Wall clock time and date at job start Fri Apr 10 2020 18:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09004 * 111.00584 * 277.42534 * 12 11 10 14 14 C 1.52998 * 111.00283 * 153.57810 * 12 11 10 15 15 N 1.46504 * 109.47171 * 181.35255 * 14 12 11 16 16 C 1.34773 * 120.00257 * 180.02562 * 15 14 12 17 17 O 1.21578 * 119.99863 * 359.97438 * 16 15 14 18 18 C 1.47616 * 120.00362 * 179.97438 * 16 15 14 19 19 N 1.33058 * 120.52569 * 359.72479 * 18 16 15 20 20 N 1.28714 * 120.36640 * 179.75884 * 19 18 16 21 21 C 1.32946 * 121.55015 * 0.52245 * 20 19 18 22 22 O 1.35296 * 119.46667 * 179.70935 * 21 20 19 23 23 N 1.32459 * 121.06641 * 359.73489 * 21 20 19 24 24 C 1.32868 * 119.50836 * 359.97438 * 23 21 20 25 25 O 1.35290 * 120.71487 * 180.02562 * 24 23 21 26 26 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 27 27 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 29 29 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 30 30 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 31 31 H 1.08993 * 110.87182 * 96.23712 * 11 10 9 32 32 H 1.09005 * 109.47074 * 301.34528 * 14 12 11 33 33 H 1.08999 * 109.47392 * 61.34922 * 14 12 11 34 34 H 0.96996 * 119.99481 * 359.97438 * 15 14 12 35 35 H 0.96696 * 114.00653 * 270.02352 * 22 21 20 36 36 H 0.96706 * 113.99785 * 269.97785 * 25 24 23 37 37 H 1.09002 * 110.36346 * 322.70225 * 26 9 7 38 38 H 1.08999 * 110.37028 * 84.91483 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9146 -4.4021 -2.0770 14 6 1.0712 -6.0618 -0.6839 15 7 2.3370 -6.5297 -1.2541 16 6 2.7115 -7.8151 -1.0993 17 8 1.9991 -8.5862 -0.4862 18 6 3.9866 -8.2867 -1.6743 19 7 4.7718 -7.4532 -2.3519 20 7 5.8852 -7.8666 -2.8480 21 6 6.2815 -9.1283 -2.7120 22 8 7.4572 -9.5189 -3.2557 23 7 5.5437 -10.0093 -2.0532 24 6 4.3889 -9.6266 -1.5189 25 8 3.6163 -10.5059 -0.8406 26 6 1.9495 -3.7169 -0.2720 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5671 -2.1845 0.7439 29 1 -0.5328 -1.9641 -1.0279 30 1 -1.2640 -4.1759 -1.0702 31 1 -0.6329 -4.5159 0.5729 32 1 1.0852 -6.2033 0.3968 33 1 0.2467 -6.6302 -1.1141 34 1 2.9051 -5.9145 -1.7435 35 1 7.3822 -9.8438 -4.1634 36 1 2.9744 -10.9731 -1.3929 37 1 2.8620 -3.6576 -0.8654 38 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028662975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:04 Heat of formation + Delta-G solvation = -34.016569 kcal Electronic energy + Delta-G solvation = -24832.769117 eV Core-core repulsion = 20905.063730 eV Total energy + Delta-G solvation = -3927.705387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.35302 -40.87890 -39.57022 -39.06494 -38.84286 -36.10035 -35.59393 -34.37226 -33.21791 -31.54607 -29.88549 -27.74171 -27.12147 -26.29371 -25.06040 -22.59473 -21.78798 -21.33379 -21.24796 -20.73792 -19.40938 -19.25529 -18.64548 -18.21859 -17.19098 -16.78372 -16.61549 -16.23850 -16.04849 -15.68906 -15.32438 -15.11250 -14.58577 -14.21899 -13.95363 -13.91602 -13.81940 -13.61406 -13.40044 -13.00918 -12.84899 -12.79507 -12.74500 -12.62711 -11.99632 -11.92172 -11.84172 -11.52708 -11.42355 -11.27636 -11.26036 -10.73002 -10.66353 -10.16484 -8.86512 -7.84802 -5.18501 -1.26065 -0.98614 1.16097 1.39742 1.47079 1.48532 1.57391 1.70053 1.80883 2.10629 2.44485 2.50984 3.21310 3.30803 3.33443 3.62274 3.67792 3.88379 4.05379 4.06729 4.24269 4.48010 4.67214 4.73143 4.82961 4.95787 5.08146 5.13167 5.18766 5.25714 5.45664 5.49858 5.71562 5.81645 6.20111 6.22233 6.22947 6.28039 6.82140 6.91538 7.12936 7.80822 8.44919 9.26132 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.002897 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.101881 B = 9662.194900 C =10878.348101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.629 5.629 10 C 0.180 3.820 11 C -0.120 4.120 12 C -0.098 4.098 13 H 0.091 0.909 14 C 0.143 3.857 15 N -0.696 5.696 16 C 0.583 3.417 17 O -0.532 6.532 18 C -0.059 4.059 19 N -0.116 5.116 20 N -0.298 5.298 21 C 0.491 3.509 22 O -0.447 6.447 23 N -0.516 5.516 24 C 0.431 3.569 25 O -0.447 6.447 26 C 0.134 3.866 27 H 0.246 0.754 28 H 0.001 0.999 29 H 0.014 0.986 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.416 0.584 35 H 0.447 0.553 36 H 0.442 0.558 37 H 0.045 0.955 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 -23.350 -9.134 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.356 5.356 10 C 0.055 3.945 11 C -0.158 4.158 12 C -0.117 4.117 13 H 0.109 0.891 14 C 0.020 3.980 15 N -0.347 5.347 16 C 0.365 3.635 17 O -0.408 6.408 18 C -0.212 4.212 19 N 0.025 4.975 20 N -0.162 5.162 21 C 0.186 3.814 22 O -0.254 6.254 23 N -0.260 5.260 24 C 0.233 3.767 25 O -0.258 6.258 26 C 0.009 3.991 27 H 0.056 0.944 28 H 0.019 0.981 29 H 0.033 0.967 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.253 0.747 35 H 0.314 0.686 36 H 0.310 0.690 37 H 0.063 0.937 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.854 -22.874 -8.253 25.554 hybrid contribution -0.132 0.658 -0.289 0.731 sum 7.721 -22.216 -8.542 25.023 Atomic orbital electron populations 1.70189 1.06271 1.25234 1.58134 1.25638 0.96577 1.00948 1.02652 0.85105 0.77822 0.79373 0.77331 1.21271 1.22258 1.19381 1.19454 0.91609 0.84032 1.42131 0.90163 1.44814 1.02612 1.02198 1.85944 1.20958 0.83746 0.92310 0.97479 1.22708 0.96897 0.94972 1.01270 1.22445 0.95993 0.92549 1.00740 0.89067 1.21379 0.84971 0.92727 0.98955 1.45887 1.23625 1.09963 1.55225 1.17031 0.83288 0.83004 0.80202 1.90858 1.53213 1.55167 1.41536 1.23909 0.99782 0.94375 1.03156 1.73953 0.96570 1.27165 0.99797 1.73867 1.08347 1.14571 1.19373 1.21958 0.85480 0.85393 0.88521 1.84679 1.20046 1.83811 1.36850 1.68319 1.06026 1.39984 1.11657 1.19872 0.86773 0.87582 0.82438 1.84663 1.50655 1.56013 1.34474 1.21787 0.95505 0.84980 0.96792 0.94422 0.98068 0.96732 0.89285 0.90696 0.91188 0.88940 0.74677 0.68580 0.68983 0.93663 0.96344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.31 10.36 21.65 0.22 -57.09 16 2 C -0.07 -3.72 5.48 84.86 0.46 -3.26 16 3 Si 0.98 46.01 29.56 68.60 2.03 48.04 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.24 -13.68 10.26 84.03 0.86 -12.82 16 8 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 9 N -0.63 -31.94 3.39 -691.98 -2.35 -34.29 16 10 C 0.18 8.70 5.38 86.73 0.47 9.17 16 11 C -0.12 -3.97 6.42 31.78 0.20 -3.76 16 12 C -0.10 -2.86 3.10 -9.40 -0.03 -2.89 16 13 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 14 C 0.14 3.33 5.12 86.38 0.44 3.77 16 15 N -0.70 -15.42 5.40 -466.19 -2.52 -17.93 16 16 C 0.58 13.24 7.80 86.72 0.68 13.91 16 17 O -0.53 -13.90 15.27 16.47 0.25 -13.64 16 18 C -0.06 -1.20 6.85 42.05 0.29 -0.92 16 19 N -0.12 -2.51 10.88 -48.10 -0.52 -3.04 16 20 N -0.30 -6.21 11.60 -174.23 -2.02 -8.23 16 21 C 0.49 8.54 8.81 180.34 1.59 10.13 16 22 O -0.45 -5.20 13.63 -85.82 -1.17 -6.37 16 23 N -0.52 -9.40 10.58 -424.98 -4.49 -13.90 16 24 C 0.43 7.91 7.85 85.15 0.67 8.58 16 25 O -0.45 -6.99 11.76 -65.33 -0.77 -7.76 16 26 C 0.13 5.16 6.41 86.85 0.56 5.71 16 27 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.00 0.06 7.62 -2.39 -0.02 0.04 16 29 H 0.01 0.78 7.29 -2.39 -0.02 0.77 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.28 8.04 -2.39 -0.02 2.27 16 32 H 0.07 1.76 8.10 -2.38 -0.02 1.74 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.42 8.89 7.70 -92.71 -0.71 8.18 16 35 H 0.45 -0.32 9.06 -74.06 -0.67 -0.99 16 36 H 0.44 2.28 9.06 -74.05 -0.67 1.61 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.02 0.73 8.01 -2.39 -0.02 0.71 16 Total: -1.00 -76.86 330.83 -6.05 -82.91 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -0.90 Total: 3.68 kcal Atomic # 6 Polarization: 21.44 SS G_CDS: 6.19 Total: 27.62 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -11.68 Total: -134.47 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -1.69 Total: -27.78 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -76.86 -6.05 -82.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028662975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.895 kcal (2) G-P(sol) polarization free energy of solvation -76.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds