Wall clock time and date at job start Fri Apr 10 2020 18:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34692 * 116.99425 * 2 1 4 4 O 1.21435 * 120.00503 * 0.02562 * 3 2 1 5 5 C 1.47910 * 119.99596 * 179.97438 * 3 2 1 6 6 C 1.39901 * 120.46484 * 180.02562 * 5 3 2 7 7 C 1.38455 * 118.35579 * 179.97438 * 6 5 3 8 8 C 1.39336 * 119.19185 * 0.02562 * 7 6 5 9 9 C 1.48256 * 119.57198 * 179.97438 * 8 7 6 10 10 O 1.21408 * 119.99673 * 359.97438 * 9 8 7 11 11 O 1.34661 * 120.00319 * 179.97438 * 9 8 7 12 12 C 1.45198 * 117.00160 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47190 * 180.02562 * 12 11 9 14 14 O 1.42907 * 109.47320 * 64.99961 * 13 12 11 15 15 C 1.42891 * 114.00180 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47521 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99603 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00819 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99353 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00436 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46922 * 59.99775 * 20 18 16 22 22 H 1.48493 * 109.47335 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47277 * 299.99963 * 20 18 16 24 24 N 1.32744 * 120.85663 * 359.97438 * 8 7 6 25 25 C 1.31391 * 121.80853 * 0.04305 * 24 8 7 26 26 H 1.08994 * 109.47596 * 59.99992 * 1 2 3 27 27 H 1.09000 * 109.46947 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47101 * 299.99366 * 1 2 3 29 29 H 1.07996 * 120.82341 * 359.95967 * 6 5 3 30 30 H 1.08002 * 120.40632 * 179.72830 * 7 6 5 31 31 H 1.09005 * 109.47181 * 300.00166 * 12 11 9 32 32 H 1.08998 * 109.47065 * 60.00272 * 12 11 9 33 33 H 1.08998 * 109.47594 * 184.99971 * 13 12 11 34 34 H 1.09007 * 109.47378 * 305.00076 * 13 12 11 35 35 H 1.09002 * 109.47009 * 299.99898 * 15 14 13 36 36 H 1.08998 * 109.47672 * 59.99931 * 15 14 13 37 37 H 0.97003 * 119.99693 * 180.02562 * 19 18 16 38 38 H 1.08003 * 119.64304 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2002 0.0000 4 8 1.4020 2.2186 0.0005 5 6 3.5405 1.2776 0.0006 6 6 4.1857 2.5190 0.0011 7 6 5.5700 2.5406 0.0022 8 6 6.2685 1.3349 0.0021 9 6 7.7510 1.3482 0.0027 10 8 8.3485 2.4050 0.0027 11 8 8.4348 0.1881 0.0032 12 6 9.8840 0.2771 0.0031 13 6 10.4815 -1.1314 0.0031 14 8 10.1433 -1.7923 -1.2180 15 6 10.6551 -3.1225 -1.3201 16 6 10.2410 -3.7203 -2.6400 17 1 9.6459 -3.1423 -3.3316 18 6 10.6216 -5.0051 -2.9648 19 7 11.3466 -5.7087 -2.1229 20 14 10.1076 -5.7462 -4.6005 21 1 10.6486 -4.9204 -5.7100 22 1 10.6406 -7.1281 -4.7072 23 1 8.6254 -5.7790 -4.6852 24 7 5.6237 0.1746 0.0016 25 6 4.3113 0.1115 0.0002 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 3.6180 3.4377 0.0005 30 1 6.1021 3.4804 -0.0018 31 1 10.2152 0.8119 -0.8871 32 1 10.2152 0.8125 0.8929 33 1 11.5658 -1.0662 0.0926 34 1 10.0807 -1.6962 0.8449 35 1 11.7431 -3.0989 -1.2578 36 1 10.2577 -3.7283 -0.5058 37 1 11.6147 -6.6124 -2.3515 38 1 3.8228 -0.8517 -0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815179592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:53 Heat of formation + Delta-G solvation = -196.360073 kcal Electronic energy + Delta-G solvation = -23867.312831 eV Core-core repulsion = 19867.982199 eV Total energy + Delta-G solvation = -3999.330632 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.114 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.25899 -41.53482 -40.52835 -38.74502 -37.66552 -37.54385 -34.94360 -34.09913 -33.19868 -31.66249 -29.20339 -28.85756 -26.90151 -24.92778 -24.58787 -24.03707 -22.94976 -22.06562 -19.75876 -19.03968 -18.79245 -18.55413 -18.04793 -17.97955 -17.52065 -17.18539 -17.06005 -16.40923 -16.26834 -16.00319 -15.52091 -15.28968 -15.03349 -14.46790 -14.42058 -14.33219 -14.07139 -13.86328 -13.69151 -13.20372 -13.06659 -12.92787 -12.69788 -12.47589 -12.13385 -11.98692 -11.90175 -11.86528 -11.77621 -11.33496 -11.28761 -10.89438 -10.82414 -10.64559 -10.25867 -8.31392 -6.43479 -1.22909 -0.05548 0.77237 1.32460 1.40647 1.45509 1.46747 1.49294 1.53882 2.35406 2.51801 2.82176 3.02423 3.07627 3.37795 3.47627 3.58024 3.69278 3.74242 3.90583 4.10850 4.28497 4.36254 4.38728 4.45646 4.51118 4.56738 4.67013 4.73540 4.76907 4.86158 5.13766 5.15332 5.17400 5.20465 5.54782 5.96133 6.24356 6.45843 6.51216 6.62408 6.80365 7.27896 8.80689 Molecular weight = 309.11amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.002826 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.785109 B = 9906.859667 C =11784.336484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.522 3.478 4 O -0.518 6.518 5 C -0.153 4.153 6 C -0.004 4.004 7 C -0.104 4.104 8 C 0.108 3.892 9 C 0.517 3.483 10 O -0.509 6.509 11 O -0.338 6.338 12 C 0.074 3.926 13 C 0.053 3.947 14 O -0.409 6.409 15 C 0.209 3.791 16 C -0.551 4.551 17 H 0.059 0.941 18 C 0.008 3.992 19 N -0.929 5.929 20 Si 0.982 3.018 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.266 1.266 24 N -0.470 5.470 25 C 0.159 3.841 26 H 0.067 0.933 27 H 0.133 0.867 28 H 0.069 0.931 29 H 0.186 0.814 30 H 0.182 0.818 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.054 0.946 35 H -0.007 1.007 36 H -0.012 1.012 37 H 0.271 0.729 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.456 15.851 7.273 26.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.269 6.269 3 C 0.366 3.634 4 O -0.408 6.408 5 C -0.156 4.156 6 C -0.030 4.030 7 C -0.124 4.124 8 C -0.027 4.027 9 C 0.361 3.639 10 O -0.398 6.398 11 O -0.252 6.252 12 C 0.001 3.999 13 C -0.024 4.024 14 O -0.330 6.330 15 C 0.134 3.866 16 C -0.589 4.589 17 H 0.077 0.923 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.191 1.191 24 N -0.180 5.180 25 C -0.002 4.002 26 H 0.086 0.914 27 H 0.151 0.849 28 H 0.087 0.913 29 H 0.204 0.796 30 H 0.199 0.801 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.011 0.989 36 H 0.006 0.994 37 H 0.080 0.920 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -18.942 15.572 7.164 25.546 hybrid contribution -0.233 0.065 -0.343 0.420 sum -19.175 15.637 6.821 25.665 Atomic orbital electron populations 1.23666 0.73482 1.06151 1.03051 1.86547 1.25824 1.31153 1.83383 1.20800 0.88255 0.81965 0.72357 1.90845 1.66866 1.36663 1.46415 1.20522 0.91049 0.96434 1.07583 1.22024 0.93173 0.98428 0.89329 1.22269 0.94234 0.98989 0.96888 1.20442 0.90719 0.91104 1.00436 1.21118 0.88258 0.81938 0.72630 1.90815 1.70248 1.32236 1.46462 1.86761 1.22896 1.33349 1.82220 1.23371 0.75043 0.97057 1.04383 1.22658 0.99375 0.91954 0.88388 1.87867 1.77420 1.29748 1.37922 1.19853 0.92257 0.78237 0.96246 1.21354 1.34712 0.99757 1.03034 0.92313 1.25936 0.94515 0.96649 1.01984 1.70053 1.37377 1.11402 1.37994 0.85252 0.78994 0.77352 0.77932 1.19063 1.19794 1.19087 1.67785 1.11453 1.28253 1.10555 1.23603 0.87374 0.99663 0.89583 0.91435 0.84920 0.91253 0.79631 0.80115 0.90351 0.86589 0.89585 0.92734 0.98882 0.99408 0.91973 0.78543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.35 -5.20 9.84 -56.02 -0.55 -5.76 16 3 C 0.52 9.03 7.91 70.38 0.56 9.59 16 4 O -0.52 -10.76 16.20 20.05 0.32 -10.44 16 5 C -0.15 -2.61 5.90 -19.94 -0.12 -2.73 16 6 C 0.00 -0.06 9.71 22.72 0.22 0.16 16 7 C -0.10 -1.82 9.62 22.59 0.22 -1.60 16 8 C 0.11 2.77 6.75 41.94 0.28 3.05 16 9 C 0.52 15.70 7.95 70.49 0.56 16.26 16 10 O -0.51 -15.54 16.10 20.13 0.32 -15.22 16 11 O -0.34 -11.84 10.00 -53.04 -0.53 -12.37 16 12 C 0.07 2.32 5.85 71.98 0.42 2.74 16 13 C 0.05 1.95 6.33 71.98 0.46 2.41 16 14 O -0.41 -20.57 10.30 -145.57 -1.50 -22.07 16 15 C 0.21 11.89 5.69 71.24 0.41 12.30 16 16 C -0.55 -33.47 9.43 25.60 0.24 -33.23 16 17 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 18 C 0.01 0.45 5.46 84.65 0.46 0.92 16 19 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 20 Si 0.98 44.80 29.54 68.60 2.03 46.83 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 N -0.47 -12.75 10.10 -183.90 -1.86 -14.61 16 25 C 0.16 3.18 10.78 85.13 0.92 4.10 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.19 1.78 7.73 -2.91 -0.02 1.76 16 30 H 0.18 2.45 7.63 -2.91 -0.02 2.43 16 31 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 35 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.20 3.11 7.62 -2.91 -0.02 3.09 16 Total: -1.00 -76.99 350.97 5.43 -71.56 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.09 Total: 2.44 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.82 Total: 15.41 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -1.57 Total: -70.40 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: -1.93 Total: -65.85 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -76.99 5.43 -71.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815179592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.797 kcal (2) G-P(sol) polarization free energy of solvation -76.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds