0101 33 1 5.6899 -1.0284 0.5328 34 1 4.6757 -2.4912 0.5301 35 1 -1.9972 -2.2994 4.2860 36 1 -0.4587 -4.5711 3.2816 37 1 1.2092 -5.1316 3.0121 38 1 1.3397 -3.4930 6.2905 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738906803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:03 Heat of formation + Delta-G solvation = -67.219161 kcal Electronic energy + Delta-G solvation = -27057.549816 eV Core-core repulsion = 23096.111905 eV Total energy + Delta-G solvation = -3961.437911 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06133 -39.55693 -38.60001 -37.15334 -35.28050 -34.58676 -33.92852 -31.83913 -31.78701 -29.30193 -28.44381 -27.36504 -25.77826 -24.90513 -23.56901 -21.08126 -20.05647 -19.16128 -18.96128 -17.49042 -16.95304 -16.37752 -16.26017 -15.59273 -15.51351 -14.96990 -14.69758 -14.52312 -14.39102 -13.70475 -13.43112 -13.20311 -13.06600 -12.93863 -12.93209 -12.64946 -12.36977 -12.12714 -11.82586 -11.80623 -11.63227 -11.57371 -11.47688 -11.03948 -10.68391 -10.61119 -10.44629 -10.24622 -10.14973 -9.63866 -9.14697 -8.76324 -8.54838 -8.12527 -7.95121 -6.64167 -4.14384 2.03161 2.32359 2.66229 2.89245 3.03789 3.14185 3.16469 3.42341 3.68815 3.92463 4.16414 4.37998 4.67272 4.81167 4.85013 5.14914 5.16100 5.31479 5.39694 5.46895 5.61489 5.69374 5.97545 6.06314 6.16699 6.20413 6.22352 6.42439 6.45288 6.52049 6.58478 6.99673 7.21388 7.22326 7.36706 7.63269 7.88052 8.03155 8.08643 8.77403 9.06064 9.22566 9.52600 10.42659 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.006763 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.691971 B = 4138.883305 C = 5015.345602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.137 3.863 3 N -0.308 5.308 4 N -0.369 5.369 5 C 0.102 3.898 6 C 0.126 3.874 7 C -0.100 4.100 8 C -0.294 4.294 9 C 0.475 3.525 10 O -0.440 6.440 11 C 0.440 3.560 12 O -0.583 6.583 13 N -0.397 5.397 14 C -0.354 4.354 15 H 0.106 0.894 16 C 0.049 3.951 17 N -0.855 5.855 18 Si 0.918 3.082 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.261 1.261 22 C 0.156 3.844 23 C 0.499 3.501 24 O -0.500 6.500 25 O -0.537 6.537 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.277 0.723 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 3.214 -2.684 7.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 N -0.130 5.130 4 N -0.149 5.149 5 C -0.039 4.039 6 C -0.004 4.004 7 C -0.159 4.159 8 C -0.307 4.307 9 C 0.345 3.655 10 O -0.310 6.310 11 C 0.227 3.773 12 O -0.470 6.470 13 N -0.115 5.115 14 C -0.481 4.481 15 H 0.123 0.877 16 C -0.159 4.159 17 N -0.491 5.491 18 Si 0.744 3.256 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.185 1.185 22 C 0.031 3.969 23 C 0.339 3.661 24 O -0.384 6.384 25 O -0.348 6.348 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.139 0.861 37 H 0.103 0.897 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.109 4.172 -3.241 8.077 hybrid contribution -0.705 0.054 0.611 0.935 sum 5.404 4.226 -2.630 7.347 Atomic orbital electron populations 1.20484 0.85807 1.02539 1.04919 1.22260 0.96859 0.88307 0.95480 1.76983 0.85696 1.22424 1.27877 1.47998 1.05813 1.03877 1.57206 1.21816 0.84402 0.94319 1.03358 1.21349 0.95945 0.84503 0.98556 1.20612 0.92116 0.99776 1.03370 1.20258 0.92430 0.95054 1.22920 1.21166 0.70349 0.85304 0.88728 1.90560 1.35903 1.69865 1.34692 1.20152 0.83825 0.85182 0.88117 1.90655 1.34165 1.52576 1.69572 1.42963 1.08221 1.39078 1.21283 1.19663 0.95186 1.36865 0.96371 0.87658 1.25310 1.00373 0.95681 0.94498 1.69519 1.33053 1.44499 1.02021 0.86052 0.81295 0.78891 0.79397 1.19826 1.20638 1.18496 1.20438 1.03485 0.91335 0.81661 1.23402 0.72915 0.86624 0.83196 1.90577 1.44122 1.18396 1.85313 1.84504 1.81653 1.49808 1.18850 0.88323 0.91396 0.90124 0.90763 0.89629 0.89268 0.90016 0.90805 0.88094 0.91225 0.86139 0.89671 0.75306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 9.04 36.01 0.33 -1.18 16 2 C 0.14 2.87 7.27 -81.97 -0.60 2.27 16 3 N -0.31 -6.05 12.49 33.93 0.42 -5.63 16 4 N -0.37 -6.25 3.98 -63.23 -0.25 -6.50 16 5 C 0.10 1.10 11.05 59.85 0.66 1.76 16 6 C 0.13 2.32 7.02 -81.46 -0.57 1.75 16 7 C -0.10 -1.46 9.70 36.00 0.35 -1.11 16 8 C -0.29 -6.35 5.81 -104.98 -0.61 -6.96 16 9 C 0.47 11.09 4.43 -31.74 -0.14 10.95 16 10 O -0.44 -10.51 17.85 5.32 0.09 -10.42 16 11 C 0.44 11.09 7.13 -12.00 -0.09 11.01 16 12 O -0.58 -15.23 16.21 5.33 0.09 -15.14 16 13 N -0.40 -9.91 2.13 -116.95 -0.25 -10.16 16 14 C -0.35 -8.64 7.88 -15.17 -0.12 -8.76 16 15 H 0.11 2.53 4.69 -52.49 -0.25 2.28 16 16 C 0.05 1.16 4.92 -17.38 -0.09 1.08 16 17 N -0.85 -21.03 8.94 55.54 0.50 -20.53 16 18 Si 0.92 18.41 29.59 -169.99 -5.03 13.38 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 22 C 0.16 3.60 5.10 -5.19 -0.03 3.58 16 23 C 0.50 11.78 6.36 36.01 0.23 12.01 16 24 O -0.50 -13.54 16.42 -18.74 -0.31 -13.85 16 25 O -0.54 -10.40 13.42 -39.26 -0.53 -10.93 16 26 H 0.10 2.04 7.51 -51.93 -0.39 1.65 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.08 1.53 6.73 -51.92 -0.35 1.18 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.67 7.64 -51.93 -0.40 0.27 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.84 7.71 -51.93 -0.40 0.44 16 34 H 0.10 1.72 7.34 -51.93 -0.38 1.34 16 35 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 36 H 0.12 2.71 6.72 -51.93 -0.35 2.36 16 37 H 0.09 1.82 7.68 -51.93 -0.40 1.42 16 38 H 0.39 5.90 9.10 45.56 0.41 6.32 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -33.70 334.08 -4.22 -37.92 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -3.32 Total: 10.44 kcal Atomic # 6 Polarization: 27.07 SS G_CDS: -0.67 Total: 26.40 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.42 Total: -42.83 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -0.65 Total: -50.34 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.70 -4.22 -37.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738906803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.302 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds