Wall clock time and date at job start Fri Apr 10 2020 18:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34692 * 116.99425 * 2 1 4 4 O 1.21435 * 120.00503 * 0.02562 * 3 2 1 5 5 C 1.47910 * 119.99596 * 179.97438 * 3 2 1 6 6 C 1.39901 * 120.46484 * 180.02562 * 5 3 2 7 7 C 1.38455 * 118.35579 * 179.97438 * 6 5 3 8 8 C 1.39336 * 119.19185 * 0.02562 * 7 6 5 9 9 C 1.48256 * 119.57198 * 179.97438 * 8 7 6 10 10 O 1.21408 * 119.99673 * 359.97438 * 9 8 7 11 11 O 1.34661 * 120.00319 * 179.97438 * 9 8 7 12 12 C 1.45198 * 117.00160 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47190 * 180.02562 * 12 11 9 14 14 O 1.42907 * 109.47320 * 64.99961 * 13 12 11 15 15 C 1.42891 * 114.00180 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47521 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99603 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00819 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99353 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00436 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46922 * 59.99775 * 20 18 16 22 22 H 1.48493 * 109.47335 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47277 * 299.99963 * 20 18 16 24 24 N 1.32744 * 120.85663 * 359.97438 * 8 7 6 25 25 C 1.31391 * 121.80853 * 0.04305 * 24 8 7 26 26 H 1.08994 * 109.47596 * 59.99992 * 1 2 3 27 27 H 1.09000 * 109.46947 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47101 * 299.99366 * 1 2 3 29 29 H 1.07996 * 120.82341 * 359.95967 * 6 5 3 30 30 H 1.08002 * 120.40632 * 179.72830 * 7 6 5 31 31 H 1.09005 * 109.47181 * 300.00166 * 12 11 9 32 32 H 1.08998 * 109.47065 * 60.00272 * 12 11 9 33 33 H 1.08998 * 109.47594 * 184.99971 * 13 12 11 34 34 H 1.09007 * 109.47378 * 305.00076 * 13 12 11 35 35 H 1.09002 * 109.47009 * 299.99898 * 15 14 13 36 36 H 1.08998 * 109.47672 * 59.99931 * 15 14 13 37 37 H 0.97003 * 119.99693 * 180.02562 * 19 18 16 38 38 H 1.08003 * 119.64304 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2002 0.0000 4 8 1.4020 2.2186 0.0005 5 6 3.5405 1.2776 0.0006 6 6 4.1857 2.5190 0.0011 7 6 5.5700 2.5406 0.0022 8 6 6.2685 1.3349 0.0021 9 6 7.7510 1.3482 0.0027 10 8 8.3485 2.4050 0.0027 11 8 8.4348 0.1881 0.0032 12 6 9.8840 0.2771 0.0031 13 6 10.4815 -1.1314 0.0031 14 8 10.1433 -1.7923 -1.2180 15 6 10.6551 -3.1225 -1.3201 16 6 10.2410 -3.7203 -2.6400 17 1 9.6459 -3.1423 -3.3316 18 6 10.6216 -5.0051 -2.9648 19 7 11.3466 -5.7087 -2.1229 20 14 10.1076 -5.7462 -4.6005 21 1 10.6486 -4.9204 -5.7100 22 1 10.6406 -7.1281 -4.7072 23 1 8.6254 -5.7790 -4.6852 24 7 5.6237 0.1746 0.0016 25 6 4.3113 0.1115 0.0002 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 3.6180 3.4377 0.0005 30 1 6.1021 3.4804 -0.0018 31 1 10.2152 0.8119 -0.8871 32 1 10.2152 0.8125 0.8929 33 1 11.5658 -1.0662 0.0926 34 1 10.0807 -1.6962 0.8449 35 1 11.7431 -3.0989 -1.2578 36 1 10.2577 -3.7283 -0.5058 37 1 11.6147 -6.6124 -2.3515 38 1 3.8228 -0.8517 -0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815179592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:54 Heat of formation + Delta-G solvation = -173.032144 kcal Electronic energy + Delta-G solvation = -23866.301256 eV Core-core repulsion = 19867.982199 eV Total energy + Delta-G solvation = -3998.319057 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40527 -40.59244 -39.59118 -37.11036 -36.96186 -36.09738 -33.29418 -32.74130 -32.36305 -30.15648 -28.43071 -26.97757 -26.01797 -24.13377 -22.98857 -22.33363 -21.84644 -21.11491 -18.87316 -18.13955 -17.84800 -17.12053 -16.87582 -16.60952 -16.40645 -16.18967 -15.42104 -15.24477 -14.70511 -14.65976 -14.40851 -14.23570 -13.81041 -13.64842 -13.60814 -13.15854 -12.88297 -12.60545 -12.56721 -11.96209 -11.42365 -11.28992 -11.24699 -11.03679 -10.90792 -10.78161 -10.69724 -10.54622 -10.41955 -10.05739 -9.95594 -9.82564 -9.11572 -8.84842 -8.18582 -6.09469 -4.10850 -0.38327 0.68878 1.68638 2.08801 2.37731 2.43817 3.34168 3.36406 3.37138 3.40699 3.72339 4.11591 4.23902 4.34171 4.37468 4.40873 4.60331 4.67767 4.74095 4.76087 5.08961 5.17044 5.20040 5.27116 5.34579 5.41030 5.43851 5.79795 5.84805 5.87990 5.94062 6.06772 6.38637 7.07817 7.12258 7.22220 7.42816 7.67435 7.80562 8.15198 8.55074 9.01387 9.53640 11.02128 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.002826 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.785109 B = 9906.859667 C =11784.336484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.517 3.483 4 O -0.499 6.499 5 C -0.158 4.158 6 C -0.017 4.017 7 C -0.120 4.120 8 C 0.134 3.866 9 C 0.518 3.482 10 O -0.499 6.499 11 O -0.311 6.311 12 C 0.071 3.929 13 C 0.062 3.938 14 O -0.390 6.390 15 C 0.195 3.805 16 C -0.514 4.514 17 H 0.066 0.934 18 C 0.056 3.944 19 N -0.900 5.900 20 Si 0.909 3.091 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.274 1.274 24 N -0.432 5.432 25 C 0.160 3.840 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.006 0.994 36 H 0.008 0.992 37 H 0.264 0.736 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.008 15.241 7.781 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.266 6.266 3 C 0.360 3.640 4 O -0.388 6.388 5 C -0.162 4.162 6 C -0.042 4.042 7 C -0.140 4.140 8 C -0.002 4.002 9 C 0.360 3.640 10 O -0.388 6.388 11 O -0.225 6.225 12 C -0.002 4.002 13 C -0.016 4.016 14 O -0.310 6.310 15 C 0.121 3.879 16 C -0.552 4.552 17 H 0.084 0.916 18 C -0.145 4.145 19 N -0.539 5.539 20 Si 0.736 3.264 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.200 1.200 24 N -0.142 5.142 25 C -0.001 4.001 26 H 0.085 0.915 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.178 0.822 30 H 0.181 0.819 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.496 14.948 7.653 24.252 hybrid contribution -0.595 0.214 -0.589 0.864 sum -18.091 15.162 7.063 24.639 Atomic orbital electron populations 1.23366 0.75139 1.04306 1.02813 1.86549 1.24187 1.31916 1.83911 1.20864 0.88410 0.81845 0.72872 1.90850 1.66531 1.36031 1.45340 1.20433 0.90928 0.96326 1.08491 1.21730 0.93675 0.97776 0.91046 1.22108 0.93859 0.99578 0.98470 1.20515 0.91896 0.89929 0.97881 1.20724 0.87311 0.82683 0.73289 1.90841 1.69766 1.32346 1.45814 1.86780 1.22277 1.31758 1.81680 1.23367 0.75253 0.98831 1.02776 1.22311 0.97572 0.90973 0.90710 1.87924 1.77184 1.31158 1.34702 1.20225 0.93275 0.76856 0.97546 1.21013 1.33590 0.98638 1.02000 0.91570 1.24940 0.95094 0.96599 0.97846 1.69952 1.37033 1.10880 1.36006 0.86384 0.79044 0.77873 0.83110 1.20047 1.21174 1.19950 1.67898 1.09944 1.27344 1.09004 1.23399 0.88278 0.98503 0.89883 0.91549 0.87478 0.91585 0.82202 0.81948 0.90162 0.90100 0.91785 0.93020 0.97643 0.97437 0.92603 0.79987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.85 9.84 -40.47 -0.40 -3.25 16 3 C 0.52 4.89 7.91 34.69 0.27 5.16 16 4 O -0.50 -5.63 16.20 -19.21 -0.31 -5.94 16 5 C -0.16 -1.47 5.90 -104.73 -0.62 -2.09 16 6 C -0.02 -0.14 9.71 -38.88 -0.38 -0.52 16 7 C -0.12 -1.15 9.62 -39.09 -0.38 -1.52 16 8 C 0.13 1.73 6.75 -82.95 -0.56 1.17 16 9 C 0.52 7.85 7.95 34.85 0.28 8.13 16 10 O -0.50 -7.78 16.10 -19.19 -0.31 -8.09 16 11 O -0.31 -5.38 10.00 -43.17 -0.43 -5.82 16 12 C 0.07 1.12 5.85 37.15 0.22 1.34 16 13 C 0.06 1.13 6.33 37.15 0.24 1.37 16 14 O -0.39 -9.54 10.30 -38.80 -0.40 -9.94 16 15 C 0.20 5.38 5.69 36.01 0.20 5.58 16 16 C -0.51 -15.31 9.43 -34.44 -0.32 -15.63 16 17 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 20 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 24 N -0.43 -5.83 10.10 -9.48 -0.10 -5.93 16 25 C 0.16 1.65 10.78 -17.16 -0.19 1.47 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.16 1.01 7.73 -52.49 -0.41 0.61 16 30 H 0.16 1.27 7.63 -52.49 -0.40 0.87 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 35 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.18 1.49 7.62 -52.48 -0.40 1.09 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -35.48 350.97 -5.76 -41.23 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -4.55 Total: -5.56 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.26 Total: 7.26 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.64 Total: -32.16 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.85 Total: -33.03 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.48 -5.76 -41.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815179592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.798 kcal (2) G-P(sol) polarization free energy of solvation -35.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds