Wall clock time and date at job start Fri Apr 10 2020 18:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.34965 * 117.00144 * 2 1 4 4 O 1.21705 * 120.00227 * 359.97438 * 3 2 1 5 5 C 1.41586 * 119.99991 * 179.97438 * 3 2 1 6 6 N 1.38210 * 126.36163 * 359.97438 * 5 3 2 7 7 H 0.97006 * 125.63956 * 0.02573 * 6 5 3 8 8 C 1.35623 * 108.71301 * 179.97438 * 6 5 3 9 9 C 1.50699 * 125.40853 * 180.02562 * 8 6 5 10 10 C 1.35204 * 109.17397 * 359.74945 * 8 6 5 11 11 C 1.38890 * 126.35399 * 179.97438 * 5 3 2 12 12 N 1.39255 * 126.56884 * 359.97438 * 11 5 3 13 13 C 1.34777 * 119.99935 * 179.97438 * 12 11 5 14 14 O 1.21373 * 119.99950 * 0.02562 * 13 12 11 15 15 C 1.49346 * 120.00204 * 180.02562 * 13 12 11 16 16 O 1.21359 * 119.99665 * 0.02562 * 15 13 12 17 17 N 1.34777 * 120.00208 * 180.02562 * 15 13 12 18 18 C 1.46496 * 119.99875 * 180.02562 * 17 15 13 19 19 C 1.50702 * 109.47286 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99603 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00225 * 180.02562 * 19 18 17 22 22 N 1.31508 * 120.00183 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99987 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47112 * 59.99169 * 23 21 19 25 25 H 1.48496 * 109.47325 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47000 * 299.99517 * 23 21 19 27 27 H 1.08993 * 109.46923 * 300.00498 * 1 2 3 28 28 H 1.08999 * 109.46874 * 60.00323 * 1 2 3 29 29 H 1.09002 * 109.46988 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47104 * 89.98376 * 9 8 6 31 31 H 1.08999 * 109.46977 * 209.97925 * 9 8 6 32 32 H 1.08996 * 109.47605 * 329.98116 * 9 8 6 33 33 H 1.08009 * 126.01623 * 180.24417 * 10 8 6 34 34 H 0.96999 * 120.00018 * 0.02562 * 12 11 5 35 35 H 0.96999 * 120.00043 * 359.97438 * 17 15 13 36 36 H 1.09004 * 109.47374 * 299.99565 * 18 17 15 37 37 H 1.08996 * 109.47565 * 59.99371 * 18 17 15 38 38 H 0.97002 * 120.00081 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0418 1.2025 0.0000 4 8 1.3790 2.2233 -0.0005 5 6 3.4557 1.2766 0.0005 6 7 4.3323 0.2080 0.0016 7 1 4.0812 -0.7290 0.0018 8 6 5.6014 0.6862 0.0013 9 6 6.8515 -0.1553 0.0016 10 6 5.5666 2.0378 -0.0056 11 6 4.2194 2.4367 0.0001 12 7 3.7414 3.7447 -0.0014 13 6 4.6064 4.7782 -0.0012 14 8 5.8019 4.5690 0.0000 15 6 4.0938 6.1810 -0.0022 16 8 2.8984 6.3901 -0.0029 17 7 4.9588 7.2146 -0.0025 18 6 4.4559 8.5905 -0.0030 19 6 5.6179 9.5501 -0.0038 20 1 6.6298 9.1726 -0.0035 21 6 5.3893 10.9097 -0.0038 22 7 4.1571 11.3693 -0.0037 23 14 6.8297 12.0991 -0.0041 24 1 7.6570 11.8743 -1.2166 25 1 6.3200 13.4938 -0.0047 26 1 7.6572 11.8746 1.2084 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 7.1527 -0.3589 -1.0260 31 1 7.6500 0.3806 0.5148 32 1 6.6562 -1.0960 0.5162 33 1 6.4236 2.6951 -0.0112 34 1 2.7859 3.9118 -0.0020 35 1 5.9142 7.0474 -0.0016 36 1 3.8487 8.7552 -0.8931 37 1 3.8484 8.7557 0.8868 38 1 3.9962 12.3259 -0.0041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787593827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:42 Heat of formation + Delta-G solvation = -139.157592 kcal Electronic energy + Delta-G solvation = -24645.031658 eV Core-core repulsion = 20680.474263 eV Total energy + Delta-G solvation = -3964.557395 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.99863 -41.66199 -41.05288 -39.63654 -37.80341 -36.74229 -35.88121 -34.37672 -32.85088 -31.47272 -29.73508 -29.45022 -27.54991 -26.53504 -24.52747 -23.27283 -22.11426 -21.71228 -20.99244 -19.94202 -19.64407 -18.31435 -18.19738 -17.71087 -17.62960 -17.15325 -16.91418 -16.63783 -16.03964 -15.93025 -15.83686 -15.27059 -14.95728 -14.87703 -14.36311 -14.19547 -14.07203 -13.96858 -13.70577 -13.35782 -13.03749 -13.02798 -12.90828 -12.68972 -12.62847 -12.24976 -12.20687 -11.89004 -11.83723 -11.55368 -10.83590 -10.73932 -10.08550 -9.59382 -9.07184 -8.30485 -6.47296 -0.35318 0.39555 1.12399 1.45245 1.48824 1.51301 1.57204 1.69935 1.82896 2.05679 2.23033 2.37309 2.67228 3.04755 3.37997 3.72934 3.87834 4.06574 4.29781 4.31336 4.38884 4.57866 4.68392 4.74746 4.86845 4.88486 4.99062 5.16159 5.18506 5.24307 5.24665 5.51396 5.54820 5.72921 5.77140 5.94899 6.37545 6.43365 6.56397 6.61009 6.68765 6.97690 7.25690 8.81217 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.002838 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.193859 B = 9864.353190 C =11180.798441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.537 3.463 4 O -0.545 6.545 5 C -0.107 4.107 6 N -0.502 5.502 7 H 0.444 0.556 8 C 0.126 3.874 9 C -0.092 4.092 10 C -0.245 4.245 11 C 0.158 3.842 12 N -0.614 5.614 13 C 0.520 3.480 14 O -0.498 6.498 15 C 0.493 3.507 16 O -0.559 6.559 17 N -0.667 5.667 18 C 0.262 3.738 19 C -0.562 4.562 20 H 0.083 0.917 21 C 0.009 3.991 22 N -0.927 5.927 23 Si 0.985 3.015 24 H -0.263 1.263 25 H -0.283 1.283 26 H -0.263 1.263 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.139 0.861 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.164 0.836 34 H 0.429 0.571 35 H 0.415 0.585 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.623 -30.338 0.001 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.388 3.612 4 O -0.437 6.437 5 C -0.218 4.218 6 N -0.104 5.104 7 H 0.286 0.714 8 C 0.004 3.996 9 C -0.149 4.149 10 C -0.270 4.270 11 C 0.052 3.948 12 N -0.260 5.260 13 C 0.302 3.698 14 O -0.372 6.372 15 C 0.273 3.727 16 O -0.439 6.439 17 N -0.317 5.317 18 C 0.141 3.859 19 C -0.600 4.600 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.808 3.192 24 H -0.187 1.187 25 H -0.209 1.209 26 H -0.187 1.187 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.182 0.818 34 H 0.269 0.731 35 H 0.252 0.748 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.139 -29.957 0.002 30.033 hybrid contribution -0.571 0.931 -0.002 1.092 sum 1.568 -29.026 0.000 29.068 Atomic orbital electron populations 1.23198 0.74960 1.05907 1.02370 1.86117 1.25119 1.31138 1.84543 1.18507 0.87185 0.82244 0.73307 1.90904 1.66378 1.36649 1.49771 1.17313 0.87102 0.87565 1.29820 1.41672 1.04175 1.08394 1.56129 0.71355 1.21200 0.86859 0.93285 0.98287 1.20716 0.90153 0.98870 1.05175 1.21188 0.94881 0.95060 1.15849 1.17738 0.94293 0.81931 1.00827 1.42661 1.12124 1.02984 1.68212 1.20052 0.86235 0.85911 0.77574 1.90639 1.14960 1.85213 1.46427 1.20129 0.86687 0.86535 0.79378 1.90741 1.16381 1.85965 1.50848 1.46099 1.10719 1.06307 1.68621 1.18859 0.95429 0.76083 0.95559 1.21540 0.93200 0.91538 1.53679 0.89906 1.26007 0.99275 1.00240 0.93624 1.70106 1.21890 1.15052 1.49475 0.85201 0.77951 0.76555 0.79505 1.18731 1.20855 1.18723 0.92438 0.92448 0.84257 0.88223 0.88529 0.88315 0.81818 0.73091 0.74759 0.97781 0.97779 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.45 113.37 1.18 1.59 16 2 O -0.35 -6.59 10.45 -58.83 -0.61 -7.21 16 3 C 0.54 13.77 7.72 68.65 0.53 14.30 16 4 O -0.54 -17.67 14.75 19.17 0.28 -17.38 16 5 C -0.11 -2.59 6.92 39.12 0.27 -2.32 16 6 N -0.50 -7.43 6.10 -175.14 -1.07 -8.50 16 7 H 0.44 3.28 8.96 -92.70 -0.83 2.45 16 8 C 0.13 1.92 7.11 41.27 0.29 2.22 16 9 C -0.09 -0.52 10.41 71.24 0.74 0.22 16 10 C -0.24 -5.97 9.50 22.12 0.21 -5.76 16 11 C 0.16 4.60 6.91 38.67 0.27 4.87 16 12 N -0.61 -21.09 5.37 -304.02 -1.63 -22.72 16 13 C 0.52 19.45 7.85 87.24 0.68 20.13 16 14 O -0.50 -18.10 13.65 -3.32 -0.05 -18.15 16 15 C 0.49 21.75 7.89 87.24 0.69 22.44 16 16 O -0.56 -28.01 16.48 -3.28 -0.05 -28.06 16 17 N -0.67 -30.44 5.54 -468.25 -2.59 -33.04 16 18 C 0.26 14.48 5.43 85.63 0.46 14.94 16 19 C -0.56 -30.91 9.28 25.60 0.24 -30.68 16 20 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 21 C 0.01 0.49 5.46 84.65 0.46 0.95 16 22 N -0.93 -55.47 13.29 21.44 0.28 -55.19 16 23 Si 0.99 42.56 29.54 68.60 2.03 44.59 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 28 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 29 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.16 4.38 5.96 -2.91 -0.02 4.36 16 34 H 0.43 15.58 6.26 -92.71 -0.58 15.00 16 35 H 0.42 16.94 7.79 -92.71 -0.72 16.22 16 36 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -75.47 341.37 1.64 -73.83 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -0.98 Total: 28.94 kcal Atomic # 6 Polarization: 36.86 SS G_CDS: 6.03 Total: 42.89 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -5.01 Total: -119.45 kcal Atomic # 8 Polarization: -70.37 SS G_CDS: -0.43 Total: -70.80 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -75.47 1.64 -73.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787593827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.325 kcal (2) G-P(sol) polarization free energy of solvation -75.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds