Wall clock time and date at job start Fri Apr 10 2020 18:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.87678 * 2 1 4 4 C 1.54324 * 109.88047 * 121.02032 * 2 1 3 5 5 H 1.09001 * 110.72057 * 23.23939 * 4 2 1 6 6 N 1.46506 * 110.71755 * 259.97088 * 4 2 1 7 7 C 1.36936 * 119.99985 * 160.02358 * 6 4 2 8 8 H 1.08003 * 119.99726 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00067 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00241 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00027 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47092 * 89.99697 * 11 9 7 13 13 H 1.48502 * 109.47056 * 210.00261 * 11 9 7 14 14 H 1.48505 * 109.46834 * 329.99757 * 11 9 7 15 15 C 1.55156 * 102.94374 * 141.61062 * 4 2 1 16 16 C 1.54906 * 101.61451 * 324.47489 * 15 4 2 17 17 N 1.47019 * 109.88235 * 238.82739 * 2 1 3 18 18 C 1.34776 * 125.64982 * 61.60556 * 17 2 1 19 19 O 1.21577 * 119.99871 * 0.02562 * 18 17 2 20 20 C 1.47616 * 120.00055 * 180.02562 * 18 17 2 21 21 N 1.33060 * 120.53210 * 359.72555 * 20 18 17 22 22 N 1.28711 * 120.37215 * 179.73670 * 21 20 18 23 23 C 1.32946 * 121.54902 * 0.52572 * 22 21 20 24 24 O 1.35292 * 119.46945 * 179.73221 * 23 22 21 25 25 N 1.32467 * 121.06331 * 359.75795 * 23 22 21 26 26 C 1.32863 * 119.51161 * 359.97362 * 25 23 22 27 27 O 1.35293 * 120.71447 * 180.02562 * 26 25 23 28 28 H 1.09007 * 109.46666 * 298.98490 * 1 2 3 29 29 H 1.09002 * 109.46808 * 58.97605 * 1 2 3 30 30 H 1.08994 * 109.47264 * 178.98513 * 1 2 3 31 31 H 0.96998 * 119.99751 * 340.02403 * 6 4 2 32 32 H 0.96999 * 120.00334 * 179.97438 * 10 9 7 33 33 H 1.09002 * 111.00677 * 82.57073 * 15 4 2 34 34 H 1.09002 * 111.00564 * 206.38331 * 15 4 2 35 35 H 1.09008 * 110.36767 * 155.86672 * 16 15 4 36 36 H 1.08997 * 110.36995 * 278.19392 * 16 15 4 37 37 H 0.96696 * 114.00623 * 270.02067 * 24 23 22 38 38 H 0.96704 * 113.99407 * 269.97608 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7479 1.2437 5 1 1.3050 -1.4437 1.6202 6 7 2.4555 0.1991 2.2873 7 6 2.5575 -0.2177 3.5876 8 1 2.3429 -1.2447 3.8439 9 6 2.9376 0.6794 4.5763 10 7 3.2005 1.9306 4.2638 11 14 3.0774 0.1106 6.3501 12 1 4.4572 -0.3744 6.6071 13 1 2.7740 1.2450 7.2591 14 1 2.1120 -0.9911 6.5942 15 6 3.2876 -1.5134 0.6945 16 6 2.8151 -1.8814 -0.7341 17 7 2.0300 -0.7156 -1.1829 18 6 1.8074 -0.3654 -2.4652 19 8 1.1420 0.6199 -2.7194 20 6 2.3715 -1.1779 -3.5609 21 7 3.1058 -2.2552 -3.2947 22 7 3.5920 -2.9643 -4.2525 23 6 3.3894 -2.6445 -5.5269 24 8 3.9248 -3.4168 -6.5001 25 7 2.6722 -1.5815 -5.8591 26 6 2.1460 -0.8224 -4.9040 27 8 1.4090 0.2685 -5.2158 28 1 -0.3633 0.4980 0.8990 29 1 -0.3633 0.5297 -0.8807 30 1 -0.3633 -1.0274 -0.0182 31 1 2.6485 1.1214 2.0570 32 1 3.4658 2.5577 4.9547 33 1 4.1654 -0.8680 0.6616 34 1 3.4856 -2.4090 1.2833 35 1 3.6725 -2.0370 -1.3890 36 1 2.1892 -2.7733 -0.7088 37 1 4.8114 -3.1455 -6.7746 38 1 1.9257 1.0818 -5.2977 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986487459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:22 Heat of formation + Delta-G solvation = 4.031327 kcal Electronic energy + Delta-G solvation = -25609.136885 eV Core-core repulsion = 21683.081379 eV Total energy + Delta-G solvation = -3926.055507 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.51261 -40.07412 -38.83481 -38.11492 -37.39596 -34.83461 -34.17729 -32.62751 -31.33579 -30.88801 -29.13499 -26.57964 -25.50549 -25.17838 -23.18457 -22.82581 -20.63550 -20.52250 -20.14966 -19.39470 -18.65779 -17.44978 -17.26387 -17.14405 -16.19399 -15.51409 -15.37458 -14.86099 -14.52606 -14.13647 -13.82120 -13.56619 -13.36706 -13.26263 -13.00535 -12.83777 -12.69360 -12.21538 -12.04140 -11.97878 -11.88754 -11.47606 -11.17966 -11.04805 -10.84445 -10.59261 -10.39859 -10.27023 -10.17312 -9.97807 -9.80899 -9.74549 -8.95861 -8.54783 -7.05750 -5.83995 -3.14449 -0.41996 -0.14434 1.93738 2.32566 2.53715 2.71033 3.04522 3.34486 3.40116 3.45877 3.47193 3.91263 4.12113 4.44166 4.52859 4.89772 5.04669 5.17691 5.36501 5.52890 5.59561 5.68809 5.78797 5.93723 5.97658 6.03140 6.15258 6.30675 6.40096 6.55304 6.56628 6.61329 6.62527 6.76367 6.90164 7.47794 7.64381 7.66521 7.97097 8.33265 9.45063 9.98641 10.33434 11.38179 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.027515 B = 0.003155 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.384077 B = 8873.644326 C = 9522.342878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.127 3.873 3 H 0.083 0.917 4 C 0.176 3.824 5 H 0.067 0.933 6 N -0.715 5.715 7 C -0.243 4.243 8 H 0.073 0.927 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.156 4.156 16 C 0.094 3.906 17 N -0.582 5.582 18 C 0.586 3.414 19 O -0.515 6.515 20 C -0.043 4.043 21 N -0.107 5.107 22 N -0.285 5.285 23 C 0.477 3.523 24 O -0.447 6.447 25 N -0.510 5.510 26 C 0.420 3.580 27 O -0.440 6.440 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.386 0.614 32 H 0.256 0.744 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.421 0.579 38 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 -6.915 -19.875 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.101 0.899 4 C 0.064 3.936 5 H 0.085 0.915 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.198 4.198 16 C -0.029 4.029 17 N -0.314 5.314 18 C 0.369 3.631 19 O -0.390 6.390 20 C -0.196 4.196 21 N 0.034 4.966 22 N -0.147 5.147 23 C 0.172 3.828 24 O -0.250 6.250 25 N -0.253 5.253 26 C 0.222 3.778 27 O -0.248 6.248 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.220 0.780 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.283 0.717 38 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 0.678 -7.919 -19.806 21.342 hybrid contribution 0.546 1.088 0.338 1.263 sum 1.225 -6.831 -19.468 20.668 Atomic orbital electron populations 1.22070 0.94479 1.01883 1.02992 1.22042 0.94691 0.96966 0.83897 0.89862 1.21266 0.93759 0.91610 0.86936 0.91531 1.42335 1.80972 1.09076 1.03133 1.19199 1.39260 0.95184 0.83763 0.90928 1.24757 1.02053 0.95627 0.98165 1.69658 1.52510 1.02997 1.32628 0.86182 0.77776 0.77373 0.84777 1.21655 1.21774 1.20665 1.23611 1.01185 1.01840 0.93147 1.22806 0.95673 0.87344 0.97069 1.48464 1.50204 1.28567 1.04174 1.16600 0.81495 0.84156 0.80808 1.90854 1.39412 1.26128 1.82586 1.24156 1.01144 0.98592 0.95663 1.74337 1.00466 0.99020 1.22728 1.73907 1.19663 1.23401 0.97773 1.21885 0.89217 0.84509 0.87192 1.84701 1.37493 1.50974 1.51824 1.68182 1.10977 1.06944 1.39190 1.19870 0.83327 0.88621 0.85955 1.84693 1.32474 1.16446 1.91145 0.90763 0.91847 0.92915 0.77991 0.93374 0.90613 0.90301 0.88865 0.91249 0.71679 0.71377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.09 37.16 0.34 -2.13 16 2 C 0.13 2.12 3.21 -66.95 -0.21 1.91 16 3 H 0.08 1.53 7.68 -51.93 -0.40 1.13 16 4 C 0.18 3.24 3.12 -66.09 -0.21 3.03 16 5 H 0.07 1.23 7.83 -51.93 -0.41 0.82 16 6 N -0.71 -16.75 5.25 -51.65 -0.27 -17.02 16 7 C -0.24 -6.36 9.98 -15.06 -0.15 -6.51 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 11 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 C -0.16 -2.50 6.76 -24.58 -0.17 -2.67 16 16 C 0.09 1.28 5.97 -2.47 -0.01 1.26 16 17 N -0.58 -8.70 3.07 -164.11 -0.50 -9.20 16 18 C 0.59 8.58 7.62 -12.43 -0.09 8.49 16 19 O -0.51 -8.39 14.31 -16.07 -0.23 -8.62 16 20 C -0.04 -0.54 6.81 -82.56 -0.56 -1.10 16 21 N -0.11 -1.32 7.97 33.45 0.27 -1.06 16 22 N -0.29 -3.30 11.60 29.21 0.34 -2.96 16 23 C 0.48 4.85 8.81 -90.58 -0.80 4.05 16 24 O -0.45 -3.28 13.63 -17.57 -0.24 -3.52 16 25 N -0.51 -5.54 10.57 -14.33 -0.15 -5.69 16 26 C 0.42 4.72 7.85 -16.15 -0.13 4.59 16 27 O -0.44 -4.43 11.76 -38.94 -0.46 -4.89 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.02 6.90 -51.93 -0.36 0.66 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.39 9.73 7.51 -40.82 -0.31 9.42 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.20 5.91 -51.92 -0.31 0.89 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.42 0.61 9.06 45.56 0.41 1.02 16 38 H 0.42 2.19 9.06 45.56 0.41 2.60 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -32.97 327.61 -5.31 -38.28 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -2.61 Total: 8.97 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -2.09 Total: 10.56 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 0.40 Total: -62.29 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.93 Total: -17.04 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.97 -5.31 -38.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986487459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.314 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds