Wall clock time and date at job start Fri Apr 10 2020 18:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09004 * 111.00584 * 277.42534 * 12 11 10 14 14 C 1.52998 * 111.00283 * 153.57810 * 12 11 10 15 15 N 1.46504 * 109.47171 * 181.35255 * 14 12 11 16 16 C 1.34773 * 120.00257 * 180.02562 * 15 14 12 17 17 O 1.21578 * 119.99863 * 359.97438 * 16 15 14 18 18 C 1.47616 * 120.00362 * 179.97438 * 16 15 14 19 19 N 1.33058 * 120.52569 * 359.72479 * 18 16 15 20 20 N 1.28714 * 120.36640 * 179.75884 * 19 18 16 21 21 C 1.32946 * 121.55015 * 0.52245 * 20 19 18 22 22 O 1.35296 * 119.46667 * 179.70935 * 21 20 19 23 23 N 1.32459 * 121.06641 * 359.73489 * 21 20 19 24 24 C 1.32868 * 119.50836 * 359.97438 * 23 21 20 25 25 O 1.35290 * 120.71487 * 180.02562 * 24 23 21 26 26 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 27 27 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 29 29 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 30 30 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 31 31 H 1.08993 * 110.87182 * 96.23712 * 11 10 9 32 32 H 1.09005 * 109.47074 * 301.34528 * 14 12 11 33 33 H 1.08999 * 109.47392 * 61.34922 * 14 12 11 34 34 H 0.96996 * 119.99481 * 359.97438 * 15 14 12 35 35 H 0.96696 * 114.00653 * 270.02352 * 22 21 20 36 36 H 0.96706 * 113.99785 * 269.97785 * 25 24 23 37 37 H 1.09002 * 110.36346 * 322.70225 * 26 9 7 38 38 H 1.08999 * 110.37028 * 84.91483 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9146 -4.4021 -2.0770 14 6 1.0712 -6.0618 -0.6839 15 7 2.3370 -6.5297 -1.2541 16 6 2.7115 -7.8151 -1.0993 17 8 1.9991 -8.5862 -0.4862 18 6 3.9866 -8.2867 -1.6743 19 7 4.7718 -7.4532 -2.3519 20 7 5.8852 -7.8666 -2.8480 21 6 6.2815 -9.1283 -2.7120 22 8 7.4572 -9.5189 -3.2557 23 7 5.5437 -10.0093 -2.0532 24 6 4.3889 -9.6266 -1.5189 25 8 3.6163 -10.5059 -0.8406 26 6 1.9495 -3.7169 -0.2720 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5671 -2.1845 0.7439 29 1 -0.5328 -1.9641 -1.0279 30 1 -1.2640 -4.1759 -1.0702 31 1 -0.6329 -4.5159 0.5729 32 1 1.0852 -6.2033 0.3968 33 1 0.2467 -6.6302 -1.1141 34 1 2.9051 -5.9145 -1.7435 35 1 7.3822 -9.8438 -4.1634 36 1 2.9744 -10.9731 -1.3929 37 1 2.8620 -3.6576 -0.8654 38 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028662975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:05 Heat of formation + Delta-G solvation = 0.504937 kcal Electronic energy + Delta-G solvation = -24831.272152 eV Core-core repulsion = 20905.063730 eV Total energy + Delta-G solvation = -3926.208422 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.58805 -39.93258 -38.75393 -38.18649 -37.64315 -34.95159 -34.73709 -32.80981 -32.15593 -29.82986 -28.37001 -26.73542 -25.81718 -25.18962 -23.59302 -21.54776 -20.60054 -20.20954 -19.95784 -19.82840 -18.75351 -18.17671 -17.49815 -16.79033 -16.02826 -15.76608 -15.39761 -15.12247 -14.63504 -14.47991 -14.21980 -13.61292 -13.53202 -13.18359 -13.13963 -12.88503 -12.36930 -12.15701 -12.08844 -12.02609 -11.77616 -11.42960 -10.90411 -10.80555 -10.60635 -10.48955 -10.27247 -10.10480 -10.01850 -9.92648 -9.84730 -9.67764 -9.16421 -8.57422 -6.83023 -5.72551 -3.04810 -0.51605 -0.22206 1.85560 2.21303 2.45070 2.66545 2.93862 3.26780 3.40970 3.46495 3.48248 3.85212 4.12273 4.42130 4.50204 4.88002 5.03134 5.17554 5.38445 5.51887 5.62881 5.83434 5.87974 5.95171 6.00415 6.22203 6.31292 6.49614 6.50046 6.56120 6.64679 6.67336 6.88387 7.22553 7.55455 7.61054 7.63090 7.82472 7.85198 8.25984 9.22083 9.82590 10.48603 11.39701 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.002897 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.101881 B = 9662.194900 C =10878.348101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.083 0.917 14 C 0.131 3.869 15 N -0.697 5.697 16 C 0.577 3.423 17 O -0.514 6.514 18 C -0.050 4.050 19 N -0.109 5.109 20 N -0.279 5.279 21 C 0.480 3.520 22 O -0.446 6.446 23 N -0.509 5.509 24 C 0.421 3.579 25 O -0.440 6.440 26 C 0.140 3.860 27 H 0.252 0.748 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.413 0.587 35 H 0.422 0.578 36 H 0.422 0.578 37 H 0.038 0.962 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 -21.537 -8.336 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.101 0.899 14 C 0.008 3.992 15 N -0.348 5.348 16 C 0.358 3.642 17 O -0.388 6.388 18 C -0.203 4.203 19 N 0.032 4.968 20 N -0.142 5.142 21 C 0.175 3.825 22 O -0.248 6.248 23 N -0.253 5.253 24 C 0.223 3.777 25 O -0.247 6.247 26 C 0.014 3.986 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.250 0.750 35 H 0.284 0.716 36 H 0.286 0.714 37 H 0.057 0.943 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.869 -21.004 -7.410 23.308 hybrid contribution 0.086 0.180 -0.535 0.571 sum 6.955 -20.824 -7.945 23.348 Atomic orbital electron populations 1.69970 1.04924 1.25048 1.56826 1.24818 0.95696 0.97677 1.02146 0.86123 0.78716 0.83600 0.77505 1.21594 1.21802 1.20617 1.19069 0.91152 0.82557 1.43010 0.90415 1.44477 1.01682 1.00928 1.86125 1.21164 0.84471 0.88345 1.00900 1.22856 0.95161 0.99713 0.99527 1.22639 0.98815 0.91474 1.00977 0.89909 1.21572 0.83841 0.94757 0.99028 1.45965 1.23826 1.09775 1.55244 1.16997 0.83158 0.83365 0.80716 1.90868 1.52512 1.54751 1.40662 1.24139 1.00098 0.93883 1.02229 1.74035 0.96296 1.26666 0.99778 1.73896 1.08202 1.13664 1.18425 1.21894 0.85436 0.85841 0.89304 1.84714 1.21393 1.83850 1.34867 1.68194 1.05878 1.40083 1.11107 1.19891 0.86746 0.87738 0.83334 1.84707 1.50151 1.56084 1.33777 1.21592 0.94151 0.86682 0.96204 0.93761 0.94096 0.93311 0.91903 0.92144 0.90687 0.90985 0.75021 0.71582 0.71437 0.94339 0.96338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.36 55.49 0.57 -26.31 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.06 29.56 -169.99 -5.02 17.03 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.37 10.26 -15.06 -0.15 -6.53 16 8 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 9 N -0.61 -15.19 3.39 -170.07 -0.58 -15.77 16 10 C 0.18 4.15 5.38 -3.07 -0.02 4.14 16 11 C -0.13 -2.31 6.42 -24.89 -0.16 -2.47 16 12 C -0.12 -1.87 3.10 -88.47 -0.27 -2.14 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 14 C 0.13 1.70 5.12 -4.04 -0.02 1.68 16 15 N -0.70 -8.47 5.40 -61.32 -0.33 -8.80 16 16 C 0.58 7.10 7.80 -12.44 -0.10 7.01 16 17 O -0.51 -7.24 15.27 -16.07 -0.25 -7.49 16 18 C -0.05 -0.56 6.85 -82.56 -0.57 -1.12 16 19 N -0.11 -1.25 10.88 33.45 0.36 -0.89 16 20 N -0.28 -3.11 11.60 29.21 0.34 -2.77 16 21 C 0.48 4.61 8.81 -90.58 -0.80 3.81 16 22 O -0.45 -3.08 13.63 -17.58 -0.24 -3.32 16 23 N -0.51 -5.12 10.58 -14.33 -0.15 -5.27 16 24 C 0.42 4.23 7.85 -16.15 -0.13 4.11 16 25 O -0.44 -3.87 11.76 -38.93 -0.46 -4.33 16 26 C 0.14 2.75 6.41 -2.53 -0.02 2.73 16 27 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.04 1.08 7.62 -51.93 -0.40 0.68 16 29 H 0.05 1.27 7.29 -51.93 -0.38 0.90 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 32 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.41 4.81 7.70 -40.82 -0.31 4.50 16 35 H 0.42 0.37 9.06 45.56 0.41 0.78 16 36 H 0.42 1.54 9.06 45.56 0.41 1.95 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.02 0.38 8.01 -51.93 -0.42 -0.04 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -35.13 330.83 -5.84 -40.97 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -2.75 Total: 1.04 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -2.33 Total: 10.92 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.22 Total: -59.81 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.94 Total: -15.14 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.13 -5.84 -40.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028662975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.477 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds